EWM29567.1, cds1155 (CDS) Nannochloropsis gaditana

Overview
NameEWM29567.1
Unique Namecds1155
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1342800..1344819 -
Alignment locationCM002456.1:1335241..1342635 -
Alignment locationCM002456.1:1334900..1335046 -
Alignment locationCM002456.1:1334765..1334853 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29567.1
Productpstvd rna-biding virp1
Orig transcript idgnl|cribi|Naga_100006g12.8656.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1342800..1344819 -
CM002456.1supercontigCM002456.1:1335241..1342635 -
CM002456.1supercontigCM002456.1:1334900..1335046 -
CM002456.1supercontigCM002456.1:1334765..1334853 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR003888FYrich_N
IPR019787Znf_PHD-finger
IPR013083Znf_RING/FYVE/PHD
IPR001487Bromodomain
IPR001965Znf_PHD
Homology
BLAST of EWM29567.1 vs. NCBI_GenBank
Match: gi|585112138|gb|EWM29567.1| (pstvd rna-biding virp1 [Nannochloropsis gaditana])

HSP 1 Score: 6494.45 bits (16848), Expect = 0.000e+0
Identity = 3216/3216 (100.00%), Postives = 3216/3216 (100.00%), Query Frame = 0
Query:    1 MENVGNMSGGSPSGYPPMALGQQQRLNNQQHEPSPQQLYLPPQQQQEQHFAAYQMDPPAYGQHTYGYMTGAGVGHSAPSPPVYHAQPPAYPGPYPSHPYGNRTGTMHDGNVSGNSAHAHYPTPYHHGREHGEGGGGKGEEGSLSLSAAAMQQFYLQQQQAAAAAAGIGPQSSGVDAVAWYALAQAHHQHLQQQQQQQQHRDHNHQALPVQQHHHHHHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHPQHHQAFASHLTGDGRKRGGEGADVQAQLPELQFQAEVSGKSHVSQEPNRKKVRERSAPSKRKAAGEKGGRGGGRKGGRPPSPSAYFPPLMPGTAVLPVDKESEAALLAELRAEVERLASQRGEGGGEGYEGEEEEEGNREPGDGPNDPTKKNGHANSVDVVAKALIDWRVEQVYPAAEGAAGVLEGGEGGREGEGAGQVIYVDVHGQVFASKAAAVEALLSRVVQEEEHRKMKARKRGEMRRKQEATPGRDGSMSLSAGPEPSPAKVPGVQSPSSPATSALPLSSTAKAVKGPASRPSLPPLPSMNPSVLETLGGTLPPLPAHSNTSSTSSITGEAGAYRPTPLEADAADGNKGEELRGGGGREDDEGEEGSRGERGMVDSTCLSPASLALARSKVYDEARTFLSCAVLKMPVQLGPVRILSFGKIDFIRPKYHCETEIWPLGFKAARVEMSHVLRQLLVLFFEITEGGDKGPNFKVILELSKPLSGGGGGGGGGEGGSDGGGGGGGRFVFHARNARKAWGDALDKLCLLEKHELARRRARKKRRLAVCEDKVKEEEREDDGRKALVACDPEEEEARRALGKLYREKVLLEKEVLKERCELLAQLEADARTEAYTWLSQSTSTALALPVPPLRLRTGAKRGKPENGQTEGEGGVEDGREDASVRPWVDYRSFFTDSIRRLIEGLPGADKCKLYEFVDLRRPAFGQGGHREGKGGLGGGRDPLSDLVPASEGVKALAAASFGLESSAGVVNETIVLARAKAAAAAWAAAGEEERGGKLLKGGGVNWGGRGKVKMEGEGGDGAVRSAEEDATLKAAREMEREELIRLRCEEVRQREEERRQNKLMEKEEKKRSKEEQRWEKRMRQVERKRRKERIKELERELKRLRIRMDNDIQRRRAAARQLVQVGADAPAGMVAVPQLAHESLIDDAHLEETEKALPLPPSSTPSSNSRFSSANNLLSSRTMADVLQVWDVGYTLAGKMGMSEWPSLSLFLKALDAAEACKDRHPTPREERRMRVLSEVAQRLTGVLLPDIVQTLMYSSPSQGGSGAGSGAGIDPDPTLPLNEMTWPELARWAFMAQAYRVMQLPVDLAYALRGRGVDFQMDAWDKKALTMGRLRVLMRHRGTGGGRGGGGGLPVWSRTAFTLCIPTPNPLRCLLSGWQVALESLRCLPGQGTKDEGRWGPWVDEHVGRALSAVERREGEVGVGVLTAVQEASRILAPFREEGENQNKKGWLEAIKQAVEKAMTALDMYQSNLGEGGIWKELETDPIAGSMQRGGEQRPPQAPQQEEEEEEEAEKDLQEHWQSPSSVEGAGGKIRVGDSRSGVGGGAGEGEIKQDGEELQKVSGTPAIPSSLNRAMTSESIASMSAPSVTSTTGDGLPQLASSTVPSLPASPSLGGTEGGGNNGVSLACSTASFETDSLDSESRRSSAEKEGGSRGGKKEKRKRRRSSLGLGAEREECETVEGKEEEDGMGILTKGGEEEEEEDEEDEEEEEEEEDEEDIDAYRDITPEDFEAKAEIIRRCYAILQALMQAKGGSLFKYQPHVEGYGEVVARPLGLMDVTRNLRNGQYDDSVGRFAADVRRVFINCALFNPENDVILHDADRLVARFDRLLLQWVLDVDAPPLEELGLDTTCKVCRDPYPQSVEVTLVGGIKEWRQVSPQQCNRCDASFHPDCVKMPVLHPNRNVSEQGKEKEYWFCEDCIRERMPKDVDPFLRLRVVKHFPGVGAFAGRVASVRYTREKAVYTLLFRNPSPSSSSSAPSFFEHKLDRNALCSLLRAQGLPQQNPELAQLLLQRPAAIDAKCEYEALGHCRWGLGYLLEGESRFPRKLDPELSLVVRRWINGGDVELVELLKGIRALDAGVGGRRRRKGGRKGAREWVACLVALAGQAGGTVRVRDYLEGQEEDLRERLGEVLVEGVQKGPKEEGREEGEEKEGNVKEDEVVGVENAEKDAKKTEEEELVGDEDEEELGVLRGVPPIFLPGAGGTARVVQEEEDFSDDEAYAQRQQELLEGKETEKGEGEETESEGEGEEWEMEGGAEEDEEEEVVRRGRGRSRKSVGKEETPVDVGSLTSSPPSALPTSTVTATPTIGEKEEEKETGPGAGGRKRQPLKGKGEKEAVRPREPGILMGLPLFTKGGGDLLLVGKQPLRAREYLCFEEGVKEETRRALGKEGLKLLERLSKEGQWEGKEGGKEEGGEEGEEGEEEEEEEEGGEEEEKEGGEDERGGGTVCALCGETEEYLCNIMVHGPSAEDYYALPEEVREALEKRMVTEQQEKSADRYVFWQPVDENLALETERVLKEVFTSAPLAGSEGREKVKGPDGKREVPTLRKGSLITHECCADALVEAKAEAGARERRLRRKVGVESVAFMGRGRTAALGQDRGGRIYWQFAGEPSFLFVQPYDRQGQSEEGIAGSTDAMALIRQKHDEALAHSVDTGVLALGEGGREGSVEKWLVYESAEAIGKVVEEYLNPRGKKERALREAILRQYPDVRKFLRNKRSEEDDGETDNLGTGADENEVGQEETEKETAGATQALWGVGDAVFVEKHGVLWKAHVIFVNPDQGVVRVSYDGWAQADEWIPYVPGPSSLPSPSSTPDMERDAPPSLLPWTALRAEEHEEQWGKRQEIARARYVSPVPFVEKLRAFPYVTASNRNRQRSKAKLLPTRLRYEFRRKALNFSESEERMAGMEDVEEEEESLIEVKAAILTVEAALPLGCILDAPDEARKSIKLRRDEFNKWVRRVEMAATARELMECLILLEHSIDSRWRLNPFRSTYLLCMSSWAHALKYATPASLALRVWSLDRLLDYGRVELDTDGDSRRLSKGKSQPPGFIKPGTVGGGYVDIGVVPDFLPYVPEARAFAGGSGREGEDNGEEEGEWEDGGEGGVPPGTGRVGERGEVQGGKARKSHGKVVNGGETSRSLDGSADASNCRSRIRTVVQIWHERDNFNSFKRRRVYQRKHAQKREARRH 3216
            MENVGNMSGGSPSGYPPMALGQQQRLNNQQHEPSPQQLYLPPQQQQEQHFAAYQMDPPAYGQHTYGYMTGAGVGHSAPSPPVYHAQPPAYPGPYPSHPYGNRTGTMHDGNVSGNSAHAHYPTPYHHGREHGEGGGGKGEEGSLSLSAAAMQQFYLQQQQAAAAAAGIGPQSSGVDAVAWYALAQAHHQHLQQQQQQQQHRDHNHQALPVQQHHHHHHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHPQHHQAFASHLTGDGRKRGGEGADVQAQLPELQFQAEVSGKSHVSQEPNRKKVRERSAPSKRKAAGEKGGRGGGRKGGRPPSPSAYFPPLMPGTAVLPVDKESEAALLAELRAEVERLASQRGEGGGEGYEGEEEEEGNREPGDGPNDPTKKNGHANSVDVVAKALIDWRVEQVYPAAEGAAGVLEGGEGGREGEGAGQVIYVDVHGQVFASKAAAVEALLSRVVQEEEHRKMKARKRGEMRRKQEATPGRDGSMSLSAGPEPSPAKVPGVQSPSSPATSALPLSSTAKAVKGPASRPSLPPLPSMNPSVLETLGGTLPPLPAHSNTSSTSSITGEAGAYRPTPLEADAADGNKGEELRGGGGREDDEGEEGSRGERGMVDSTCLSPASLALARSKVYDEARTFLSCAVLKMPVQLGPVRILSFGKIDFIRPKYHCETEIWPLGFKAARVEMSHVLRQLLVLFFEITEGGDKGPNFKVILELSKPLSGGGGGGGGGEGGSDGGGGGGGRFVFHARNARKAWGDALDKLCLLEKHELARRRARKKRRLAVCEDKVKEEEREDDGRKALVACDPEEEEARRALGKLYREKVLLEKEVLKERCELLAQLEADARTEAYTWLSQSTSTALALPVPPLRLRTGAKRGKPENGQTEGEGGVEDGREDASVRPWVDYRSFFTDSIRRLIEGLPGADKCKLYEFVDLRRPAFGQGGHREGKGGLGGGRDPLSDLVPASEGVKALAAASFGLESSAGVVNETIVLARAKAAAAAWAAAGEEERGGKLLKGGGVNWGGRGKVKMEGEGGDGAVRSAEEDATLKAAREMEREELIRLRCEEVRQREEERRQNKLMEKEEKKRSKEEQRWEKRMRQVERKRRKERIKELERELKRLRIRMDNDIQRRRAAARQLVQVGADAPAGMVAVPQLAHESLIDDAHLEETEKALPLPPSSTPSSNSRFSSANNLLSSRTMADVLQVWDVGYTLAGKMGMSEWPSLSLFLKALDAAEACKDRHPTPREERRMRVLSEVAQRLTGVLLPDIVQTLMYSSPSQGGSGAGSGAGIDPDPTLPLNEMTWPELARWAFMAQAYRVMQLPVDLAYALRGRGVDFQMDAWDKKALTMGRLRVLMRHRGTGGGRGGGGGLPVWSRTAFTLCIPTPNPLRCLLSGWQVALESLRCLPGQGTKDEGRWGPWVDEHVGRALSAVERREGEVGVGVLTAVQEASRILAPFREEGENQNKKGWLEAIKQAVEKAMTALDMYQSNLGEGGIWKELETDPIAGSMQRGGEQRPPQAPQQEEEEEEEAEKDLQEHWQSPSSVEGAGGKIRVGDSRSGVGGGAGEGEIKQDGEELQKVSGTPAIPSSLNRAMTSESIASMSAPSVTSTTGDGLPQLASSTVPSLPASPSLGGTEGGGNNGVSLACSTASFETDSLDSESRRSSAEKEGGSRGGKKEKRKRRRSSLGLGAEREECETVEGKEEEDGMGILTKGGEEEEEEDEEDEEEEEEEEDEEDIDAYRDITPEDFEAKAEIIRRCYAILQALMQAKGGSLFKYQPHVEGYGEVVARPLGLMDVTRNLRNGQYDDSVGRFAADVRRVFINCALFNPENDVILHDADRLVARFDRLLLQWVLDVDAPPLEELGLDTTCKVCRDPYPQSVEVTLVGGIKEWRQVSPQQCNRCDASFHPDCVKMPVLHPNRNVSEQGKEKEYWFCEDCIRERMPKDVDPFLRLRVVKHFPGVGAFAGRVASVRYTREKAVYTLLFRNPSPSSSSSAPSFFEHKLDRNALCSLLRAQGLPQQNPELAQLLLQRPAAIDAKCEYEALGHCRWGLGYLLEGESRFPRKLDPELSLVVRRWINGGDVELVELLKGIRALDAGVGGRRRRKGGRKGAREWVACLVALAGQAGGTVRVRDYLEGQEEDLRERLGEVLVEGVQKGPKEEGREEGEEKEGNVKEDEVVGVENAEKDAKKTEEEELVGDEDEEELGVLRGVPPIFLPGAGGTARVVQEEEDFSDDEAYAQRQQELLEGKETEKGEGEETESEGEGEEWEMEGGAEEDEEEEVVRRGRGRSRKSVGKEETPVDVGSLTSSPPSALPTSTVTATPTIGEKEEEKETGPGAGGRKRQPLKGKGEKEAVRPREPGILMGLPLFTKGGGDLLLVGKQPLRAREYLCFEEGVKEETRRALGKEGLKLLERLSKEGQWEGKEGGKEEGGEEGEEGEEEEEEEEGGEEEEKEGGEDERGGGTVCALCGETEEYLCNIMVHGPSAEDYYALPEEVREALEKRMVTEQQEKSADRYVFWQPVDENLALETERVLKEVFTSAPLAGSEGREKVKGPDGKREVPTLRKGSLITHECCADALVEAKAEAGARERRLRRKVGVESVAFMGRGRTAALGQDRGGRIYWQFAGEPSFLFVQPYDRQGQSEEGIAGSTDAMALIRQKHDEALAHSVDTGVLALGEGGREGSVEKWLVYESAEAIGKVVEEYLNPRGKKERALREAILRQYPDVRKFLRNKRSEEDDGETDNLGTGADENEVGQEETEKETAGATQALWGVGDAVFVEKHGVLWKAHVIFVNPDQGVVRVSYDGWAQADEWIPYVPGPSSLPSPSSTPDMERDAPPSLLPWTALRAEEHEEQWGKRQEIARARYVSPVPFVEKLRAFPYVTASNRNRQRSKAKLLPTRLRYEFRRKALNFSESEERMAGMEDVEEEEESLIEVKAAILTVEAALPLGCILDAPDEARKSIKLRRDEFNKWVRRVEMAATARELMECLILLEHSIDSRWRLNPFRSTYLLCMSSWAHALKYATPASLALRVWSLDRLLDYGRVELDTDGDSRRLSKGKSQPPGFIKPGTVGGGYVDIGVVPDFLPYVPEARAFAGGSGREGEDNGEEEGEWEDGGEGGVPPGTGRVGERGEVQGGKARKSHGKVVNGGETSRSLDGSADASNCRSRIRTVVQIWHERDNFNSFKRRRVYQRKHAQKREARRH
Sbjct:    1 MENVGNMSGGSPSGYPPMALGQQQRLNNQQHEPSPQQLYLPPQQQQEQHFAAYQMDPPAYGQHTYGYMTGAGVGHSAPSPPVYHAQPPAYPGPYPSHPYGNRTGTMHDGNVSGNSAHAHYPTPYHHGREHGEGGGGKGEEGSLSLSAAAMQQFYLQQQQAAAAAAGIGPQSSGVDAVAWYALAQAHHQHLQQQQQQQQHRDHNHQALPVQQHHHHHHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHPQHHQAFASHLTGDGRKRGGEGADVQAQLPELQFQAEVSGKSHVSQEPNRKKVRERSAPSKRKAAGEKGGRGGGRKGGRPPSPSAYFPPLMPGTAVLPVDKESEAALLAELRAEVERLASQRGEGGGEGYEGEEEEEGNREPGDGPNDPTKKNGHANSVDVVAKALIDWRVEQVYPAAEGAAGVLEGGEGGREGEGAGQVIYVDVHGQVFASKAAAVEALLSRVVQEEEHRKMKARKRGEMRRKQEATPGRDGSMSLSAGPEPSPAKVPGVQSPSSPATSALPLSSTAKAVKGPASRPSLPPLPSMNPSVLETLGGTLPPLPAHSNTSSTSSITGEAGAYRPTPLEADAADGNKGEELRGGGGREDDEGEEGSRGERGMVDSTCLSPASLALARSKVYDEARTFLSCAVLKMPVQLGPVRILSFGKIDFIRPKYHCETEIWPLGFKAARVEMSHVLRQLLVLFFEITEGGDKGPNFKVILELSKPLSGGGGGGGGGEGGSDGGGGGGGRFVFHARNARKAWGDALDKLCLLEKHELARRRARKKRRLAVCEDKVKEEEREDDGRKALVACDPEEEEARRALGKLYREKVLLEKEVLKERCELLAQLEADARTEAYTWLSQSTSTALALPVPPLRLRTGAKRGKPENGQTEGEGGVEDGREDASVRPWVDYRSFFTDSIRRLIEGLPGADKCKLYEFVDLRRPAFGQGGHREGKGGLGGGRDPLSDLVPASEGVKALAAASFGLESSAGVVNETIVLARAKAAAAAWAAAGEEERGGKLLKGGGVNWGGRGKVKMEGEGGDGAVRSAEEDATLKAAREMEREELIRLRCEEVRQREEERRQNKLMEKEEKKRSKEEQRWEKRMRQVERKRRKERIKELERELKRLRIRMDNDIQRRRAAARQLVQVGADAPAGMVAVPQLAHESLIDDAHLEETEKALPLPPSSTPSSNSRFSSANNLLSSRTMADVLQVWDVGYTLAGKMGMSEWPSLSLFLKALDAAEACKDRHPTPREERRMRVLSEVAQRLTGVLLPDIVQTLMYSSPSQGGSGAGSGAGIDPDPTLPLNEMTWPELARWAFMAQAYRVMQLPVDLAYALRGRGVDFQMDAWDKKALTMGRLRVLMRHRGTGGGRGGGGGLPVWSRTAFTLCIPTPNPLRCLLSGWQVALESLRCLPGQGTKDEGRWGPWVDEHVGRALSAVERREGEVGVGVLTAVQEASRILAPFREEGENQNKKGWLEAIKQAVEKAMTALDMYQSNLGEGGIWKELETDPIAGSMQRGGEQRPPQAPQQEEEEEEEAEKDLQEHWQSPSSVEGAGGKIRVGDSRSGVGGGAGEGEIKQDGEELQKVSGTPAIPSSLNRAMTSESIASMSAPSVTSTTGDGLPQLASSTVPSLPASPSLGGTEGGGNNGVSLACSTASFETDSLDSESRRSSAEKEGGSRGGKKEKRKRRRSSLGLGAEREECETVEGKEEEDGMGILTKGGEEEEEEDEEDEEEEEEEEDEEDIDAYRDITPEDFEAKAEIIRRCYAILQALMQAKGGSLFKYQPHVEGYGEVVARPLGLMDVTRNLRNGQYDDSVGRFAADVRRVFINCALFNPENDVILHDADRLVARFDRLLLQWVLDVDAPPLEELGLDTTCKVCRDPYPQSVEVTLVGGIKEWRQVSPQQCNRCDASFHPDCVKMPVLHPNRNVSEQGKEKEYWFCEDCIRERMPKDVDPFLRLRVVKHFPGVGAFAGRVASVRYTREKAVYTLLFRNPSPSSSSSAPSFFEHKLDRNALCSLLRAQGLPQQNPELAQLLLQRPAAIDAKCEYEALGHCRWGLGYLLEGESRFPRKLDPELSLVVRRWINGGDVELVELLKGIRALDAGVGGRRRRKGGRKGAREWVACLVALAGQAGGTVRVRDYLEGQEEDLRERLGEVLVEGVQKGPKEEGREEGEEKEGNVKEDEVVGVENAEKDAKKTEEEELVGDEDEEELGVLRGVPPIFLPGAGGTARVVQEEEDFSDDEAYAQRQQELLEGKETEKGEGEETESEGEGEEWEMEGGAEEDEEEEVVRRGRGRSRKSVGKEETPVDVGSLTSSPPSALPTSTVTATPTIGEKEEEKETGPGAGGRKRQPLKGKGEKEAVRPREPGILMGLPLFTKGGGDLLLVGKQPLRAREYLCFEEGVKEETRRALGKEGLKLLERLSKEGQWEGKEGGKEEGGEEGEEGEEEEEEEEGGEEEEKEGGEDERGGGTVCALCGETEEYLCNIMVHGPSAEDYYALPEEVREALEKRMVTEQQEKSADRYVFWQPVDENLALETERVLKEVFTSAPLAGSEGREKVKGPDGKREVPTLRKGSLITHECCADALVEAKAEAGARERRLRRKVGVESVAFMGRGRTAALGQDRGGRIYWQFAGEPSFLFVQPYDRQGQSEEGIAGSTDAMALIRQKHDEALAHSVDTGVLALGEGGREGSVEKWLVYESAEAIGKVVEEYLNPRGKKERALREAILRQYPDVRKFLRNKRSEEDDGETDNLGTGADENEVGQEETEKETAGATQALWGVGDAVFVEKHGVLWKAHVIFVNPDQGVVRVSYDGWAQADEWIPYVPGPSSLPSPSSTPDMERDAPPSLLPWTALRAEEHEEQWGKRQEIARARYVSPVPFVEKLRAFPYVTASNRNRQRSKAKLLPTRLRYEFRRKALNFSESEERMAGMEDVEEEEESLIEVKAAILTVEAALPLGCILDAPDEARKSIKLRRDEFNKWVRRVEMAATARELMECLILLEHSIDSRWRLNPFRSTYLLCMSSWAHALKYATPASLALRVWSLDRLLDYGRVELDTDGDSRRLSKGKSQPPGFIKPGTVGGGYVDIGVVPDFLPYVPEARAFAGGSGREGEDNGEEEGEWEDGGEGGVPPGTGRVGERGEVQGGKARKSHGKVVNGGETSRSLDGSADASNCRSRIRTVVQIWHERDNFNSFKRRRVYQRKHAQKREARRH 3216          
