EWM29476.1, cds1195 (CDS) Nannochloropsis gaditana

Overview
NameEWM29476.1
Unique Namecds1195
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:9565..9670 +
Alignment locationCM002457.1:9882..10033 +
Alignment locationCM002457.1:10156..10242 +
Alignment locationCM002457.1:10399..10959 +
Alignment locationCM002457.1:11181..11283 +
Alignment locationCM002457.1:11438..11580 +
Alignment locationCM002457.1:11684..11785 +
Alignment locationCM002457.1:11864..11941 +
Alignment locationCM002457.1:12091..12264 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29476.1
Productcop9 signalosome complex subunit 2
Orig transcript idgnl|cribi|Naga_100128g6.9398.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:9565..9670 +
CM002457.1supercontigCM002457.1:9882..10033 +
CM002457.1supercontigCM002457.1:10156..10242 +
CM002457.1supercontigCM002457.1:10399..10959 +
CM002457.1supercontigCM002457.1:11181..11283 +
CM002457.1supercontigCM002457.1:11438..11580 +
CM002457.1supercontigCM002457.1:11684..11785 +
CM002457.1supercontigCM002457.1:11864..11941 +
CM002457.1supercontigCM002457.1:12091..12264 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR000717PCI_dom
IPR013143PAM
Homology
BLAST of EWM29476.1 vs. NCBI_GenBank
Match: gi|585112017|gb|EWM29476.1| (cop9 signalosome complex subunit 2 [Nannochloropsis gaditana])

HSP 1 Score: 1021.54 bits (2640), Expect = 0.000e+0
Identity = 501/501 (100.00%), Postives = 501/501 (100.00%), Query Frame = 0
Query:    1 MDEDEKDMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSPSLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILKTHRQALTKDTFVRANIDQLLITIRTQVITKLLVPYTRVSLAHIARELNDIPEEDVESLLVSLILDGKVGQGVRLLRAEERTTW 501
            MDEDEKDMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSPSLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILKTHRQALTKDTFVRANIDQLLITIRTQVITKLLVPYTRVSLAHIARELNDIPEEDVESLLVSLILDGKVGQGVRLLRAEERTTW
Sbjct:    1 MDEDEKDMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSPSLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILKTHRQALTKDTFVRANIDQLLITIRTQVITKLLVPYTRVSLAHIARELNDIPEEDVESLLVSLILDGKVGQGVRLLRAEERTTW 501          
BLAST of EWM29476.1 vs. NCBI_GenBank
Match: gi|585112018|gb|EWM29477.1| (cop9 signalosome complex subunit 2 [Nannochloropsis gaditana])

HSP 1 Score: 857.825 bits (2215), Expect = 0.000e+0
Identity = 419/420 (99.76%), Postives = 419/420 (99.76%), Query Frame = 0
Query:    1 MDEDEKDMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSPSLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILKTH 420
            MDEDEKDMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSPSLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILK H
Sbjct:    1 MDEDEKDMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSPSLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILKVH 420          
BLAST of EWM29476.1 vs. NCBI_GenBank
Match: gi|553179429|ref|XP_005852701.1| (cop9 signalosome complex subunit 2 [Nannochloropsis gaditana CCMP526] >gi|553191278|ref|XP_005855354.1| cop9 signalosome complex subunit 2 [Nannochloropsis gaditana CCMP526] >gi|422293711|gb|EKU21011.1| cop9 signalosome complex subunit 2 [Nannochloropsis gaditana CCMP526] >gi|422295832|gb|EKU23131.1| cop9 signalosome complex subunit 2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 608.986 bits (1569), Expect = 0.000e+0
Identity = 341/501 (68.06%), Postives = 344/501 (68.66%), Query Frame = 0
Query:   15 FEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSPSLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILK--------------------------THRQALTKDTFVRANIDQLLITIRTQVITKLLVPYTRVSLAHIARELNDIPEEDVESLLVSLILDGKVGQG 489
            FEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPAS H ARAAVTQ                       R  + T L                                KLGHLLLSEAMQKEG                                           EESVRLLGRLQRLIKDLLKSCEGP EGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITW                       DYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILK                          THRQALT+DTFVRA+IDQLLITIRTQVITKLLVPYTRVSLAHIARELNDIPEEDVESLLVSLILDGK  Q 
Sbjct:   15 FEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASSHSARAAVTQ-----------------------RLWFKTNL--------------------------------KLGHLLLSEAMQKEG-------------------------------------------EESVRLLGRLQRLIKDLLKSCEGPLEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITW-----------------------DYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILKVLVCLLLYALLPPCPRPLISPLSSLQTHRQALTRDTFVRAHIDQLLITIRTQVITKLLVPYTRVSLAHIARELNDIPEEDVESLLVSLILDGKTRQA 394          
BLAST of EWM29476.1 vs. NCBI_GenBank
Match: gi|357131345|ref|XP_003567299.1| (PREDICTED: COP9 signalosome complex subunit 2 [Brachypodium distachyon] >gi|721633973|ref|XP_010230789.1| PREDICTED: COP9 signalosome complex subunit 2 [Brachypodium distachyon] >gi|721633976|ref|XP_010230790.1| PREDICTED: COP9 signalosome complex subunit 2 [Brachypodium distachyon] >gi|944068460|gb|KQK03944.1| hypothetical protein BRADI_2g10780 [Brachypodium distachyon] >gi|944068461|gb|KQK03945.1| hypothetical protein BRADI_2g10780 [Brachypodium distachyon] >gi|944068462|gb|KQK03946.1| hypothetical protein BRADI_2g10780 [Brachypodium distachyon])

HSP 1 Score: 370.163 bits (949), Expect = 9.401e-121
Identity = 210/499 (42.08%), Postives = 299/499 (59.92%), Query Frame = 0
Query:    7 DMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSP--SLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILKTHRQALTKDTFVRANIDQLLITIRTQVITKLLVPYTRVSLAHIARELNDIPEEDVESLLVSLILD----GKVGQGVRLLRAEERT 499
            D + E+Y FEYSD+E EE DV +EN YY +KG+  + D  GA+ G   V+R+E   E+GEWGFKALKQ+VK+ + LG+Y+ M++ Y  +L +           ++AVT+N +EK +++++D VS S+S   SLL+  Y TTL  LE                 +N+RLWFKTNLKL  +        + GE+                                               GR+ +++K+L KSC+       EDGS   D  K+GTQLLEVYA+++Q++   K+++KLK+LY+ AL I   +PHPR +G+++ECGG+M+M E+ +  A   FF +FK YDEAG+PRR   LKYLVLA+ML  S ++PFD QEAKPYK + E++AM NLI A+Q +D+  FE ILKT+R+ +  D F+R  I+ LL  IRTQV+ KL+ PYTR+ +  I++ELN  PE+DVE LLVSLILD    G + Q  +LL   +R+
Sbjct:    2 DADMEDYGFEYSDDEPEEQDVDIENQYYNSKGM-VETDAEGALAGFDAVVRMEP--EKGEWGFKALKQTVKIYYKLGKYKEMMDAYREMLTY----------IKSAVTRNYSEKCINNIMDFVSGSASQNFSLLQEFYQTTLKALEEA---------------KNERLWFKTNLKLCKIWF------DMGEY-----------------------------------------------GRMSKILKELHKSCQK------EDGS---DDQKKGTQLLEVYAIEIQMYTETKNNKKLKELYQRALSIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNPRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQKNDIMEFEKILKTNRRTIMDDPFIRNYIEDLLKNIRTQVLLKLIKPYTRIRIPFISQELN-FPEKDVEQLLVSLILDNRVQGHIDQVNKLLECGDRS 409          
BLAST of EWM29476.1 vs. NCBI_GenBank
Match: gi|670429189|ref|XP_008655477.1| (COP9 signalosome complex subunit 2 isoform X2 [Zea mays] >gi|1142831157|gb|AQK89243.1| COP9 signalosome complex subunit 2 [Zea mays])

HSP 1 Score: 369.007 bits (946), Expect = 2.361e-120
Identity = 210/499 (42.08%), Postives = 299/499 (59.92%), Query Frame = 0
Query:    7 DMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSP--SLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILKTHRQALTKDTFVRANIDQLLITIRTQVITKLLVPYTRVSLAHIARELNDIPEEDVESLLVSLILD----GKVGQGVRLLRAEERT 499
            D + E+Y FEYSDEE EE DV +EN YY +KGL  + D  GA+ G  +V+ +E   E+ EWGFKALKQ+VK+ + LG+Y+ M++ Y  +L +           ++AVT+N +EK +++++D VS S+S   SLL+  Y TTL  LE                 +N+RLWFKTNLKL  +        + GE+                                               GR+ +++K+L KSC+       EDGS   D  K+GTQLLEVYA+++Q++   K+++KLK+LY+ AL I   +PHPR +G+++ECGG+M+M E+ ++ A   FF +FK YDEAG+PRR   LKYLVLA+ML  S ++PFD QEAKPYK + E++AM NLI A+Q +D+  FE ILK++R+ +  D F+R  I+ LL  IRTQV+ KL+ PYTR+ +  I++ELN  PE+DVE LLVSLILD    G + Q  +LL   ER+
Sbjct:    4 DADMEDYGFEYSDEEPEEQDVDIENQYYNSKGL-VETDPEGALAGFDQVVSMEP--EKAEWGFKALKQTVKLYYKLGKYKEMMDAYREMLTY----------IKSAVTRNYSEKCINNIMDFVSGSASQNFSLLQEFYQTTLKALEEA---------------KNERLWFKTNLKLCKIWF------DMGEY-----------------------------------------------GRMSKILKELHKSCQR------EDGS---DDQKKGTQLLEVYAIEIQMYTETKNNKKLKELYQRALSIKSAIPHPRIMGIIRECGGKMHMAERQWDEAATDFFEAFKNYDEAGNPRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDSEILAMTNLIAAYQKNDIMEFEKILKSNRRTIMDDPFIRNYIEDLLKNIRTQVLLKLIKPYTRIRIPFISQELN-FPEKDVEQLLVSLILDNRIQGHIDQVNKLLERGERS 411          
BLAST of EWM29476.1 vs. NCBI_GenBank
Match: gi|242057017|ref|XP_002457654.1| (COP9 signalosome complex subunit 2 [Sorghum bicolor] >gi|241929629|gb|EES02774.1| hypothetical protein SORBI_3003G132000 [Sorghum bicolor])

HSP 1 Score: 367.466 bits (942), Expect = 1.252e-119
Identity = 210/499 (42.08%), Postives = 298/499 (59.72%), Query Frame = 0
Query:    7 DMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSP--SLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILKTHRQALTKDTFVRANIDQLLITIRTQVITKLLVPYTRVSLAHIARELNDIPEEDVESLLVSLILD----GKVGQGVRLLRAEERT 499
            D + E+Y FEYSDEE EE DV +EN YY +KGL  + D  GA+ G  +V+ +E   E+ EWGFKALKQ+VK+ + LG+Y+ M++ Y  +L +           ++AVT+N +EK +++++D VS S+S   SLL+  Y TTL  LE                 +N+RLWFKTNLKL  +        + GE+                                               GR+ +++K+L KSC+       EDGS   D  K+GTQLLEVYA+++Q++   K+++KLK+LY+ AL I   +PHPR +G+++ECGG+M+M E+ +  A   FF +FK YDEAG+PRR   LKYLVLA+ML  S ++PFD QEAKPYK + E++AM NLI A+Q +D+  FE ILK++R+ +  D F+R  I+ LL  IRTQV+ KL+ PYTR+ +  I++ELN  PE+DVE LLVSLILD    G + Q  +LL   ER+
Sbjct:    4 DADMEDYGFEYSDEEPEEQDVDIENQYYNSKGL-VETDPEGALAGFDQVVTMEP--EKAEWGFKALKQTVKLYYKLGKYKEMMDAYREMLTY----------IKSAVTRNYSEKCINNIMDFVSGSASQNFSLLQEFYQTTLKALEEA---------------KNERLWFKTNLKLCKIWF------DMGEY-----------------------------------------------GRMSKILKELHKSCQR------EDGS---DDQKKGTQLLEVYAIEIQMYTETKNNKKLKELYQRALSIKSAIPHPRIMGIIRECGGKMHMAERQWAEAATDFFEAFKNYDEAGNPRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQKNDIMEFEKILKSNRRTIMDDPFIRNYIEDLLKNIRTQVLLKLIKPYTRIRIPFISQELN-FPEKDVEQLLVSLILDNRIQGHIDQVNKLLERGERS 411          
BLAST of EWM29476.1 vs. NCBI_GenBank
Match: gi|1070889336|gb|OEL14181.1| (COP9 signalosome complex subunit 2, partial [Dichanthelium oligosanthes])

HSP 1 Score: 366.696 bits (940), Expect = 1.996e-119
Identity = 208/499 (41.68%), Postives = 299/499 (59.92%), Query Frame = 0
Query:    7 DMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSP--SLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILKTHRQALTKDTFVRANIDQLLITIRTQVITKLLVPYTRVSLAHIARELNDIPEEDVESLLVSLILD----GKVGQGVRLLRAEERT 499
            D + E+Y FEYSDEE EE DV +EN YY +KG+  + D  GA+ G  +V+++E   E+ EWGFKALKQ+VK+ + LG+Y+ M++ Y  +L +           ++AVT+N +EK +++++D VS S+S   SLL+  Y TTL  LE                 +N+RLWFKTNLKL  +        + GE+                                               GR+ +++K+L KSC+       EDGS   D  K+GTQLLEVYA+++Q++   K+++KLK+LY+ AL I   +PHPR +G+++ECGG+M+M E+ +  A   FF +FK YDEAG+PRR   LKYLVLA+ML  S ++PFD QEAKPYK + E++AM NLI A+Q +D+  FE ILK++R+ +  D F+R  I+ LL  IRTQV+ KL+ PYTR+ +  I++ELN  PE+DVE LLVSLILD    G + Q  +LL   +R+
Sbjct:    1 DADMEDYGFEYSDEEPEEQDVDIENQYYNSKGM-VETDPEGALAGFDQVVKMEP--EKAEWGFKALKQTVKLYYKLGKYKEMMDAYREMLTY----------IKSAVTRNYSEKCINNIMDFVSGSASQNFSLLQEFYQTTLKALEEA---------------KNERLWFKTNLKLCKIWF------DMGEY-----------------------------------------------GRMSKILKELHKSCQR------EDGS---DDQKKGTQLLEVYAIEIQMYTETKNNKKLKELYQRALSIKSAIPHPRIMGIIRECGGKMHMAERQWAEAATDFFEAFKNYDEAGNPRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQKNDIMEFEKILKSNRRTIMDDPFIRNYIEDLLKNIRTQVLLKLIKPYTRIRIPFISQELN-FPEKDVEQLLVSLILDNRIQGHIDQVNKLLERGDRS 408          
BLAST of EWM29476.1 vs. NCBI_GenBank
Match: gi|703095873|ref|XP_010095657.1| (COP9 signalosome complex subunit 2 [Morus notabilis] >gi|587872504|gb|EXB61746.1| COP9 signalosome complex subunit 2 [Morus notabilis])

HSP 1 Score: 366.696 bits (940), Expect = 2.877e-119
Identity = 210/499 (42.08%), Postives = 298/499 (59.72%), Query Frame = 0
Query:    7 DMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSP--SLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILKTHRQALTKDTFVRANIDQLLITIRTQVITKLLVPYTRVSLAHIARELNDIPEEDVESLLVSLIL----DGKVGQGVRLLRAEERT 499
            D + E+Y FEYSDEE EE DV +EN YY +KGL  + D  GA+ G  EV+R+E   E+ EWGFKALKQ+VK+ + LG+Y+ M+E Y  +L +           ++AVT+N +EK +++++D VS S+S   SLLR  Y TTL  LE                 +N+RLWFKTNLKL  +        + GE+                                               GR+ +++K+L KSC+       EDGS   D  K+G+QLLEVYA+++Q++   K+++KLK LY+ AL I   +PHPR +G+++ECGG+M+M E+ +  A   FF +FK YDEAG+ RR   LKYLVLA+ML  S ++PFD QEAKPYK + E++AM NLI A+Q +++  FE ILK++R+ +  D F+R  I+ LL  +RTQV+ KL+ PYTR+ +  I++ELN +PE+DVE LLVSLIL    DG + Q  RLL   +R+
Sbjct:   10 DADMEDYGFEYSDEEPEEQDVDIENQYYNSKGL-VETDPEGALAGFAEVVRMEP--EKAEWGFKALKQTVKLYYRLGRYKEMMEAYRVMLTY----------IKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEDA---------------KNERLWFKTNLKLCKIWF------DMGEY-----------------------------------------------GRMSKILKELHKSCQK------EDGS---DDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWAEAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEILEFEKILKSNRRTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELN-VPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 417          
BLAST of EWM29476.1 vs. NCBI_GenBank
Match: gi|1149783219|ref|XP_020154253.1| (COP9 signalosome complex subunit 2 [Aegilops tauschii subsp. tauschii] >gi|326496011|dbj|BAJ90627.1| predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 366.311 bits (939), Expect = 2.946e-119
Identity = 207/499 (41.48%), Postives = 299/499 (59.92%), Query Frame = 0
Query:    7 DMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSP--SLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILKTHRQALTKDTFVRANIDQLLITIRTQVITKLLVPYTRVSLAHIARELNDIPEEDVESLLVSLILD----GKVGQGVRLLRAEERT 499
            D + E+Y FEYSD+E EE DV +EN YY +KG+  + D  GA+ G   V+R+E   E+ EWGFKALKQ+VK+ + LG+Y+ M++ Y  +L +           ++AVT+N +EK +++++D VS S+S   +LL+  Y TTL  LE                 +N+RLWFKTNLKL  +        + GE+                                               GR+ +++K+L KSC+       EDGS   D  K+GTQLLEVYA+++Q++   K+++KLK+LY+ AL I   +PHPR +G+++ECGG+M+M E+ +  A   FF +FK YDEAG+PRR   LKYLVLA+ML  S ++PFD QEAKPYK + E++AM NLI A+Q +D+  FE ILK++R+ +  D F+R  I+ LL  IRTQV+ KL+ PYTR+ +  I++ELN +PE+DVE LLVSLILD    G + Q  +LL   +R+
Sbjct:    4 DADMEDYGFEYSDDEPEEQDVDIENQYYNSKGM-VETDPEGALAGFDAVVRMEP--EKAEWGFKALKQTVKLYYKLGKYKEMMDAYREMLTY----------IKSAVTRNYSEKCINNIMDFVSGSASQHFNLLQEFYQTTLKALEEA---------------KNERLWFKTNLKLCKIWF------DMGEY-----------------------------------------------GRMSKILKELHKSCQK------EDGS---DDQKKGTQLLEVYAIEIQMYTETKNNKKLKELYQRALSIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNPRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQKNDIMEFEKILKSNRRTIMDDPFIRNYIEDLLKNIRTQVLLKLIKPYTRIRIPFISQELN-VPEKDVEQLLVSLILDNRVQGHIDQVNKLLECGDRS 411          
BLAST of EWM29476.1 vs. NCBI_GenBank
Match: gi|223943737|gb|ACN25952.1| (unknown [Zea mays] >gi|1142673359|gb|ONM31402.1| COP9 signalosome complex subunit 2 [Zea mays])

HSP 1 Score: 366.311 bits (939), Expect = 3.505e-119
Identity = 209/499 (41.88%), Postives = 298/499 (59.72%), Query Frame = 0
Query:    7 DMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSP--SLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILKTHRQALTKDTFVRANIDQLLITIRTQVITKLLVPYTRVSLAHIARELNDIPEEDVESLLVSLILD----GKVGQGVRLLRAEERT 499
            D + E+Y FEYSDEE EE DV +EN YY +KGL  + D  GA+ G  +V+ +E   E+ EWGFKALKQ+VK+ + LG+Y+ M++ Y  +L +           ++AVT+N +EK +++++D VS S+S   +LL+  Y TTL  LE                 +N+RLWFKTNLKL  +        + GE+                                               GR+ +++K+L KSC+       EDGS   D  K+GTQLLEVYA+++Q++   K+++KLK+LY+ AL I   +PHPR +G+++ECGG+M+M E+ +  A   FF +FK YDEAG+PRR   LKYLVLA+ML  S ++PFD QEAKPYK + E++AM NLI A+Q +D+  FE ILK++R+ +  D F+R  I+ LL  IRTQV+ KL+ PYTR+ +  I++ELN  PE+DVE LLVSLILD    G + Q  +LL   ER+
Sbjct:    4 DADMEDYGFEYSDEEPEEQDVDIENQYYNSKGL-VETDPEGALAGFDQVVSMEP--EKAEWGFKALKQTVKLYYKLGKYKEMMDAYREMLTY----------IKSAVTRNYSEKCINNIMDFVSGSASQNFTLLQEFYQTTLKALEEA---------------KNERLWFKTNLKLCKIWF------DIGEY-----------------------------------------------GRMSKILKELHKSCQR------EDGS---DDQKKGTQLLEVYAIEIQMYTETKNNKKLKELYQRALSIKSAIPHPRIMGIIRECGGKMHMAERQWAEAATDFFEAFKNYDEAGNPRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQKNDIMEFEKILKSNRRTIMDDPFIRNYIEDLLKNIRTQVLLKLIKPYTRIRIPFISQELN-FPEKDVEQLLVSLILDNRIQGHIDQVNKLLERGERS 411          
The following BLAST results are available for this feature:
BLAST of EWM29476.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112017|gb|EWM29476.1|0.000e+0100.00cop9 signalosome complex subunit 2 [Nannochloropsi... [more]
gi|585112018|gb|EWM29477.1|0.000e+099.76cop9 signalosome complex subunit 2 [Nannochloropsi... [more]
gi|553179429|ref|XP_005852701.1|0.000e+068.06cop9 signalosome complex subunit 2 [Nannochloropsi... [more]
gi|357131345|ref|XP_003567299.1|9.401e-12142.08PREDICTED: COP9 signalosome complex subunit 2 [Bra... [more]
gi|670429189|ref|XP_008655477.1|2.361e-12042.08COP9 signalosome complex subunit 2 isoform X2 [Zea... [more]
gi|242057017|ref|XP_002457654.1|1.252e-11942.08COP9 signalosome complex subunit 2 [Sorghum bicolo... [more]
gi|1070889336|gb|OEL14181.1|1.996e-11941.68COP9 signalosome complex subunit 2, partial [Dicha... [more]
gi|703095873|ref|XP_010095657.1|2.877e-11942.08COP9 signalosome complex subunit 2 [Morus notabili... [more]
gi|1149783219|ref|XP_020154253.1|2.946e-11941.48COP9 signalosome complex subunit 2 [Aegilops tausc... [more]
gi|223943737|gb|ACN25952.1|3.505e-11941.88unknown [Zea mays] >gi|1142673359|gb|ONM31402.1| C... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1196rna1196Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications