EWM29582.1, cds1136 (CDS) Nannochloropsis gaditana

Overview
NameEWM29582.1
Unique Namecds1136
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1278651..1279265 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29582.1
Productdna replication complex gins protein psf3
Orig transcript idgnl|cribi|Naga_100006g30.8671.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1278651..1279265 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR010492GINS_Psf3
IPR021151GINS_complex
Homology
BLAST of EWM29582.1 vs. NCBI_GenBank
Match: gi|585112153|gb|EWM29582.1| (dna replication complex gins protein psf3 [Nannochloropsis gaditana])

HSP 1 Score: 416.772 bits (1070), Expect = 1.748e-147
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0
Query:    1 MDRGYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDDHLQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAGSQGSKAQEAYKKGTHAQLDMAEVLKGGSAPADRTVGGQGGKESNPSL 204
            MDRGYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDDHLQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAGSQGSKAQEAYKKGTHAQLDMAEVLKGGSAPADRTVGGQGGKESNPSL
Sbjct:    1 MDRGYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDDHLQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAGSQGSKAQEAYKKGTHAQLDMAEVLKGGSAPADRTVGGQGGKESNPSL 204          
BLAST of EWM29582.1 vs. NCBI_GenBank
Match: gi|553180680|ref|XP_005853444.1| (dna replication complex gins protein psf3 [Nannochloropsis gaditana CCMP526] >gi|422295617|gb|EKU22916.1| dna replication complex gins protein psf3 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 415.231 bits (1066), Expect = 1.001e-146
Identity = 203/204 (99.51%), Postives = 203/204 (99.51%), Query Frame = 0
Query:    1 MDRGYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDDHLQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAGSQGSKAQEAYKKGTHAQLDMAEVLKGGSAPADRTVGGQGGKESNPSL 204
            MDRGYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDDHLQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAGSQGSKAQEAYKKGTHAQLDMAEVLKGGSAP DRTVGGQGGKESNPSL
Sbjct:    1 MDRGYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDDHLQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAGSQGSKAQEAYKKGTHAQLDMAEVLKGGSAPVDRTVGGQGGKESNPSL 204          
BLAST of EWM29582.1 vs. NCBI_GenBank
Match: gi|298714927|emb|CBJ27683.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 177.948 bits (450), Expect = 3.322e-53
Identity = 83/180 (46.11%), Postives = 118/180 (65.56%), Query Frame = 0
Query:    4 GYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDDHLQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAGSQGSKAQEAYKKGTHAQLDMAEVLKG 183
            GY+ +D IL+ E RVP VF   A  +G LDP   DEDL   ++V+ PLW+A  L  K MV ++LP+HY+ RFRE L AGP AV++RER  F+YE G  LA +  D  LQ T+ MVF+G RF+ +LD SLNS  +D+  F +DLP+ E++LF+AG + S+    +K     +L  ++V++G
Sbjct:    5 GYYDIDTILSEEIRVPCVFTLDAVGMGVLDPTTSDEDLSQGAKVDFPLWMARPLAGKGMVNLDLPKHYTDRFREQLEAGPGAVNLRERCPFYYEVGVVLASLMGDQRLQDTLLMVFSGERFKRLLDCSLNSLNEDVNSFTRDLPNLEKSLFNAGYRSSEEYVGWKSRAFNKLATSKVIQG 184          
BLAST of EWM29582.1 vs. NCBI_GenBank
Match: gi|698782033|ref|XP_009824060.1| (hypothetical protein H257_02218 [Aphanomyces astaci] >gi|574121784|gb|ETV87261.1| hypothetical protein H257_02218 [Aphanomyces astaci])

HSP 1 Score: 125.561 bits (314), Expect = 1.029e-32
Identity = 61/158 (38.61%), Postives = 98/158 (62.03%), Query Frame = 0
Query:    4 GYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDD----HLQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAG 157
            GY+SVD +LA E+RV  VF T AA  G++DP+ + +D+   +++ELP+WLA AL     V V +P   S R+R  + AGP A ++R+ + FF+E G A+  +  ++     ++  +R+ F G R++ ILD S+NS  +D T+F + L   E+ L+ AG
Sbjct:    2 GYYSVDELLAEEERVQCVFQTEAAGCGYMDPSTEGDDILQNTKLELPVWLATALAKHGTVDVLVPTCLSVRYRNVIKAGPSAANLRDMNPFFFELGKAVLPLLTNEADAQEIEDILRVAFGGERYKQILDQSMNSYDEDTTEFTRKLTEFEKDLYAAG 159          
BLAST of EWM29582.1 vs. NCBI_GenBank
Match: gi|669152840|ref|XP_008611982.1| (hypothetical protein SDRG_07901 [Saprolegnia diclina VS20] >gi|530736334|gb|EQC34576.1| hypothetical protein SDRG_07901 [Saprolegnia diclina VS20])

HSP 1 Score: 122.865 bits (307), Expect = 1.051e-31
Identity = 64/183 (34.97%), Postives = 107/183 (58.47%), Query Frame = 0
Query:    4 GYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDDH----LQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAGSQGSKAQEAYKKGTHAQLDMAEVLK 182
            GY+SV A++A E+RV  VF T A   GFLDP+   +DL   +++ELPLW+A AL   N V+  +P   ++RFR  + AGP A ++R+ + +++E G  +  +  D+     +   +R+ F G R++ ILD S+NS  +D T+F + L   E+ LF AG   ++    +K   +  +  A+V++
Sbjct:    2 GYYSVGALIAEEERVQCVFQTDATDCGFLDPSSLGKDLAMNTKLELPLWMASALARHNTVKTLVPTCLNSRFRNVVKAGPSAANLRDMNPYYFEVGKQVLPLIEDEDEGRAIDEILRVAFGGERYKAILDQSMNSHDEDTTEFTRKLTEFEKDLFLAGVDDAEDFLRWKGRENGLIACAKVIQ 184          
BLAST of EWM29582.1 vs. NCBI_GenBank
Match: gi|675196607|ref|XP_008907188.1| (hypothetical protein PPTG_13335 [Phytophthora parasitica INRA-310] >gi|566021155|gb|ETI44066.1| hypothetical protein F443_11195 [Phytophthora parasitica P1569] >gi|567987213|gb|ETL37522.1| hypothetical protein L916_10800 [Phytophthora parasitica] >gi|568046850|gb|ETM43955.1| hypothetical protein L914_10750 [Phytophthora parasitica] >gi|568092626|gb|ETN07431.1| hypothetical protein PPTG_13335 [Phytophthora parasitica INRA-310] >gi|570324804|gb|ETO72752.1| hypothetical protein F444_11251 [Phytophthora parasitica P1976] >gi|570948629|gb|ETP13886.1| hypothetical protein F441_11106 [Phytophthora parasitica CJ01A1] >gi|970657183|gb|KUF95101.1| ATP-binding Cassette (ABC) Superfamily [Phytophthora nicotianae])

HSP 1 Score: 122.479 bits (306), Expect = 1.446e-31
Identity = 66/185 (35.68%), Postives = 106/185 (57.30%), Query Frame = 0
Query:    1 MDRGYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDD---HLQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAGSQGSKAQEAYKKGTHAQLDMAEVLK 182
            M+ GY  +DAILA ++R+   F T A   G+LDP+C++ DL   + VELPLWLA  L  +  V VE P + + RFR  L AGP +V++RE S++  + G  L     D+    +   +R+ F G R+R +L+ +++S  +D T+F + L   E+ LF AG++ +K    +K      +  A V++
Sbjct:    1 MNGGYLDIDAILAEDERIKCKFETDALDCGYLDPSCREPDLSEGAVVELPLWLARPLAKRGDVVVEPPHYLTKRFRRMLKAGPSSVNLREFSSYVMDVGRQLLPYVTDEEQREIGEILRLCFGGERYRDLLNNAMSSLDEDTTEFTRKLTQDEKKLFDAGTRDAKDFIQWKGRNAETITAANVVE 185          
BLAST of EWM29582.1 vs. NCBI_GenBank
Match: gi|673023510|ref|XP_008865716.1| (hypothetical protein H310_03573 [Aphanomyces invadans] >gi|574478944|gb|ETW05939.1| hypothetical protein H310_03573 [Aphanomyces invadans])

HSP 1 Score: 121.709 bits (304), Expect = 2.943e-31
Identity = 59/158 (37.34%), Postives = 97/158 (61.39%), Query Frame = 0
Query:    4 GYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDDH----LQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAG 157
            GY+SV+ +LA E+RV  VF T AA  G++DP+ + +D+   +++ELP+WLA AL     V V +P   SAR+R  + AGP A ++R+ + +F+E G  L  +  ++     ++  +R+ F   R++ ILD S+NS  +D T+F + L   E+ L+ AG
Sbjct:    2 GYYSVEELLAEEERVQCVFQTEAAGCGYMDPSIEGDDIKPNTKLELPVWLATALAKHGTVDVLVPTCLSARYRNVIKAGPSAANLRDMNPYFFELGKVLLPLLTNESDSQDIEDILRIAFGSERYKQILDQSMNSFDEDTTEFTRKLTEFEKDLYAAG 159          
BLAST of EWM29582.1 vs. NCBI_GenBank
Match: gi|1173932871|gb|OQR84769.1| (hypothetical protein ACHHYP_12977 [Achlya hypogyna])

HSP 1 Score: 121.709 bits (304), Expect = 2.991e-31
Identity = 61/183 (33.33%), Postives = 104/183 (56.83%), Query Frame = 0
Query:    4 GYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDDH----LQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAGSQGSKAQEAYKKGTHAQLDMAEVLK 182
            GYF V  +L+ E+R+  VF T A   GFLDP+   +DL A +++ELPLW+  AL     V+  +P   ++R R  + AGP A ++R+ + +++E G  +  +  D+     +   +R+ F G R++ ILD S+NS  +D T+F + L   E+ LFHAG   ++    +K   +  +  A+V++
Sbjct:    2 GYFDVTELLSEEERIQCVFQTDATDCGFLDPSSLGKDLAANTKLELPLWMTAALTRHGSVKTVVPTCLNSRSRNVVKAGPSAANLRDMNPYYFEVGKKVLPLIEDEDEGRAIDEILRIAFGGERYKQILDQSMNSHDEDTTEFTRKLTEFEKELFHAGVDDAEDFLRWKGRENGHIACAKVMQ 184          
BLAST of EWM29582.1 vs. NCBI_GenBank
Match: gi|567958498|gb|ETK84085.1| (hypothetical protein L915_10906 [Phytophthora parasitica] >gi|568016482|gb|ETL90659.1| hypothetical protein L917_10709 [Phytophthora parasitica] >gi|570981542|gb|ETP41935.1| hypothetical protein F442_11099 [Phytophthora parasitica P10297])

HSP 1 Score: 121.709 bits (304), Expect = 3.387e-31
Identity = 66/185 (35.68%), Postives = 105/185 (56.76%), Query Frame = 0
Query:    1 MDRGYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDD---HLQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAGSQGSKAQEAYKKGTHAQLDMAEVLK 182
            M+ GY  +DAILA ++R+   F T A   G+LDP+C++ DL   + VELPLWLA  L  +  V VE P + + RFR  L AGP +V++RE S +  + G  L     D+    +   +R+ F G R+R +L+ +++S  +D T+F + L   E+ LF AG++ +K    +K      +  A V++
Sbjct:    1 MNGGYLDIDAILAEDERIKCKFETDALDCGYLDPSCREPDLSEGAVVELPLWLARPLAKRGDVVVEPPHYLTKRFRRMLKAGPSSVNLREFSNYVMDVGRQLLPYVTDEEQREIGEILRLCFGGERYRDLLNNAMSSLDEDTTEFTRKLTQDEKKLFDAGTRDAKDFIQWKGRNAETITAANVVE 185          
BLAST of EWM29582.1 vs. NCBI_GenBank
Match: gi|813112226|ref|XP_012195257.1| (hypothetical protein SPRG_19061 [Saprolegnia parasitica CBS 223.65] >gi|641540441|gb|KDO34223.1| hypothetical protein SPRG_19061 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 120.168 bits (300), Expect = 1.267e-30
Identity = 59/158 (37.34%), Postives = 95/158 (60.13%), Query Frame = 0
Query:    4 GYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDDH----LQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAG 157
            GY+SV  ++A E+R+  VF T A   GFLDP+   +DL   +++ELPLW+A AL   N V+  +P   ++RFR  + AGP A ++R+ + +++E G  +  +  D+     +   +R+ F G R++ ILD S+NS  +D T+F + L   E+ LF AG
Sbjct:    2 GYYSVAELIAEEERIQCVFQTDATDCGFLDPSSLGKDLSMDTKLELPLWMASALARHNTVKTLVPTCLNSRFRNVVKAGPSAANLRDMNPYYFEVGKQVLPLIEDEDEGRAIDEILRVAFGGERYKAILDQSMNSHDEDTTEFTRKLTEYEKDLFLAG 159          
The following BLAST results are available for this feature:
BLAST of EWM29582.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112153|gb|EWM29582.1|1.748e-147100.00dna replication complex gins protein psf3 [Nannoch... [more]
gi|553180680|ref|XP_005853444.1|1.001e-14699.51dna replication complex gins protein psf3 [Nannoch... [more]
gi|298714927|emb|CBJ27683.1|3.322e-5346.11conserved unknown protein [Ectocarpus siliculosus][more]
gi|698782033|ref|XP_009824060.1|1.029e-3238.61hypothetical protein H257_02218 [Aphanomyces astac... [more]
gi|669152840|ref|XP_008611982.1|1.051e-3134.97hypothetical protein SDRG_07901 [Saprolegnia dicli... [more]
gi|675196607|ref|XP_008907188.1|1.446e-3135.68hypothetical protein PPTG_13335 [Phytophthora para... [more]
gi|673023510|ref|XP_008865716.1|2.943e-3137.34hypothetical protein H310_03573 [Aphanomyces invad... [more]
gi|1173932871|gb|OQR84769.1|2.991e-3133.33hypothetical protein ACHHYP_12977 [Achlya hypogyna... [more]
gi|567958498|gb|ETK84085.1|3.387e-3135.68hypothetical protein L915_10906 [Phytophthora para... [more]
gi|813112226|ref|XP_012195257.1|1.267e-3037.34hypothetical protein SPRG_19061 [Saprolegnia paras... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1137rna1137Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications