EWM29582.1, cds1136 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29582.1 vs. NCBI_GenBank
Match: gi|585112153|gb|EWM29582.1| (dna replication complex gins protein psf3 [Nannochloropsis gaditana]) HSP 1 Score: 416.772 bits (1070), Expect = 1.748e-147 Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0 Query: 1 MDRGYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDDHLQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAGSQGSKAQEAYKKGTHAQLDMAEVLKGGSAPADRTVGGQGGKESNPSL 204 MDRGYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDDHLQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAGSQGSKAQEAYKKGTHAQLDMAEVLKGGSAPADRTVGGQGGKESNPSL Sbjct: 1 MDRGYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDDHLQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAGSQGSKAQEAYKKGTHAQLDMAEVLKGGSAPADRTVGGQGGKESNPSL 204
BLAST of EWM29582.1 vs. NCBI_GenBank
Match: gi|553180680|ref|XP_005853444.1| (dna replication complex gins protein psf3 [Nannochloropsis gaditana CCMP526] >gi|422295617|gb|EKU22916.1| dna replication complex gins protein psf3 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 415.231 bits (1066), Expect = 1.001e-146 Identity = 203/204 (99.51%), Postives = 203/204 (99.51%), Query Frame = 0 Query: 1 MDRGYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDDHLQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAGSQGSKAQEAYKKGTHAQLDMAEVLKGGSAPADRTVGGQGGKESNPSL 204 MDRGYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDDHLQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAGSQGSKAQEAYKKGTHAQLDMAEVLKGGSAP DRTVGGQGGKESNPSL Sbjct: 1 MDRGYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDDHLQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAGSQGSKAQEAYKKGTHAQLDMAEVLKGGSAPVDRTVGGQGGKESNPSL 204
BLAST of EWM29582.1 vs. NCBI_GenBank
Match: gi|298714927|emb|CBJ27683.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 177.948 bits (450), Expect = 3.322e-53 Identity = 83/180 (46.11%), Postives = 118/180 (65.56%), Query Frame = 0 Query: 4 GYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDDHLQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAGSQGSKAQEAYKKGTHAQLDMAEVLKG 183 GY+ +D IL+ E RVP VF A +G LDP DEDL ++V+ PLW+A L K MV ++LP+HY+ RFRE L AGP AV++RER F+YE G LA + D LQ T+ MVF+G RF+ +LD SLNS +D+ F +DLP+ E++LF+AG + S+ +K +L ++V++G Sbjct: 5 GYYDIDTILSEEIRVPCVFTLDAVGMGVLDPTTSDEDLSQGAKVDFPLWMARPLAGKGMVNLDLPKHYTDRFREQLEAGPGAVNLRERCPFYYEVGVVLASLMGDQRLQDTLLMVFSGERFKRLLDCSLNSLNEDVNSFTRDLPNLEKSLFNAGYRSSEEYVGWKSRAFNKLATSKVIQG 184
BLAST of EWM29582.1 vs. NCBI_GenBank
Match: gi|698782033|ref|XP_009824060.1| (hypothetical protein H257_02218 [Aphanomyces astaci] >gi|574121784|gb|ETV87261.1| hypothetical protein H257_02218 [Aphanomyces astaci]) HSP 1 Score: 125.561 bits (314), Expect = 1.029e-32 Identity = 61/158 (38.61%), Postives = 98/158 (62.03%), Query Frame = 0 Query: 4 GYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDD----HLQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAG 157 GY+SVD +LA E+RV VF T AA G++DP+ + +D+ +++ELP+WLA AL V V +P S R+R + AGP A ++R+ + FF+E G A+ + ++ ++ +R+ F G R++ ILD S+NS +D T+F + L E+ L+ AG Sbjct: 2 GYYSVDELLAEEERVQCVFQTEAAGCGYMDPSTEGDDILQNTKLELPVWLATALAKHGTVDVLVPTCLSVRYRNVIKAGPSAANLRDMNPFFFELGKAVLPLLTNEADAQEIEDILRVAFGGERYKQILDQSMNSYDEDTTEFTRKLTEFEKDLYAAG 159
BLAST of EWM29582.1 vs. NCBI_GenBank
Match: gi|669152840|ref|XP_008611982.1| (hypothetical protein SDRG_07901 [Saprolegnia diclina VS20] >gi|530736334|gb|EQC34576.1| hypothetical protein SDRG_07901 [Saprolegnia diclina VS20]) HSP 1 Score: 122.865 bits (307), Expect = 1.051e-31 Identity = 64/183 (34.97%), Postives = 107/183 (58.47%), Query Frame = 0 Query: 4 GYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDDH----LQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAGSQGSKAQEAYKKGTHAQLDMAEVLK 182 GY+SV A++A E+RV VF T A GFLDP+ +DL +++ELPLW+A AL N V+ +P ++RFR + AGP A ++R+ + +++E G + + D+ + +R+ F G R++ ILD S+NS +D T+F + L E+ LF AG ++ +K + + A+V++ Sbjct: 2 GYYSVGALIAEEERVQCVFQTDATDCGFLDPSSLGKDLAMNTKLELPLWMASALARHNTVKTLVPTCLNSRFRNVVKAGPSAANLRDMNPYYFEVGKQVLPLIEDEDEGRAIDEILRVAFGGERYKAILDQSMNSHDEDTTEFTRKLTEFEKDLFLAGVDDAEDFLRWKGRENGLIACAKVIQ 184
BLAST of EWM29582.1 vs. NCBI_GenBank
Match: gi|675196607|ref|XP_008907188.1| (hypothetical protein PPTG_13335 [Phytophthora parasitica INRA-310] >gi|566021155|gb|ETI44066.1| hypothetical protein F443_11195 [Phytophthora parasitica P1569] >gi|567987213|gb|ETL37522.1| hypothetical protein L916_10800 [Phytophthora parasitica] >gi|568046850|gb|ETM43955.1| hypothetical protein L914_10750 [Phytophthora parasitica] >gi|568092626|gb|ETN07431.1| hypothetical protein PPTG_13335 [Phytophthora parasitica INRA-310] >gi|570324804|gb|ETO72752.1| hypothetical protein F444_11251 [Phytophthora parasitica P1976] >gi|570948629|gb|ETP13886.1| hypothetical protein F441_11106 [Phytophthora parasitica CJ01A1] >gi|970657183|gb|KUF95101.1| ATP-binding Cassette (ABC) Superfamily [Phytophthora nicotianae]) HSP 1 Score: 122.479 bits (306), Expect = 1.446e-31 Identity = 66/185 (35.68%), Postives = 106/185 (57.30%), Query Frame = 0 Query: 1 MDRGYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDD---HLQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAGSQGSKAQEAYKKGTHAQLDMAEVLK 182 M+ GY +DAILA ++R+ F T A G+LDP+C++ DL + VELPLWLA L + V VE P + + RFR L AGP +V++RE S++ + G L D+ + +R+ F G R+R +L+ +++S +D T+F + L E+ LF AG++ +K +K + A V++ Sbjct: 1 MNGGYLDIDAILAEDERIKCKFETDALDCGYLDPSCREPDLSEGAVVELPLWLARPLAKRGDVVVEPPHYLTKRFRRMLKAGPSSVNLREFSSYVMDVGRQLLPYVTDEEQREIGEILRLCFGGERYRDLLNNAMSSLDEDTTEFTRKLTQDEKKLFDAGTRDAKDFIQWKGRNAETITAANVVE 185
BLAST of EWM29582.1 vs. NCBI_GenBank
Match: gi|673023510|ref|XP_008865716.1| (hypothetical protein H310_03573 [Aphanomyces invadans] >gi|574478944|gb|ETW05939.1| hypothetical protein H310_03573 [Aphanomyces invadans]) HSP 1 Score: 121.709 bits (304), Expect = 2.943e-31 Identity = 59/158 (37.34%), Postives = 97/158 (61.39%), Query Frame = 0 Query: 4 GYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDDH----LQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAG 157 GY+SV+ +LA E+RV VF T AA G++DP+ + +D+ +++ELP+WLA AL V V +P SAR+R + AGP A ++R+ + +F+E G L + ++ ++ +R+ F R++ ILD S+NS +D T+F + L E+ L+ AG Sbjct: 2 GYYSVEELLAEEERVQCVFQTEAAGCGYMDPSIEGDDIKPNTKLELPVWLATALAKHGTVDVLVPTCLSARYRNVIKAGPSAANLRDMNPYFFELGKVLLPLLTNESDSQDIEDILRIAFGSERYKQILDQSMNSFDEDTTEFTRKLTEFEKDLYAAG 159
BLAST of EWM29582.1 vs. NCBI_GenBank
Match: gi|1173932871|gb|OQR84769.1| (hypothetical protein ACHHYP_12977 [Achlya hypogyna]) HSP 1 Score: 121.709 bits (304), Expect = 2.991e-31 Identity = 61/183 (33.33%), Postives = 104/183 (56.83%), Query Frame = 0 Query: 4 GYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDDH----LQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAGSQGSKAQEAYKKGTHAQLDMAEVLK 182 GYF V +L+ E+R+ VF T A GFLDP+ +DL A +++ELPLW+ AL V+ +P ++R R + AGP A ++R+ + +++E G + + D+ + +R+ F G R++ ILD S+NS +D T+F + L E+ LFHAG ++ +K + + A+V++ Sbjct: 2 GYFDVTELLSEEERIQCVFQTDATDCGFLDPSSLGKDLAANTKLELPLWMTAALTRHGSVKTVVPTCLNSRSRNVVKAGPSAANLRDMNPYYFEVGKKVLPLIEDEDEGRAIDEILRIAFGGERYKQILDQSMNSHDEDTTEFTRKLTEFEKELFHAGVDDAEDFLRWKGRENGHIACAKVMQ 184
BLAST of EWM29582.1 vs. NCBI_GenBank
Match: gi|567958498|gb|ETK84085.1| (hypothetical protein L915_10906 [Phytophthora parasitica] >gi|568016482|gb|ETL90659.1| hypothetical protein L917_10709 [Phytophthora parasitica] >gi|570981542|gb|ETP41935.1| hypothetical protein F442_11099 [Phytophthora parasitica P10297]) HSP 1 Score: 121.709 bits (304), Expect = 3.387e-31 Identity = 66/185 (35.68%), Postives = 105/185 (56.76%), Query Frame = 0 Query: 1 MDRGYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDD---HLQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAGSQGSKAQEAYKKGTHAQLDMAEVLK 182 M+ GY +DAILA ++R+ F T A G+LDP+C++ DL + VELPLWLA L + V VE P + + RFR L AGP +V++RE S + + G L D+ + +R+ F G R+R +L+ +++S +D T+F + L E+ LF AG++ +K +K + A V++ Sbjct: 1 MNGGYLDIDAILAEDERIKCKFETDALDCGYLDPSCREPDLSEGAVVELPLWLARPLAKRGDVVVEPPHYLTKRFRRMLKAGPSSVNLREFSNYVMDVGRQLLPYVTDEEQREIGEILRLCFGGERYRDLLNNAMSSLDEDTTEFTRKLTQDEKKLFDAGTRDAKDFIQWKGRNAETITAANVVE 185
BLAST of EWM29582.1 vs. NCBI_GenBank
Match: gi|813112226|ref|XP_012195257.1| (hypothetical protein SPRG_19061 [Saprolegnia parasitica CBS 223.65] >gi|641540441|gb|KDO34223.1| hypothetical protein SPRG_19061 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 120.168 bits (300), Expect = 1.267e-30 Identity = 59/158 (37.34%), Postives = 95/158 (60.13%), Query Frame = 0 Query: 4 GYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDDH----LQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAG 157 GY+SV ++A E+R+ VF T A GFLDP+ +DL +++ELPLW+A AL N V+ +P ++RFR + AGP A ++R+ + +++E G + + D+ + +R+ F G R++ ILD S+NS +D T+F + L E+ LF AG Sbjct: 2 GYYSVAELIAEEERIQCVFQTDATDCGFLDPSSLGKDLSMDTKLELPLWMASALARHNTVKTLVPTCLNSRFRNVVKAGPSAANLRDMNPYYFEVGKQVLPLIEDEDEGRAIDEILRVAFGGERYKAILDQSMNSHDEDTTEFTRKLTEYEKDLFLAG 159 The following BLAST results are available for this feature:
BLAST of EWM29582.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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