BLAST of EWM29567.1 vs. NCBI_GenBank
Match: gi|553188038|ref|XP_005854723.1| (dna binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294336|gb|EKU21636.1| dna binding protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 2610.48 bits (6765), Expect = 0.000e+0
Identity = 1298/1345 (96.51%), Postives = 1299/1345 (96.58%), Query Frame = 0
Query:    7 MSGGSPSGYPPMALGQQQRLNNQQHEPSPQQLYLPPQQQQEQHFAAYQMDPPAYGQHTYGYMTGAGVGHSAPSPPVYHAQPPAYPGPYPSHPYGNRTGTMHDGNVSGNSAHAHYPTPYHHGREHGEGGGGKGEEGSLSLSAAAMQQFYLQQQQAAAAAAGIGPQSSGVDAVAWYALAQAHHQHLQQQQQQQQ-HRDHNHQALPVQQHHHHHHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHPQHHQAFASHLTGDGRKRGGEGADVQAQLPELQFQAEVSGKSHVSQEPNRKKVRERSAPSKRKAAGEKGGRGGGRKGGRPPSPSAYFPPLMPGTAVLPVDKESEAALLAELRAEVERLASQRGEGGGEGYEGEEEEEGNREPGDGPNDPTKKNGHANSVDVVAKALIDWRVEQVYPAAEGAAGVLEGGEGGREGEGAGQVIYVDVHGQVFASKAAAVEALLSRVVQEEEHRKMKARKRGEMRRKQEATPGRDGSMSLSAGPEPSPAKVPGVQSPSSPATSALPLSSTAKAVKGPASRPSLPPLPSMNPSVLETLGGTLPPLPAHSNTSSTSSITGEAGAYRPTPLEADAADGNKGEELRGGGGREDDEGEEGSRGERGMVDSTCLSPASLALARSKVYDEARTFLSCAVLKMPVQLGPVRILSFGKIDFIRPKYHCETEIWPLGFKAARVEMSHVLRQLLVLFFEITEGGDKGPNFKVILELSKPLSGGGGGGGGGEGGSDGGGGGGGRFVFHARNARKAWGDALDKLCLLEKHELARRRARKKRRLAVCEDKVKEEEREDDGRKALVACDPEEEEARRALGKLYREKVLLEKEVLKERCELLAQLEADARTEAYTWLSQSTSTALALPVPPLRLRTGAKRGKPENGQTEGEGGVEDGREDASVRPWVDYRSFFTDSIRRLIEGLPGADKCKLYEFVDLRRPAFGQGGHREGKGGLGGGRDPLSDLVPASEGVKALAAASFGLESSAGVVNETIVLARAKAAAAAWAAAGEEERGGKLLKGGGVNWGGRGKVKMEGEGGDGAVRSAEEDATLKAAREMEREELIRLRCEEVRQREEERRQNKLMEKEEKKRSKEEQRWEKRMRQVERKRRKERIKELERELKRLRIRMDNDIQRRRAAARQLVQVGADAPAGMVAVPQLAHESLIDDAHLEETEKALPLPPSSTPSSNSRFSSANNLLSSRTMADVLQVWDVGYTLAGKMGMSEWPSLSLFLKALDAAEACKDRHPTPREERRMRVLSEVAQRLTGVLLPDIVQTLMYSSPSQGGSGAGSGAGIDPDPTLPLNEMTWPELARWAFMAQAYRVMQLPVDLAYALRGRGVDFQ 1350
            MSGGSPSGYPPMALGQQQRLNNQQHEPSPQQLYLPPQQQQEQHFAAYQMDPPAYGQHTYGYMTGAGVGHSAPSPPVYHAQPPAYPGPYPSHPYGNRTGTMHDGNVSGNSAHAHYPTPYHHGREHGEGGGGKGEEGSLSLSAAAMQQFYLQQQQAAAAAAGIGPQSSGVDAVAWYALAQAHHQHLQQQQQQQQ HRDHNHQALPVQQHHHHHHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHPQHHQAFASHLTGDGRKRGGEGADVQAQLPELQFQAEVSGKSHVSQEPNRKKVRERSAPSKRKAAGEKGGRGGGRKGGRPPSPSAYFPPLMPGTAVLPVDKESEAALLAELRAEVERLASQRGEGGGEGYEGEEEEEGNREPGDGPNDPTKKNGHANSVDVVAKALIDWRVEQVYPAAEGA GVLEGGEGGREGEGAGQVIYVDVHGQVFASKAAAVEALLSRVVQEEEHRKMKARKRGEMRRKQEATPGRDGSMSLSAGPEPSPAKVPGVQSPSSPATSALPLSSTAKAVKGPASRPSLPPLPSMNPSVLETLGGTLPPLPAHSNTSSTSSITGEAGAYRPTPLEADAADGNKGEELRGGGGREDDEGEEGSRGERGMVDSTCLSPASLALARSKVYDEARTFLSCAVLKMPVQLGPVRILSFGKIDFIRPKYHCETEIWPLGFKAARVEMSHVLRQLLVLFFEITEGGDKGPNFKVILELSKPLSGGGGGGGGGEGGSDGGGGGGGRFVFHARNARKAWGDALDKLCLLEKHELARRRARKKRRLAVCEDKVKEEEREDDGRKALVACDPEEEEARRALGKLYREKVLLEKEVLKERCELLAQLEADARTEAYTWLSQSTSTALALPVPPLRLRTGAKRGKPENGQTEGEGGVEDGREDASVRPWVDYRSFFTDSIRRLIEGLPGADKCKLYEFVDLRRPAFGQGGHREGKGGLGGGRDPLSDLVPASEGVKALAAASFGLESSAGVVNET+VLARAKAAAAAWAAA                                            AAREMEREELIRLRCEEVRQREEERRQNKLMEKEEKKRSKEEQRWEKRMRQVERKRRKERIKELERELKRLRIRMDNDIQRRRAAARQLVQVGADAPAGMVAVPQLAHESLIDDAHLEETEKALPLPPSSTPSSNSRFSSANNLLSSRTMADVLQVWDVGYTLAGKMGMSEWPSLSLFLKALDAAEACKDRHPTPREERRMRVLSEVAQRLTGVLLPDIVQTLMYSSPSQGGSGAGSGAGIDPDPTLPLNEMTWPELARWAFMAQAYRVMQLPVDLAYALRGRGVDFQ
Sbjct:    1 MSGGSPSGYPPMALGQQQRLNNQQHEPSPQQLYLPPQQQQEQHFAAYQMDPPAYGQHTYGYMTGAGVGHSAPSPPVYHAQPPAYPGPYPSHPYGNRTGTMHDGNVSGNSAHAHYPTPYHHGREHGEGGGGKGEEGSLSLSAAAMQQFYLQQQQAAAAAAGIGPQSSGVDAVAWYALAQAHHQHLQQQQQQQQQHRDHNHQALPVQQHHHHHHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHPQHHQAFASHLTGDGRKRGGEGADVQAQLPELQFQAEVSGKSHVSQEPNRKKVRERSAPSKRKAAGEKGGRGGGRKGGRPPSPSAYFPPLMPGTAVLPVDKESEAALLAELRAEVERLASQRGEGGGEGYEGEEEEEGNREPGDGPNDPTKKNGHANSVDVVAKALIDWRVEQVYPAAEGAEGVLEGGEGGREGEGAGQVIYVDVHGQVFASKAAAVEALLSRVVQEEEHRKMKARKRGEMRRKQEATPGRDGSMSLSAGPEPSPAKVPGVQSPSSPATSALPLSSTAKAVKGPASRPSLPPLPSMNPSVLETLGGTLPPLPAHSNTSSTSSITGEAGAYRPTPLEADAADGNKGEELRGGGGREDDEGEEGSRGERGMVDSTCLSPASLALARSKVYDEARTFLSCAVLKMPVQLGPVRILSFGKIDFIRPKYHCETEIWPLGFKAARVEMSHVLRQLLVLFFEITEGGDKGPNFKVILELSKPLSGGGGGGGGGEGGSDGGGGGGGRFVFHARNARKAWGDALDKLCLLEKHELARRRARKKRRLAVCEDKVKEEEREDDGRKALVACDPEEEEARRALGKLYREKVLLEKEVLKERCELLAQLEADARTEAYTWLSQSTSTALALPVPPLRLRTGAKRGKPENGQTEGEGGVEDGREDASVRPWVDYRSFFTDSIRRLIEGLPGADKCKLYEFVDLRRPAFGQGGHREGKGGLGGGRDPLSDLVPASEGVKALAAASFGLESSAGVVNETVVLARAKAAAAAWAAA--------------------------------------------AAREMEREELIRLRCEEVRQREEERRQNKLMEKEEKKRSKEEQRWEKRMRQVERKRRKERIKELERELKRLRIRMDNDIQRRRAAARQLVQVGADAPAGMVAVPQLAHESLIDDAHLEETEKALPLPPSSTPSSNSRFSSANNLLSSRTMADVLQVWDVGYTLAGKMGMSEWPSLSLFLKALDAAEACKDRHPTPREERRMRVLSEVAQRLTGVLLPDIVQTLMYSSPSQGGSGAGSGAGIDPDPTLPLNEMTWPELARWAFMAQAYRVMQLPVDLAYALRGRGVDFQ 1301          
BLAST of EWM29567.1 vs. NCBI_GenBank
Match: gi|553193773|ref|XP_005855830.1| (hypothetical protein NGA_2094200, partial [Nannochloropsis gaditana CCMP526] >gi|422293231|gb|EKU20531.1| hypothetical protein NGA_2094200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1381.31 bits (3574), Expect = 0.000e+0
Identity = 678/682 (99.41%), Postives = 681/682 (99.85%), Query Frame = 0
Query: 2457 EEEGGEEEEKEGGEDERGGGTVCALCGETEEYLCNIMVHGPSAEDYYALPEEVREALEKRMVTEQQEKSADRYVFWQPVDENLALETERVLKEVFTSAPLAGSEGREKVKGPDGKREVPTLRKGSLITHECCADALVEAKAEAGARERRLRRKVGVESVAFMGRGRTAALGQDRGGRIYWQFAGEPSFLFVQPYDRQGQSEEGIAGSTDAMALIRQKHDEALAHSVDTGVLALGEGGREGSVEKWLVYESAEAIGKVVEEYLNPRGKKERALREAILRQYPDVRKFLRNKRSEEDDGETDNLGTGADENEVGQEETEKETAGATQALWGVGDAVFVEKHGVLWKAHVIFVNPDQGVVRVSYDGWAQADEWIPYVPGPSSLPSPSSTPDMERDAPPSLLPWTALRAEEHEEQWGKRQEIARARYVSPVPFVEKLRAFPYVTASNRNRQRSKAKLLPTRLRYEFRRKALNFSESEERMAGMEDVEEEEESLIEVKAAILTVEAALPLGCILDAPDEARKSIKLRRDEFNKWVRRVEMAATARELMECLILLEHSIDSRWRLNPFRSTYLLCMSSWAHALKYATPASLALRVWSLDRLLDYGRVELDTDGDSRRLSKGKSQPPGFIKPGTVGGGYVDIGVVPDFLPYVPEARAFAGGSGREGEDNGEEEGEWEDGGEGGVPPGTG 3138
            EEEGGEEEEKEGGEDERGGGTVCALCGETEEYLCNIMVHGPSAEDYYALPEEVREALEKR+VTEQQEKSADRYVFWQPVDENLALETERVLKEVFTSAPLAGSEGREKVKGPDGKREVPTLRKGSLITHECCADALVEAKAEAGARERRLRRKVGVESVAFMGRGRTAALGQDRGGRIYWQFAGEPSFLFVQPYDRQGQSEEGIAGSTDAMALIRQKHDEALAHSVDTGVLALGEGGREGSVEKWLVYESAEAIGKVVEEYLNPRGKKERALREAILRQYPDVRKFLRNKRSEEDDGETDNLGTGADENEVGQEET KETAGATQALWGVGDAVFVEKHGVLWKAHVIFVNPDQGVVRVSYDGWAQADEWIPYVPGPSSLPSPSS+PDMERDAPPSLLPWTALRAEEHEEQWGKRQEIARARYVSPVPFVEKLRAFPYVTASNRNRQRSKAKLLPTRLRYEFRRKALNFSESEERMAGMEDVEEEEESLIEVKAAILTVEAALPLGCILDAPDEARKSIKLRRDEFNKWVRRVEMAATARELMECLILLEHSIDSRWRLNPFRSTYLLCMSSWAHA+KYATPASLALRVWSLDRLLDYGRVELDTDGDSRRLSKGKSQPPGFIKPGTVGGGYVDIGVVPDFLPYVPEARAFAGGSGREGEDNGEEEGEWEDGGEGGVPPGTG
Sbjct:    1 EEEGGEEEEKEGGEDERGGGTVCALCGETEEYLCNIMVHGPSAEDYYALPEEVREALEKRLVTEQQEKSADRYVFWQPVDENLALETERVLKEVFTSAPLAGSEGREKVKGPDGKREVPTLRKGSLITHECCADALVEAKAEAGARERRLRRKVGVESVAFMGRGRTAALGQDRGGRIYWQFAGEPSFLFVQPYDRQGQSEEGIAGSTDAMALIRQKHDEALAHSVDTGVLALGEGGREGSVEKWLVYESAEAIGKVVEEYLNPRGKKERALREAILRQYPDVRKFLRNKRSEEDDGETDNLGTGADENEVGQEETGKETAGATQALWGVGDAVFVEKHGVLWKAHVIFVNPDQGVVRVSYDGWAQADEWIPYVPGPSSLPSPSSSPDMERDAPPSLLPWTALRAEEHEEQWGKRQEIARARYVSPVPFVEKLRAFPYVTASNRNRQRSKAKLLPTRLRYEFRRKALNFSESEERMAGMEDVEEEEESLIEVKAAILTVEAALPLGCILDAPDEARKSIKLRRDEFNKWVRRVEMAATARELMECLILLEHSIDSRWRLNPFRSTYLLCMSSWAHAVKYATPASLALRVWSLDRLLDYGRVELDTDGDSRRLSKGKSQPPGFIKPGTVGGGYVDIGVVPDFLPYVPEARAFAGGSGREGEDNGEEEGEWEDGGEGGVPPGTG 682          
BLAST of EWM29567.1 vs. NCBI_GenBank
Match: gi|553187211|ref|XP_005854566.1| (dna binding protein [Nannochloropsis gaditana CCMP526] >gi|422294497|gb|EKU21797.1| dna binding protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 952.199 bits (2460), Expect = 0.000e+0
Identity = 478/548 (87.23%), Postives = 485/548 (88.50%), Query Frame = 0
Query: 1459 VQEASRILAPFREEGENQNKKGWLEAIKQAVEKAMTALDMYQSNLGEGGIWKELETDPIAGSMQRGGEQRPPQAPQQEEEEEEEAEKDLQEHWQSPSSVEGAGGKIRVGDSRSGVGGGAGEGEIKQDGEELQKVSGTPAIPSSLNRAMTSESIASMSAPSVTSTTGDGLPQLASSTVPSLPASPSLGGTEGGGNNGVSLACSTASFETDSLDSESRRSSAEKEGGSRGGKKEKRKRRRSSLGLGAEREECETVEGKEEEDGMGILTKGGEEEEEEDEEDEEEEEEEEDEEDIDAYRDITPEDFEAKAEIIRRCYAILQALMQAKGGSLFKYQPHVEGYGEVVARPLGLMDVTRNLRNGQYDDSVGRFAADVRRVFINCALFNPENDVILHDADRLVARFDRLLLQWVLDVDAPPLEELGLDTTCKVCRDPYPQSVEVTLVGGIKEWRQVSPQQCNRCDASFHPDCVKMPVLHPNRNVSEQGKEKEYWFCEDCIRERMPKDVDPFLRLRVVKHFPGVGAFAGRVASVRYTREKAVYTLLFRNPSPSSSS 2006
            ++EASRILAPFREEGENQNKKGWLEAIKQAVEKAMTALDMYQSNLGEGGIWKELETDPIAGSMQRGGEQRPPQAPQQEEEEEEEAEKD+QEHWQSPSSVEGAGGKIRVGDSRSGVGGGAGEGEIKQDGEELQKVSGTPAIPSSLNRAMTSESIASMSAPSVTSTTGDGLPQLASSTVPSLPASPSLGG                               AE+E                         ECETVEGKEEEDGMGILTKGGEEEEEEDEEDEEEEEEEEDEEDIDAYRDITPEDFEAKAEIIRRCYAILQALMQAKGGSLFKYQPHVEGYGEVVARPLGLMDVTRNLRNGQYDDSVGRFAADVRRVFINCALFNPENDVILHDADRLVARFDRLLLQWVLDVDAPPLEELGLDTTCKVCRDPYPQSVEVTLVGGIKEWRQVSPQQCNRCDASFHPDCVKMPVLHPNRNVSEQGKEKEYWFCEDCIRERMPKDVDPFLRLRVVKHFPGVGAFAGRVASVRYTREKAV   +F N + +S S
Sbjct:  298 LREASRILAPFREEGENQNKKGWLEAIKQAVEKAMTALDMYQSNLGEGGIWKELETDPIAGSMQRGGEQRPPQAPQQEEEEEEEAEKDMQEHWQSPSSVEGAGGKIRVGDSRSGVGGGAGEGEIKQDGEELQKVSGTPAIPSSLNRAMTSESIASMSAPSVTSTTGDGLPQLASSTVPSLPASPSLGGL-----------------------------GAERE-------------------------ECETVEGKEEEDGMGILTKGGEEEEEEDEEDEEEEEEEEDEEDIDAYRDITPEDFEAKAEIIRRCYAILQALMQAKGGSLFKYQPHVEGYGEVVARPLGLMDVTRNLRNGQYDDSVGRFAADVRRVFINCALFNPENDVILHDADRLVARFDRLLLQWVLDVDAPPLEELGLDTTCKVCRDPYPQSVEVTLVGGIKEWRQVSPQQCNRCDASFHPDCVKMPVLHPNRNVSEQGKEKEYWFCEDCIRERMPKDVDPFLRLRVVKHFPGVGAFAGRVASVRYTREKAV---VFPNRTQNSRS 788          

HSP 2 Score: 606.675 bits (1563), Expect = 0.000e+0
Identity = 299/299 (100.00%), Postives = 299/299 (100.00%), Query Frame = 0
Query: 1067 MEREELIRLRCEEVRQREEERRQNKLMEKEEKKRSKEEQRWEKRMRQVERKRRKERIKELERELKRLRIRMDNDIQRRRAAARQLVQVGADAPAGMVAVPQLAHESLIDDAHLEETEKALPLPPSSTPSSNSRFSSANNLLSSRTMADVLQVWDVGYTLAGKMGMSEWPSLSLFLKALDAAEACKDRHPTPREERRMRVLSEVAQRLTGVLLPDIVQTLMYSSPSQGGSGAGSGAGIDPDPTLPLNEMTWPELARWAFMAQAYRVMQLPVDLAYALRGRGVDFQMDAWDKKALTMGRLR 1365
            MEREELIRLRCEEVRQREEERRQNKLMEKEEKKRSKEEQRWEKRMRQVERKRRKERIKELERELKRLRIRMDNDIQRRRAAARQLVQVGADAPAGMVAVPQLAHESLIDDAHLEETEKALPLPPSSTPSSNSRFSSANNLLSSRTMADVLQVWDVGYTLAGKMGMSEWPSLSLFLKALDAAEACKDRHPTPREERRMRVLSEVAQRLTGVLLPDIVQTLMYSSPSQGGSGAGSGAGIDPDPTLPLNEMTWPELARWAFMAQAYRVMQLPVDLAYALRGRGVDFQMDAWDKKALTMGRLR
Sbjct:    1 MEREELIRLRCEEVRQREEERRQNKLMEKEEKKRSKEEQRWEKRMRQVERKRRKERIKELERELKRLRIRMDNDIQRRRAAARQLVQVGADAPAGMVAVPQLAHESLIDDAHLEETEKALPLPPSSTPSSNSRFSSANNLLSSRTMADVLQVWDVGYTLAGKMGMSEWPSLSLFLKALDAAEACKDRHPTPREERRMRVLSEVAQRLTGVLLPDIVQTLMYSSPSQGGSGAGSGAGIDPDPTLPLNEMTWPELARWAFMAQAYRVMQLPVDLAYALRGRGVDFQMDAWDKKALTMGRLR 299          
The following BLAST results are available for this feature:
BLAST of EWM29567.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585112138|gb|EWM29567.1|0.000e+0100.00pstvd rna-biding virp1 [Nannochloropsis gaditana][more]
gi|553188038|ref|XP_005854723.1|0.000e+096.51dna binding protein, partial [Nannochloropsis gadi... [more]
gi|553193773|ref|XP_005855830.1|0.000e+099.41hypothetical protein NGA_2094200, partial [Nannoch... [more]
gi|553187211|ref|XP_005854566.1|0.000e+087.23dna binding protein [Nannochloropsis gaditana CCMP... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1156rna1156Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications