EWM29442.1, cds1212 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29442.1 vs. NCBI_GenBank
Match: gi|585111978|gb|EWM29442.1| (fatty-acyl [Nannochloropsis gaditana]) HSP 1 Score: 773.852 bits (1997), Expect = 0.000e+0 Identity = 371/371 (100.00%), Postives = 371/371 (100.00%), Query Frame = 0
Query: 1 MHNLSEAFSKLFWGEMPKIIPYRSVPDNVPFTQLFQHYPVLSPFYTEYEKNFHASSYVNFAQNTWPALPLALCGIYGLMIVVGTKVMESRPKHEWKTALACWNLLLSVFSFCGMLRTVPHLLHNVTTLPFKDTICRHPAETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAVMYAYYYLTAIKAWPSWIPPSIITVAQISQMMVGVGICVASFYYLYTDPEHCEVKPQNVYSGALMYGSYLYLFCDFFVRRFLRGGKPRLGEERSAVLTMTKKIKDIHDFGGWVALSPCTSCSPHMYAIEHFHHQFRGKAEIGLKTSKHMVASIKEKKT 371
MHNLSEAFSKLFWGEMPKIIPYRSVPDNVPFTQLFQHYPVLSPFYTEYEKNFHASSYVNFAQNTWPALPLALCGIYGLMIVVGTKVMESRPKHEWKTALACWNLLLSVFSFCGMLRTVPHLLHNVTTLPFKDTICRHPAETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAVMYAYYYLTAIKAWPSWIPPSIITVAQISQMMVGVGICVASFYYLYTDPEHCEVKPQNVYSGALMYGSYLYLFCDFFVRRFLRGGKPRLGEERSAVLTMTKKIKDIHDFGGWVALSPCTSCSPHMYAIEHFHHQFRGKAEIGLKTSKHMVASIKEKKT
Sbjct: 1 MHNLSEAFSKLFWGEMPKIIPYRSVPDNVPFTQLFQHYPVLSPFYTEYEKNFHASSYVNFAQNTWPALPLALCGIYGLMIVVGTKVMESRPKHEWKTALACWNLLLSVFSFCGMLRTVPHLLHNVTTLPFKDTICRHPAETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAVMYAYYYLTAIKAWPSWIPPSIITVAQISQMMVGVGICVASFYYLYTDPEHCEVKPQNVYSGALMYGSYLYLFCDFFVRRFLRGGKPRLGEERSAVLTMTKKIKDIHDFGGWVALSPCTSCSPHMYAIEHFHHQFRGKAEIGLKTSKHMVASIKEKKT 371
BLAST of EWM29442.1 vs. NCBI_GenBank
Match: gi|553192576|ref|XP_005855601.1| (fatty-acyl [Nannochloropsis gaditana CCMP526] >gi|422293464|gb|EKU20764.1| fatty-acyl [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 657.522 bits (1695), Expect = 0.000e+0 Identity = 315/319 (98.75%), Postives = 317/319 (99.37%), Query Frame = 0
Query: 1 MHNLSEAFSKLFWGEMPKIIPYRSVPDNVPFTQLFQHYPVLSPFYTEYEKNFHASSYVNFAQNTWPALPLALCGIYGLMIVVGTKVMESRPKHEWKTALACWNLLLSVFSFCGMLRTVPHLLHNVTTLPFKDTICRHPAETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAVMYAYYYLTAIKAWPSWIPPSIITVAQISQMMVGVGICVASFYYLYTDPEHCEVKPQNVYSGALMYGSYLYLFCDFFVRRFLRGGKPRLGEERSAVLTMTKKIKDI 319
M+NLSEAFSKL WGEMPKIIPYRSVPDNVPFTQLFQHYPVLSPFYTEYEKNFHASSYVNFAQNTWPALPLALCGIYGLMIVVGTKVMESRPKHEWKTALACWNLLLSVFSFCGMLRTVPHLL NVTTLPFKDTICRHPAETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAVMYAYYYLTAIKAWPSWIPPSIITVAQISQMMVGVGICVASFYYLYTDPEHCEVKPQNVYSGALMYGSYLYLFCDFFVRRFLRGGKPRLGEERSAVLTMTKKIKD+
Sbjct: 1 MNNLSEAFSKLIWGEMPKIIPYRSVPDNVPFTQLFQHYPVLSPFYTEYEKNFHASSYVNFAQNTWPALPLALCGIYGLMIVVGTKVMESRPKHEWKTALACWNLLLSVFSFCGMLRTVPHLLQNVTTLPFKDTICRHPAETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAVMYAYYYLTAIKAWPSWIPPSIITVAQISQMMVGVGICVASFYYLYTDPEHCEVKPQNVYSGALMYGSYLYLFCDFFVRRFLRGGKPRLGEERSAVLTMTKKIKDM 319
BLAST of EWM29442.1 vs. NCBI_GenBank
Match: gi|256750562|gb|ACV21066.1| (fatty acid elongase [Nannochloropsis oculata]) HSP 1 Score: 577.785 bits (1488), Expect = 0.000e+0 Identity = 267/308 (86.69%), Postives = 289/308 (93.83%), Query Frame = 0
Query: 10 KLFWGEMPKIIPYRSVPDNVPFTQLFQHYPVLSPFYTEYEKNFHASSYVNFAQNTWPALPLALCGIYGLMIVVGTKVMESRPKHEWKTALACWNLLLSVFSFCGMLRTVPHLLHNVTTLPFKDTICRHPAETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAVMYAYYYLTAIKAWPSWIPPSIITVAQISQMMVGVGICVASFYYLYTDPEHCEVKPQNVYSGALMYGSYLYLFCDFFVRRFLRGGKPRLGEERSAVLTMTKKIK 317
K + KI+PY+S+PD VPFTQLFQHYPVL P YT+YEKNF+AS+YV FAQ+TWP LPLALCG+Y LMI+VGTKVM SRPKHEWKTALACWNL+LS+FSFCGM+RTVPHLLHNV TLPFKDTICRHPAETYGEGACG+WVMLFI+SKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHA+MYAYYYLTAI AWP WIPPSIITVAQISQM+VGVGIC +SFY+LYTDPEHC+VK QNVY+GALMYGSYLYLFCDFFVRRFLRGGKPRLGEE+SAVLTM KKIK
Sbjct: 12 KFLKADPSKIVPYKSIPDKVPFTQLFQHYPVLDPLYTQYEKNFYASTYVKFAQDTWPVLPLALCGMYALMIIVGTKVMVSRPKHEWKTALACWNLMLSIFSFCGMIRTVPHLLHNVATLPFKDTICRHPAETYGEGACGMWVMLFIFSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAIMYAYYYLTAINAWPKWIPPSIITVAQISQMIVGVGICASSFYFLYTDPEHCQVKRQNVYAGALMYGSYLYLFCDFFVRRFLRGGKPRLGEEKSAVLTMAKKIK 319
BLAST of EWM29442.1 vs. NCBI_GenBank
Match: gi|553184970|ref|XP_005854181.1| (fatty-acyl [Nannochloropsis gaditana CCMP526] >gi|422294882|gb|EKU22182.1| fatty-acyl [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 545.428 bits (1404), Expect = 0.000e+0 Identity = 270/319 (84.64%), Postives = 272/319 (85.27%), Query Frame = 0
Query: 1 MHNLSEAFSKLFWGEMPKIIPYRSVPDNVPFTQLFQHYPVLSPFYTEYEKNFHASSYVNFAQNTWPALPLALCGIYGLMIVVGTKVMESRPKHEWKTALACWNLLLSVFSFCGMLRTVPHLLHNVTTLPFKDTICRHPAETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAVMYAYYYLTAIKAWPSWIPPSIITVAQISQMMVGVGICVASFYYLYTDPEHCEVKPQNVYSGALMYGSYLYLFCDFFVRRFLRGGKPRLGEERSAVLTMTKKIKDI 319
M+NLSEAFSKL WGEMPKIIPYRSVPDNVPFTQLFQHYPVLSPFYTEYEKNFHASSYVNFAQNTWPALPLALCGIYGLMIVVGTKVMESRPKHEWKTALACWNLLLSVFSFCGMLRTVPHLL NVTTLPFKDTICRHPAETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQ TAIKAWPSWIPPSIITVAQISQMMVGVGICVASFYYLYTDPEHCEVKPQNVYSGALMYGSYLYLFCDFFVRRFLRGGKPRLGEERSAVLTMTKKIKD+
Sbjct: 1 MNNLSEAFSKLIWGEMPKIIPYRSVPDNVPFTQLFQHYPVLSPFYTEYEKNFHASSYVNFAQNTWPALPLALCGIYGLMIVVGTKVMESRPKHEWKTALACWNLLLSVFSFCGMLRTVPHLLQNVTTLPFKDTICRHPAETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQ---------------------------------------------TAIKAWPSWIPPSIITVAQISQMMVGVGICVASFYYLYTDPEHCEVKPQNVYSGALMYGSYLYLFCDFFVRRFLRGGKPRLGEERSAVLTMTKKIKDM 274
BLAST of EWM29442.1 vs. NCBI_GenBank
Match: gi|585101438|gb|EWM21280.1| (fatty-acyl, partial [Nannochloropsis gaditana]) HSP 1 Score: 303.908 bits (777), Expect = 4.417e-100 Identity = 141/197 (71.57%), Postives = 166/197 (84.26%), Query Frame = 0
Query: 18 KIIPYRSVPDNVPFTQLFQHYPVLSPFYTEYEKNFHASSYVNFAQNTWPALPLALCGIYGLMIVVGTKVMESRPKHEWKTALACWNLLLSVFSFCGMLRTVPHLLHNVTTLPFKDTICRHPAETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAV 214
+I PY S +TQLFQH+P+L Y +EKNFHA +VNFA+ TWPALPLALC +Y LMIVVG++VM++R + +W+ LA WNL LS+FSFCGMLRTVPHLL+N+TTL F++T+C A+ YGEGACGLWVMLFI+SK+PELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYA SSTGLYFVAMNYSVHA+
Sbjct: 11 QIKPYFSEAAQTHYTQLFQHFPILERTYFPFEKNFHAEPFVNFAKATWPALPLALCTLYALMIVVGSRVMKNRERFDWRGPLAYWNLCLSLFSFCGMLRTVPHLLNNITTLSFRETVCTSAAKAYGEGACGLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYATESSTGLYFVAMNYSVHAI 207
BLAST of EWM29442.1 vs. NCBI_GenBank
Match: gi|1210521613|dbj|GAX19603.1| (elongation of very long chain fatty acids protein 6 [Fistulifera solaris]) HSP 1 Score: 282.337 bits (721), Expect = 2.364e-90 Identity = 138/269 (51.30%), Postives = 171/269 (63.57%), Query Frame = 0
Query: 27 DNVPFTQLFQHYPVLSPFYTEYEKNFHASSYVNFAQNTWPALPLALCGIYGLMIVVGTKVMESRPKHEWKTALACWNLLLSVFSFCGMLRTVPHLLHNVTTLPFKDTICRHPAETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAVMYAYYYLTAIKAWPSWIPPSIITVAQISQMMVGVGICVASFYYLYTDPEHCEVKPQNVYSGALMYGSYLYLFCDFFVRRFL 295
DN+ + + YP + YT +EK + +N+ + P +P+A C IY + I G R + W+ LA WNL LSVFSF GMLRT PHL HN+T L F+D +C P TYG G+ GLWV LFI SK PEL+DT FIV K L FLHWYHHITVLL+CWHSY TS TG+ F AMNY+VHA MY YY+L A++ P W P +IT QISQM+VGV + S+YY TD E C + N + LMYGSYL+LFC FF R+
Sbjct: 12 DNLEYREFSCLYPQVEHLYTSFEKFYDPIPLLNWMKGQ-PGIPVAACIIYAVSIYYGQAYFAKRDRWNWRNTLAVWNLFLSVFSFVGMLRTAPHLFHNLTHLSFRDNMCLDPRTTYGSGSTGLWVQLFILSKFPELIDTFFIVIHKKPLIFLHWYHHITVLLYCWHSYVTTSPTGIIFTAMNYTVHATMYGYYFLMALRMKPKWFNPMVITAMQISQMVVGVATTIVSYYYFLTDAE-CALDRGNNIAAFLMYGSYLFLFCQFFFSRYF 278
BLAST of EWM29442.1 vs. NCBI_GenBank
Match: gi|1210531746|dbj|GAX09713.1| (elongation of very long chain fatty acids protein 6 [Fistulifera solaris]) HSP 1 Score: 272.322 bits (695), Expect = 1.743e-86 Identity = 135/261 (51.72%), Postives = 165/261 (63.22%), Query Frame = 0
Query: 35 FQHYPVLSPFYTEYEKNFHASSYVNFAQNTWPALPLALCGIYGLMIVVGTKVMESRPKHEWKTALACWNLLLSVFSFCGMLRTVPHLLHNVTTLPFKDTICRHPAETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAVMYAYYYLTAIKAWPSWIPPSIITVAQISQMMVGVGICVASFYYLYTDPEHCEVKPQNVYSGALMYGSYLYLFCDFFVRRFL 295
F Y +L +EK + +N+ + P +P+A C IY + I G R + W+ LA WNL LSVFSF GMLRT PHL HN+T L F+D +C P TYG G+ GLWV LFI SK PEL+DT FIV K L FLHWYHHITVLL+CWHSY TS TG+ F AMNY+VHA MY YY+L A++ P W P +IT QISQM+VGV + S+YY TD E C + N + LMYGSYL+LFC FF R+
Sbjct: 12 FSSYVLLCFALDSFEKFYDPIPLLNWMKGQ-PGIPVAACIIYAVSIYYGQAYFAKRDRWNWRYTLAVWNLFLSVFSFVGMLRTAPHLFHNLTHLSFRDNMCLDPRTTYGSGSTGLWVQLFILSKFPELIDTFFIVIHKKPLIFLHWYHHITVLLYCWHSYVTTSPTGIIFTAMNYTVHATMYGYYFLMALRMKPKWFNPMVITAMQISQMVVGVATTIVSYYYFLTDAE-CALDRGNNIAAFLMYGSYLFLFCQFFFSRYF 270
BLAST of EWM29442.1 vs. NCBI_GenBank
Match: gi|219129110|ref|XP_002184740.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403849|gb|EEC43799.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 266.929 bits (681), Expect = 6.917e-85 Identity = 124/245 (50.61%), Postives = 167/245 (68.16%), Query Frame = 0
Query: 66 PALPLALCGIYGLMIVVGTKVMESRPKHEWKTALACWNLLLSVFSFCGMLRTVPHLLHNVTTLPFKDTICRHPAETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAVMYAYYYLTAIKAWPSWIPPSIITVAQISQMMVGVGICVASFYYLYTDPEH--CEVKPQNVYSGALMYGSYLYLFCDFFVRRFLRGGKPRLGEERSA 308
P +P+ C +YGL++V G +R +T+LA WNL L++FS GMLRT P L+HN+ TL ++ +C +P TYG G+ GLWV LFI SK PEL+DTVFI+ K KL FLHWYHHITVLL+CWHSY S G++FV MNY+VHA MY YY+L AI+A P W+ P I+T QISQM+VGV + + FYY +H C +K +N + +MYGSYL+LF FFV R++ G + + +++A
Sbjct: 5 PLVPIGACLLYGLLMVAGQAYFRTREPLRARTSLAAWNLFLALFSLVGMLRTFPQLVHNLATLTLRENLCANPQATYGSGSTGLWVQLFILSKFPELIDTVFIIVNKKKLIFLHWYHHITVLLYCWHSYVTKSPPGIFFVVMNYTVHASMYGYYFLMAIRARPRWLNPMIVTTMQISQMVVGVAVTLLGFYYSARAADHQSCRIKRENNTAAFVMYGSYLFLFLQFFVGRYV-GTQSPVASKKTA 248
BLAST of EWM29442.1 vs. NCBI_GenBank
Match: gi|224008873|ref|XP_002293395.1| (long chain fatty acid elongase [Thalassiosira pseudonana CCMP1335] >gi|220970795|gb|EED89131.1| long chain fatty acid elongase [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 263.462 bits (672), Expect = 8.959e-83 Identity = 127/259 (49.03%), Postives = 171/259 (66.02%), Query Frame = 0
Query: 39 PVLSPFYTEYEKNFHASSYVNFAQNTWPALPLALCGIYGLMIVVGTKVMESRPKHEWKTALACWNLLLSVFSFCGMLRTVPHLLHNVTTLPFKDTICRHPAETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAVMYAYYYLTAIKAWPSWIPPSIITVAQISQMMVGVGICVASFYYLYTDP---EHCEVKPQNVYSGALMYGSYLYLFCDFFVRRF 294
P+L Y +E+ + + + + Q+ P +P+ C Y ++IV+G M+ RP W+ LA WNL LS+FS+ G +RT P L +N+TT +D +C PA YG G+ GLWV LFI SK PEL+DT FIV K L FLHWYHHITVLL+CWHSY TS +GL+FV MNYSVHAVMY YY+L A+K P W P +T Q+SQM +GVG+ + +FYY Y++P + C ++ +N + +MYGSY YLF FFV R+
Sbjct: 30 PLLGATYLPFERFYDPVATLTWMQDR-PMIPIIACVAYVVLIVLGRAYMKDRPAWSWRRILAVWNLSLSLFSWIGAIRTAPQLYYNLTTYSLRDNLCDDPAALYGSGSTGLWVQLFILSKFPELLDTFFIVIHKKPLIFLHWYHHITVLLYCWHSYVTTSPSGLFFVVMNYSVHAVMYGYYFLMAVKFRPKWFNPMFVTFMQLSQMFIGVGVTIVAFYY-YSNPILGKTCHIRKENNVAAFVMYGSYFYLFAQFFVARY 286
BLAST of EWM29442.1 vs. NCBI_GenBank
Match: gi|1173935177|gb|OQR86335.1| (elongation of very long chain fatty acids protein [Achlya hypogyna]) HSP 1 Score: 251.521 bits (641), Expect = 1.582e-78 Identity = 134/280 (47.86%), Postives = 179/280 (63.93%), Query Frame = 0
Query: 28 NVPFTQLFQHYPVLSPFYT-EYEKNFHASSYVNFAQNTWPALPLALCGIYGLMIVVGTKVMESRPKHEWKTALACWNLLLSVFSFCGMLRTVPHLLHNVTTLPFKDTICRHPAETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAVMYAYYYLTAIKAWPSWIPPSIITVAQISQMMVGVGICVASFYYLYTDPEHCEVKPQNVYSGALMYGSYLYLFCDFFVRRFLRGGKPRLGEER 306
PF L + YP L+P Y +E +F S +F ++ A + LC +Y ++ G M +R ++ KTALA WNLLL+ FSFCG +RTVP LL ++ + +IC + YG G GLWV LFI+SKVPELVDT FIV RK L FLHWYHHITVL+FCWH++AV S++GLYFVAMNYSVHA+MY YY+LTA+ P W ++T Q+SQM+VGV +C S +Y++ + C V N+ G LMY SYL LF FF+ R+ K + + +
Sbjct: 2 RAPF--LHEAYPALAPLYPFAFENDFVLSWQPSFCADSMQA-AIGLCALYCVLCYAGRHWMATRAPYDLKTALAGWNLLLATFSFCGAVRTVPFLLDSIYQRGWYQSICSEATDHYGNGPTGLWVALFIFSKVPELVDTFFIVVRKKPLIFLHWYHHITVLMFCWHAFAVRSASGLYFVAMNYSVHAIMYFYYFLTAVGYRPRW--ALMVTAVQLSQMVVGVAVCTMSVFYIHRG-DSCHVDHANLKWGILMYSSYLVLFLKFFIERYCFAPKKSIKKTQ 275 The following BLAST results are available for this feature:
BLAST of EWM29442.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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