rna1159, rna1159 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1159
Unique Name	rna1159
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2235
Alignment location	CM002456.1:1353998..1356674 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100006g7.8703.mrna
Orig protein id	gnl\|cribi\|Naga_100006g7.8703
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1353998..1356674 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g7	gene1116	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29614.1	cds1158	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1159	rna1159-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1353998..1356674-
coding sequence from alignment at CM002456.1:1353998..1356674-

mRNA sequence

>rna1159 ID=rna1159|Name=rna1159|organism=Nannochloropsis gaditana|type=mRNA|length=2235bp
TGTTTTGATCAGATTATTCGCGTCGTGGATTGGGGGATCACGTCTTGACT
GCCCACATTTTGTCTACATAAGCCGTCCTGTACATGGCACCCAAAAGTAT
GTTTGCCAAGAGATATGTGACTTCCCCCTTCCTTCGGATTCCCCCATAGC
TTGCAGTGAGCTGTATATTATGTCCTGTTATATTTGCGAGCATATCTGCC
CTTAACGTGCACGCATATGTCCGTCTATTCATGTATGCAAGGAGCGAGGT
CATGAGTGTCGGGAGATTTATGTGTTTCTTAATACACGACCTTGGCTCAT
TCGAGGCAAAAGTCATATAAGCGCATATTTATAGTCAATCGTCCACGATC
CAGGGCATCTGCTTTTTTATGATCTTACATAAACATCTACCCTTACATCT
CTCGCAGAGCTCATCAGAGTTCATCTTGAATTGCCTTGCACGCCTGACTC
CTCCAATGACGACAAGTGAGGAGATCTCTCTGGAATATTACCGGATTTGC
TGCGCACTGCTACATCGCTGGTATTTCGTTGCACACAACAACCGAAATGA
TATCAGTGAAGCCTGTTCTAAAAGTGGAGCATCTTATGAAGAACTGCGAT
CCATTCTGAAATACCTTCGGGCTCACTATGTGGGTGGTTTTTTGACTGCG
CGCAAGCTGGGACAGGTTTCTGATGATCTGTTCGCCTACTATCTTTCCCT
GAAGCAGCAAAGGCGCCGTCGTACTGCTACAAAAAAAGACCACACGAATG
GTGGTGTAGATCTTTCTTTCACCCCTTTGTCTACGAGCAGCAGCAGACCC
ATCAAATCGACTGCAAGTGTGCATGAAACTGGTAATGCTGAGTCAAAACG
CAGTAAAAATAATGCTGTCAGCCGCTGGCTTCAAGCCCCCCTTTCCACAG
ACAACCAGAAGGCATCTTCTTTCAACTGCGACCATGAGCGGCCTTACCAT
TCACTATCGTTCAGTCAACGCCCACCTTTTCGCCTTGTGCATCGTCTCCA
CTCCTCCCCTCGTGCCACGTCGACAAACAAAAGTAGTGTACCGGCTGCTA
GACTTCATAATTATTCAACGCATGCATCGCCTTCCTTTCTTTACCCTCAA
TTGGCTATGTCTTTGAAAGGCAATAGCCCTTTTGATATTCGTTCAGGCGG
ACAGCAGCAGCAGCAGCAGCAGCAGCAGGCACTGGTTCACCCCTTCCCTA
TTACCTACCCTACTGACTACGGCCTTAAGGTCATTCACCACCGATATCAG
TATCAGGTGCGGCCGTTTGACGAGCCTGTAATGCTCTTATCTTCTGCATT
ACGGGCGAGATCGCAAGAACAGCTGCAACAGCAACCACACTATGGCACGC
GTACGTCTCAAAGCACGTCGCCTTCCAGACAGCAGTTGACCATCACACCG
AGCCGGAGCACTCTTGAAAGCACCACACTGACCTCGAATTGTGACAACGC
GAGCAGCTCACTACAGCCGTGTGGCGCCGTTGCCGCAATTTTATCTAACA
TGTCGCCTTCATCTACGAGCTACCATGACGATGAAAAAAAGGGACAAATT
CTAGGATCCCCACTCAACGAAGATACCATCGTACAGAGCTTGGGCAGAGA
AGACACCGTTGACGGAGTAAGTGTCTGCACTCTCCCGCTCAAAGGCAATG
AGACCAAAAGGAATCTATCGAGAGCGAAAGATTGCAAAGATTATGGAGCT
GAGGGGTTCAAAAGACATCTTCCAATCGATGATGCCCGCTTGCCTTTGAA
AAAGCGTCGCTGCCATATTTCCCACAAGCACGATGACGTCTTAGCGGTCT
CTGTTCTTCTAGGATTAAAGATGCAAGGTTGACGGGGAGTAGATAGCATT
AACGTATACGTGACATGAGACGGAAGAAAAAGTGCATGGAGAAGATCTTA
ACAGTAAGAAATCATTAGAGGACTGTTACGCATGCAACCAGATTGTCAAA
TTGATGAGCTACAAATACCTGCAAATTCGTGGATGTTTACAAGTTGGGGG
TTATGTAGAGTTTACCTGCAGTTTCACATGAAATTTCGAATGAAGTTACA
CATGCATGATACCAAATACACCGATGTTTGACTTTTTTGCGGGCCCACAT
CCAATAGGACAGTATGTCAACTCTTTATCGAGGAAAGAGAGACCTAAGTC
TTATAGAAACAGTGGAAAATGTTGCTCTCTAGTCAGAGGGAGAGCTTGAA
AAGAATAGATACATTTACATTTGTTCGCGCACTTA

protein sequence of rna1159

>rna1159-protein ID=rna1159-protein|Name=rna1159|organism=Nannochloropsis gaditana|type=polypeptide|length=591bp
MTASEELSLRYYEVCCMLLQRWRYSTQNNREDMNDACIESGASYDELRSI
LKHLRAKYMAGFNNAQKQGRFIDDFYGYYTSTKRPRGRPPTAAGGTGNGV
KLPSSNIRAQQPSQPASSDMVTGAGDLMVESDSQSSNDGNAPVGGTGRLR
MPSARARKATAPYEAPLASTHSRSSSSSSASSTSSSRSRKASKSQPLAKR
YRHGSSEMVGYVGPEGNDYDNLQAYQEKAGRNQAEFERIDVGGSTRCRME
GKAGEELEDEDAVVVMLAPTGQHERQSSLFDLVTAVEEASGKTDGNPVAK
SRAISPALDDHGLLLLGLKAHPVTFSHAKTSPSTTAGTNSAKSLLETQSK
QEATPSERTSCNNSVGSSGETSLTKVPPSSSSLQSALGGKALEGRVSASF
HTQPAKTSSIYPGHPLPPQLANMPPRLPYPPVTFQGHASHPQYYHPHHYF
HNLSTPYNQQPQQSVAYYNQYPPQKHERKTSEEQPAYCPQPHQQNSSSQA
DLLHASYSSTMSTHSLPAMSGHAVVDVVGPADTPTALSGTKIGTCKTVGS
NRGQGQEHHSRREGTDRTAQHIVGSMVRDMSGAAPAATVSY

mRNA from alignment at CM002456.1:1353998..1356674-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1159 ID=rna1159|Name=rna1159|organism=Nannochloropsis gaditana|type=mRNA|length=2677bp|location=Sequence derived from alignment at CM002456.1:1353998..1356674- (Nannochloropsis gaditana)
TCACAGGAACCATCTGAAATACCCGTACAAAGCTCATAGAATGACTGCTT
CAGAAGAACTTTCTCTCCGATACTATGAAGTGTGTTGCATGCTTCTCCAA
CGATGGCGGTACTCCACTCAAAACAACCGGGAGGATATGAATGATGCCTG
TATCGAGAGCGGTGCATCCTACGACGAATTGCGCTCCATTCTCAAGCACC
TCCGTGCCAAGTACATGGCTGGTTTCAACAATGCCCAGAAGCAAGGTCGA
TTTATCGACGATTTCTACGGCTACTACACTTCTACCAAGCGGCCTCGGGG
ACGGCCTCCGACCGCAGCGGGTGGGACTGGAAACGGGGTGAAACTGCCGT
CGAGCAACATCCGTGCCCAGCAACCGTCGCAGCCTGCCTCCTCAGACATG
GTCACTGGAGCCGGAGATTTGATGGTCGAGAGCGACAGCCAAAGCAGCAA
TGACGGAAATGCTCCTGTGGGTGGCACAGGGCGTTTGAGGATGCCTTCAG
CCCGGGCCCGCAAAGCCACAGCACCCTATGAGGCCCCTCTGGCCAGCACG
CACAGCCGCTCTTCCTCGTCCTCCTCGGCCTCATCCACCTCTTCGAGTCG
CTCTCGGAAAGCAAGCAAAAGCCAACCGCTCGCCAAACGCTACCGGCACG
GGAGCAGTGAGATGGTCGGCTACGTCGGGCCGGAAGGAAATGATTACGAC
AACCTGCAGGCGTACCAAGAGAAAGCAGGAAGGAACCAAGCAGAGTTCGA
GAGAATAGATGTCGGGGGCTCCACACGGTGCCGGATGGAGGGGAAAGCAG
GGGAAGAATTGGAGGATGAGGATGCGGTTGTGGTTATGTTGGCACCCACT
GGGCAGCATGAACGGCAAAGTTCGCTTTTCGATTTGGTGACGGCCGTCGA
AGAAGCCTCCGGGAAAACCGATGGTAACCCCGTCGCAAAAAGTCGGGCCA
TTAGCCCTGCTCTGGATGATCACGGGCTCCTCCTACTCGGCCTGAAGGCA
CACCCCGTCACATTCTCACACGCCAAAACTTCTCCATCCACGACGGCGGG
CACAAATTCCGCGAAATCTTTGCTGGAGACGCAGTCCAAGCAAGAAGCGA
CGCCCAGCGAACGCACCAGCTGCAACAACAGCGTCGGCAGCTCGGGGGAA
ACCAGCTTGACCAAAGTGCCCCCATCCTCCTCCTCGTTGCAATCCGCCCT
GGGCGGGAAAGCTTTGGAAGGTCGCGTCTCCGCATCTTTCCATACACAGC
CAGCCAAGACAAGCAGTATCTACCCGGGCCACCCCCTACCCCCGCAGCTG
GCCAACATGCCTCCTCGCCTGCCCTACCCCCCTGTGACTTTTCAAGGGCA
TGCCTCCCATCCTCAATACTACCATCCGCACCACTACTTCCACAACTTGA
GTACCCCTTATAATCAGCAGCCTCAGCAGTCTGTAGCCTACTATAATCAG
TACCCTCCCCAGAAGCATGAGCGTAAAACCTCAGAAGAACAGCCCGCCTA
CTGCCCACAACCGCATCAGCAGAACAGCAGCAGTCAAGCAGACTTGCTGC
ATGCGTCCTACTCCTCCACCATGAGCACGCATTCTTTGCCGGCCATGTCA
GGGCACGCAGTTGTCGACGTGGTCGGCCCTGCGGACACCCCTACGGCCCT
CTCTGGTACGAAAATAGGCACGTGCAAGACCGTCGGCAGCAACAGGGGGC
AAGGGCAGGAACACCACTCGCGAAGAGAGGGTACAGACCGCACGGCCCAA
CACATTGTAGGCAGCATGGTGCGCGACATGAGCGGAGCTGCCCCTGCTGC
GACTGTCTCTTACTAATCGTCAAACCTGAGGATGCTGCCGCATTCTACTG
TCACCTGCTTTACCATAAAATCCCGCAAGTTCAAGAAGAGAAACGGAGGA
AGGATGTTAACAGGATGTAGGGTATTTTTTAGAAACTTTGGGGATGTCAT
CTTTGACATGCTGTCGACCTGTCAGATCACGCACTCACGCACATCTACTC
ATAGCAAATTTGACGAAGTACGTACGTCTGAATAGAGATTCAAAGGTACA
TGCTACCAAACCCGTCGCAATTTTTACGCGCGTGCTTATCTATTCATGAA
TATATCTATAAAAATATATACATGTATATCCATTTATAGAGAGGTAGATG
TGTGTCCCAGTATGTGTACATACATGTTTCGACATGTTTGTACACATTCT
CTCTTATATCTTATACGGTGCTTGCGGCTATGTCCGTGCGCGTTGTCGCC
CGGTATTGATCGGTCTTCTCTATCTGTGACAAGATTTTCCTATTGTTATT
TTTGTCGGATGTGTCCGTCAAAAGAAATGATAAAGGTGTCGAAAGGACTG
ATGGGACCTTTTTTTGGATTGTCTTTCTCTGACCAGTGAGGGATCTAGGC
GTTGCGGACGCGCAGTCAATTGATGCAAACAACATAAACAAAAGTCATGG
ATGCATTTCACAGATATCATTGAATAATTAATGCTGAGGAAAAAGAAATT
GAGACCCGAAATCTTGGTCTGTGCATAACAAAAGTAAAATTGTCTTAGTG
CACTGACAAAGGTTGGCGGGCATGTTGTCCGACCAAAGCGAAGAGTTAAT
GCTATTGAATACAACCATATAGGAAGAGGGGAAAAGCCAGGTTTAAACAA
AGAGGAAAAAGTCCTTGCAACCTCAGC

Coding sequence (CDS) from alignment at CM002456.1:1353998..1356674-

>rna1159 ID=rna1159|Name=rna1159|organism=Nannochloropsis gaditana|type=CDS|length=1776bp|location=Sequence derived from alignment at CM002456.1:1353998..1356674- (Nannochloropsis gaditana)
ATGACTGCTTCAGAAGAACTTTCTCTCCGATACTATGAAGTGTGTTGCAT
GCTTCTCCAACGATGGCGGTACTCCACTCAAAACAACCGGGAGGATATGA
ATGATGCCTGTATCGAGAGCGGTGCATCCTACGACGAATTGCGCTCCATT
CTCAAGCACCTCCGTGCCAAGTACATGGCTGGTTTCAACAATGCCCAGAA
GCAAGGTCGATTTATCGACGATTTCTACGGCTACTACACTTCTACCAAGC
GGCCTCGGGGACGGCCTCCGACCGCAGCGGGTGGGACTGGAAACGGGGTG
AAACTGCCGTCGAGCAACATCCGTGCCCAGCAACCGTCGCAGCCTGCCTC
CTCAGACATGGTCACTGGAGCCGGAGATTTGATGGTCGAGAGCGACAGCC
AAAGCAGCAATGACGGAAATGCTCCTGTGGGTGGCACAGGGCGTTTGAGG
ATGCCTTCAGCCCGGGCCCGCAAAGCCACAGCACCCTATGAGGCCCCTCT
GGCCAGCACGCACAGCCGCTCTTCCTCGTCCTCCTCGGCCTCATCCACCT
CTTCGAGTCGCTCTCGGAAAGCAAGCAAAAGCCAACCGCTCGCCAAACGC
TACCGGCACGGGAGCAGTGAGATGGTCGGCTACGTCGGGCCGGAAGGAAA
TGATTACGACAACCTGCAGGCGTACCAAGAGAAAGCAGGAAGGAACCAAG
CAGAGTTCGAGAGAATAGATGTCGGGGGCTCCACACGGTGCCGGATGGAG
GGGAAAGCAGGGGAAGAATTGGAGGATGAGGATGCGGTTGTGGTTATGTT
GGCACCCACTGGGCAGCATGAACGGCAAAGTTCGCTTTTCGATTTGGTGA
CGGCCGTCGAAGAAGCCTCCGGGAAAACCGATGGTAACCCCGTCGCAAAA
AGTCGGGCCATTAGCCCTGCTCTGGATGATCACGGGCTCCTCCTACTCGG
CCTGAAGGCACACCCCGTCACATTCTCACACGCCAAAACTTCTCCATCCA
CGACGGCGGGCACAAATTCCGCGAAATCTTTGCTGGAGACGCAGTCCAAG
CAAGAAGCGACGCCCAGCGAACGCACCAGCTGCAACAACAGCGTCGGCAG
CTCGGGGGAAACCAGCTTGACCAAAGTGCCCCCATCCTCCTCCTCGTTGC
AATCCGCCCTGGGCGGGAAAGCTTTGGAAGGTCGCGTCTCCGCATCTTTC
CATACACAGCCAGCCAAGACAAGCAGTATCTACCCGGGCCACCCCCTACC
CCCGCAGCTGGCCAACATGCCTCCTCGCCTGCCCTACCCCCCTGTGACTT
TTCAAGGGCATGCCTCCCATCCTCAATACTACCATCCGCACCACTACTTC
CACAACTTGAGTACCCCTTATAATCAGCAGCCTCAGCAGTCTGTAGCCTA
CTATAATCAGTACCCTCCCCAGAAGCATGAGCGTAAAACCTCAGAAGAAC
AGCCCGCCTACTGCCCACAACCGCATCAGCAGAACAGCAGCAGTCAAGCA
GACTTGCTGCATGCGTCCTACTCCTCCACCATGAGCACGCATTCTTTGCC
GGCCATGTCAGGGCACGCAGTTGTCGACGTGGTCGGCCCTGCGGACACCC
CTACGGCCCTCTCTGGTACGAAAATAGGCACGTGCAAGACCGTCGGCAGC
AACAGGGGGCAAGGGCAGGAACACCACTCGCGAAGAGAGGGTACAGACCG
CACGGCCCAACACATTGTAGGCAGCATGGTGCGCGACATGAGCGGAGCTG
CCCCTGCTGCGACTGTCTCTTACTAA

Synonyms

Publications