rna1057, rna1057 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1057
Unique Name	rna1057
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2100
Alignment location	CM002456.1:1065150..1068069 -

Link to JBrowse

Properties


Property Name	Value
Product	origin recognition complex subunit 2
Orig transcript id	gnl\|cribi\|Naga_100006g111.8654.mrna
Orig protein id	gnl\|cribi\|Naga_100006g111.8654
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1065150..1068069 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g111	gene1018	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29565.1	cds1056	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1057	rna1057-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1065150..1068069-
coding sequence from alignment at CM002456.1:1065150..1068069-

mRNA sequence

>rna1057 ID=rna1057|Name=rna1057|organism=Nannochloropsis gaditana|type=mRNA|length=2100bp
GGTGACGTCCAGGCACAGGACCGCCGGTGCAGACGCCTTAGCACGAGCTA
CGGCCCCTGCCCGGGGGTGCAGAGCCCGGGCGACCTGAAGGGTCTGGTGT
GGCAGGGCATCCCCCCTGACCTCAGAGACCCGGTCTACGAGTGGTTGAGC
GGCGCGTCCTGCAAGCGGGAGGCTTTGGGTGTGAACTACTATCACACGTT
AGCGGCCGCCAGCGAGGAGGAGAACCTAGGGCTGGGTGTGATCGGGGGAG
AGGAGGGGGAGGAGGGGGAGGAGGCCTGGGTGTGTGTGACGCGGGAGCGG
GAGGACGCTGGGGTGGGGATGGGCGGCACCGGCGTGCACGGAGGAGAAGG
CCTCAGGTGGGAAGGTGGGGCCGGTTCAGGCACGGGTGGGGGCTATGTAG
GAAGGCGGGGGGCGGGGGGTAAGGGAGGGATGGTGGTGGATGTGGTCATG
CCGGAGCTGGATGCGGCGTGGGGCGCCAAGGTAGCGCAAGACATCGAGCT
GGATTTGGGGAGGGCCTTCACGGATTCGGATGCCGCCATCAACACGCCTG
AGGGGAGGGCAAGGCTCCGCCGGGTCCTGCGGGCTTACGCACTTCGAAAC
CCCTCGGTGGGCTACTGCCAGGGTATGAATTTCATCGCAGGCCTCCTTTT
GCTGGCGGTGAGCGAGGAGACGGCGTTCTGGACCCTGGCGCACGTTTGTG
AAGAGGTCAGTCCCCTTTGCTTCTCCCCACCCCTGCTGGGGACGCGGGCC
GACATGCGGGCCTTGGGGGAGTTGCTGAAAGCGGAGCTTCCGGCCCTGTA
CGAGCACTGCAGCGCGCTCTACCTGAATTTGGAAATGATGGCCGGGCACT
GGCTCCTGGTCTATTTCATCAACATCTTTCCTCCCCCGGTGGCCCTGCGC
ATCCTGGAGATTTCCATGGCTGAAGGCTCGGACGTGACCTTCGCCGTCGC
CCTGGCGTTCTTGCGGGGATTGGAGGCGGAGCTCTTGGCCTGCGACGATT
TGCACGAGCTCTCACAATTGGTCCGAATCAGACAGGCAGGCATGTACGAC
GCGGATGCCCTGCTGCACCAAACCCGCGTGCAACTCAGACGCATGCGTTC
CAATCTGAGAATTTTGCGCGCCTGGCACTTGGGGGATTTGATGAAGCACG
AAGACGAGATGGACCGGGTGCTTTGTCGGGCGCCGCAGCAAGCACGTTGG
CGGTGGCGGCATCGCGGGGCAGCAGGCGAAGGGAGGCAGGACGAGGGAAA
CAAAAGTAAAGGGGGAGATGCGCCAGGCCGATCGCACGCGGGCACCACCG
AGGCGGACATGAGAGATGGGAGAAGCATGAACGGATGGGTATACGGGAGT
AATGAGAGCGACAGGGAGAACTTGGCACAGCAGAATGAGCAAAAAATGCG
GCGATTGATGCGACGATCTGTCACTCGCGGTCTCTCTCTGATCGGTCTTT
CCTACTGGGTGAGTCCGCACACCTGGCGGCATTGGGACCAACTGGCTTTC
CAAGTGACGCACCGCTTATTTCTGGAAGAGGGGCGTTTCCGCTCCATGCG
CTTCACCCCCGTGCTGGTCGATTTGGTGTCCTGGTGGATGAATTGGCCGA
TCCTGATGCGTCGAACGGGAGGCGGCGACCTGCCTGCGCCCGCCCCGACG
TCTCCTGTTCGGCGATCTAGTCTGGGGCCGTCCGTTGCTGGGAGCCCCCC
GCGGGTTGCTTCCAACCGTCGGCACAGCAGCAGTCCAATCAAAATCTAAG
GTGAGCTATACGTTTCTCATCCTCACGTTGAAAATGTTGAACGGTTTACT
GAAGCATCACATCCCGAAATATGCAATGTCGAAAGGATGTGGTGTAATCG
GCCGGATCATAAGATTTGTACAAAGACTACACAGCACGCGATCAATTTCA
AATTGTCATGTGGATCGAACCAGCGAACAGTATTGATGCCTGTAAAGAAA
GAAGTGACTTTTTCCCCGGCGGAATGATATCACAACAGACATGTATGTTG
TCAGTGCTAGAGGACTTCGTGATATTGTATTGGATGTTAATTTTGCTCTA
TTCAAGCTATTTGCCACGATAATTGACAATCATTTTCAATTCCGCCGAAG

protein sequence of rna1057

>rna1057-protein ID=rna1057-protein|Name=rna1057|organism=Nannochloropsis gaditana|type=polypeptide|length=955bp
MEFFYPLTRHGGMPEAADGDEEPDASCGEQEKKGRLQHPQQQHPEQPGQL
SQQSFPNIFLTTAAADALRSRIRGELQNLRLWLLAHQGWKELNGKLVPRE
ETGSGLGDRKPLDLRGLYEYMRSHLELFLNFLDFFYESQGHILTPAAIQL
QKAKREAEASDPPSRTGRSEPANAAKHVQKTTHRIADEDHIETKVPAARQ
WKIKAASASVPRLAKKEETHAATAGQCRGGAKAWTPAQSVAKPDQDSQEA
LLWLDAYIPSALGVRLEDIASDSELEEYFNIVSNAWSQFYRRLIHADRRI
GQRQKIFFKYGKTAAEMVYFDTMLAFLKWLLDPVGHPKRKRDQDKAATPE
ERETLVVPAEELLERRNLILDHLHEVKAAGFSDKIREAMARRMPAPPAIR
PDRPVVEEDGKGRSTAEAEPAPHSTAPVAQPKAKKSASVRSSGTGADSTK
AGTPPSVPPGRTAKAAAVPACPARARATAKRMRPRPAAAAASSAEGAAFA
QTCLGSERFFKKRMPGSRGQAGLEAPVALLNHARNLEIPTVQEIRSIVSS
LVSSHVDEQKTLESRYDLLFPAWVDDLLAGFNLLLYGVGSKRAVLERLTE
QLRKEGTVVVVDGMDPRAGRASRLSELAAELGHGPGRGVEDVTSGGWAGV
EASWAMAMAENGTADTLDGSHLPSTKALPDAAGGPERTGSGASLPNGRNK
VPARACTLRSAQHQQGNPEVPLFFVIHNLDCRSMWPHKSGSVMVETLVEL
VSRPDVHFVASVDHLNAPLLFSTQHLEALSLVWHDVTTLAPYMTELADHT
REHRGALSLVSAGEGLKYLLQCVTRRHLELLQLLATRQLEEENEKEAQSR
VDVKRRRKEASGRGGRGQLGDGRASGEMDGGAAGAAASEGGITFEELAEQ
CAAKMISRSHGNLRQLFDELLDHRLLKSKGMGTKTRYWIPRSSAELKMIV
NYRGK

mRNA from alignment at CM002456.1:1065150..1068069-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1057 ID=rna1057|Name=rna1057|organism=Nannochloropsis gaditana|type=mRNA|length=2920bp|location=Sequence derived from alignment at CM002456.1:1065150..1068069- (Nannochloropsis gaditana)
ATGGAATTTTTTTACCCCTTAACAAGGCACGGAGGGATGCCGGAGGCTGC
CGATGGAGATGAGGAGCCTGATGCGTCGTGTGGTGAGCAAGAGAAAAAGG
GCCGACTGCAGCATCCGCAGCAACAGCATCCAGAGCAGCCGGGGCAGCTA
TCGCAACAAAGTTTCCCAAACATTTTTTTAACGACTGCAGCGGCGGACGC
TCTACGAAGTCGAATACGGGGCGAACTCCAAAATCTACGACTGTGGCTTT
TAGCCCACCAAGGATGGAAAGAGCTGAACGGAAAGCTGGTACCTCGCGAG
GAAACTGGTTCAGGACTTGGGGACAGGAAGCCACTCGATCTTCGAGGCCT
GTACGAGTACATGCGCAGTCATTTGGAGTTGTTCCTTAACTTCCTAGACT
TTTTCTACGAATCGCAAGGCCACATTCTCACCCCCGCGGCCATTCAACTC
CAGAAGGCCAAGCGGGAGGCCGAAGCGAGCGATCCCCCGTCTCGGACGGG
TCGGAGCGAACCGGCGAATGCTGCCAAGCACGTGCAAAAAACAACCCACC
GTATTGCTGACGAGGACCACATTGAGACAAAAGTACCGGCAGCAAGGCAG
TGGAAGATAAAAGCCGCATCGGCGTCGGTCCCCAGGCTAGCCAAGAAAGA
GGAAACTCACGCCGCGACAGCCGGTCAGTGTCGAGGAGGAGCGAAAGCCT
GGACTCCCGCCCAGAGCGTTGCGAAACCTGACCAGGATTCTCAAGAAGCT
TTGCTTTGGTTAGATGCTTATATTCCCAGCGCCCTGGGTGTGCGTTTGGA
AGACATTGCCTCCGACTCGGAGCTTGAAGAGTATTTCAATATTGTCTCGA
ATGCCTGGAGTCAGTTTTACCGGCGACTGATCCATGCCGACCGGCGGATA
GGCCAGCGGCAGAAGATTTTTTTTAAGTACGGGAAAACGGCGGCTGAAAT
GGTCTATTTCGATACCATGTTGGCGTTTCTGAAGTGGTTGCTGGACCCTG
TCGGCCATCCCAAGCGGAAACGCGACCAGGACAAGGCGGCGACCCCTGAA
GAGAGGGAGACGCTGGTGGTGCCGGCGGAAGAGCTTTTGGAACGGCGAAA
TTTGATATTAGATCACCTGCACGAAGTCAAAGCAGCGGGATTCAGCGACA
AGATCCGGGAGGCCATGGCGAGGAGGATGCCTGCGCCCCCTGCCATCCGA
CCCGACAGGCCCGTGGTTGAAGAGGATGGGAAGGGCCGCTCGACGGCTGA
GGCGGAACCAGCTCCTCATTCGACCGCCCCCGTTGCTCAGCCGAAAGCCA
AGAAAAGTGCCAGTGTGCGAAGCTCCGGCACGGGCGCGGACTCAACCAAA
GCAGGGACGCCTCCCTCGGTCCCTCCGGGGCGCACGGCCAAGGCGGCGGC
CGTTCCTGCTTGTCCTGCACGCGCTCGGGCCACAGCCAAACGGATGCGGC
CAAGACCAGCGGCGGCTGCGGCGTCTTCGGCGGAAGGGGCGGCCTTTGCC
CAGACTTGCTTGGGCTCTGAGCGCTTTTTCAAGAAACGTATGCCAGGGAG
TAGGGGGCAGGCGGGTTTGGAGGCCCCCGTGGCACTCCTGAACCACGCGC
GAAATTTAGAAATACCTACAGTGCAAGAGATTCGCTCGATCGTCAGCTCG
CTGGTGTCTTCACATGTGGACGAGCAGAAGACCTTGGAGAGCCGGTACGA
CCTACTGTTCCCTGCGTGGGTGGACGACTTGCTCGCTGGTTTCAATTTGC
TCTTGTACGGTGTGGGCTCGAAGCGTGCAGTGCTTGAGCGCTTAACAGAA
CAGCTTCGAAAGGAAGGTACCGTGGTGGTGGTGGATGGTATGGACCCGCG
GGCGGGCCGGGCGAGCAGATTGTCCGAGTTGGCCGCTGAGCTTGGGCACG
GTCCGGGGCGGGGAGTGGAGGATGTCACGTCGGGGGGATGGGCTGGCGTG
GAGGCCTCATGGGCGATGGCGATGGCGGAGAATGGAACGGCTGACACGCT
GGATGGTTCGCATTTGCCTTCCACCAAAGCCTTGCCCGATGCAGCTGGGG
GGCCGGAAAGGACGGGATCTGGGGCCTCACTCCCTAACGGTCGGAACAAG
GTGCCAGCCCGCGCGTGTACGTTGCGGTCAGCACAGCACCAGCAAGGCAA
CCCGGAAGTACCCTTGTTCTTCGTCATCCACAACTTGGACTGCCGGAGCA
TGTGGCCGCACAAGTCCGGGAGCGTCATGGTCGAGACGCTCGTGGAGCTG
GTGAGTCGGCCCGACGTGCATTTCGTCGCCTCGGTGGACCATCTGAACGC
ACCTTTGTTGTTTTCGACCCAGCACCTGGAGGCCCTGAGTCTGGTCTGGC
ACGACGTAACGACACTGGCGCCGTATATGACGGAGCTCGCAGACCACACG
CGGGAGCACCGCGGAGCCCTGTCCCTGGTGTCGGCGGGCGAAGGTCTCAA
ATACCTCTTGCAATGCGTGACAAGACGACATCTTGAACTCCTCCAATTAT
TGGCCACACGGCAATTGGAGGAGGAAAATGAGAAAGAGGCCCAAAGTCGC
GTAGATGTCAAGCGAAGACGCAAGGAGGCGTCTGGTAGGGGAGGGCGAGG
GCAGCTTGGTGATGGGCGTGCAAGCGGCGAGATGGACGGGGGAGCTGCAG
GAGCCGCAGCCAGCGAAGGGGGAATAACATTCGAAGAATTAGCCGAGCAG
TGCGCGGCTAAAATGATCTCACGCAGCCATGGAAATCTGCGTCAGCTCTT
CGACGAATTGCTCGACCACCGTCTCTTGAAAAGCAAAGGCATGGGTACCA
AGACTCGATACTGGATTCCACGCTCTTCGGCGGAATTGAAAATGATTGTC
AATTATCGTGGCAAATAGCTTGAATAGAGCAAAATTAACATCCAATACAA
TATCACGAAGTCCTCTAGCA

Coding sequence (CDS) from alignment at CM002456.1:1065150..1068069-

>rna1057 ID=rna1057|Name=rna1057|organism=Nannochloropsis gaditana|type=CDS|length=2868bp|location=Sequence derived from alignment at CM002456.1:1065150..1068069- (Nannochloropsis gaditana)
ATGGAATTTTTTTACCCCTTAACAAGGCACGGAGGGATGCCGGAGGCTGC
CGATGGAGATGAGGAGCCTGATGCGTCGTGTGGTGAGCAAGAGAAAAAGG
GCCGACTGCAGCATCCGCAGCAACAGCATCCAGAGCAGCCGGGGCAGCTA
TCGCAACAAAGTTTCCCAAACATTTTTTTAACGACTGCAGCGGCGGACGC
TCTACGAAGTCGAATACGGGGCGAACTCCAAAATCTACGACTGTGGCTTT
TAGCCCACCAAGGATGGAAAGAGCTGAACGGAAAGCTGGTACCTCGCGAG
GAAACTGGTTCAGGACTTGGGGACAGGAAGCCACTCGATCTTCGAGGCCT
GTACGAGTACATGCGCAGTCATTTGGAGTTGTTCCTTAACTTCCTAGACT
TTTTCTACGAATCGCAAGGCCACATTCTCACCCCCGCGGCCATTCAACTC
CAGAAGGCCAAGCGGGAGGCCGAAGCGAGCGATCCCCCGTCTCGGACGGG
TCGGAGCGAACCGGCGAATGCTGCCAAGCACGTGCAAAAAACAACCCACC
GTATTGCTGACGAGGACCACATTGAGACAAAAGTACCGGCAGCAAGGCAG
TGGAAGATAAAAGCCGCATCGGCGTCGGTCCCCAGGCTAGCCAAGAAAGA
GGAAACTCACGCCGCGACAGCCGGTCAGTGTCGAGGAGGAGCGAAAGCCT
GGACTCCCGCCCAGAGCGTTGCGAAACCTGACCAGGATTCTCAAGAAGCT
TTGCTTTGGTTAGATGCTTATATTCCCAGCGCCCTGGGTGTGCGTTTGGA
AGACATTGCCTCCGACTCGGAGCTTGAAGAGTATTTCAATATTGTCTCGA
ATGCCTGGAGTCAGTTTTACCGGCGACTGATCCATGCCGACCGGCGGATA
GGCCAGCGGCAGAAGATTTTTTTTAAGTACGGGAAAACGGCGGCTGAAAT
GGTCTATTTCGATACCATGTTGGCGTTTCTGAAGTGGTTGCTGGACCCTG
TCGGCCATCCCAAGCGGAAACGCGACCAGGACAAGGCGGCGACCCCTGAA
GAGAGGGAGACGCTGGTGGTGCCGGCGGAAGAGCTTTTGGAACGGCGAAA
TTTGATATTAGATCACCTGCACGAAGTCAAAGCAGCGGGATTCAGCGACA
AGATCCGGGAGGCCATGGCGAGGAGGATGCCTGCGCCCCCTGCCATCCGA
CCCGACAGGCCCGTGGTTGAAGAGGATGGGAAGGGCCGCTCGACGGCTGA
GGCGGAACCAGCTCCTCATTCGACCGCCCCCGTTGCTCAGCCGAAAGCCA
AGAAAAGTGCCAGTGTGCGAAGCTCCGGCACGGGCGCGGACTCAACCAAA
GCAGGGACGCCTCCCTCGGTCCCTCCGGGGCGCACGGCCAAGGCGGCGGC
CGTTCCTGCTTGTCCTGCACGCGCTCGGGCCACAGCCAAACGGATGCGGC
CAAGACCAGCGGCGGCTGCGGCGTCTTCGGCGGAAGGGGCGGCCTTTGCC
CAGACTTGCTTGGGCTCTGAGCGCTTTTTCAAGAAACGTATGCCAGGGAG
TAGGGGGCAGGCGGGTTTGGAGGCCCCCGTGGCACTCCTGAACCACGCGC
GAAATTTAGAAATACCTACAGTGCAAGAGATTCGCTCGATCGTCAGCTCG
CTGGTGTCTTCACATGTGGACGAGCAGAAGACCTTGGAGAGCCGGTACGA
CCTACTGTTCCCTGCGTGGGTGGACGACTTGCTCGCTGGTTTCAATTTGC
TCTTGTACGGTGTGGGCTCGAAGCGTGCAGTGCTTGAGCGCTTAACAGAA
CAGCTTCGAAAGGAAGGTACCGTGGTGGTGGTGGATGGTATGGACCCGCG
GGCGGGCCGGGCGAGCAGATTGTCCGAGTTGGCCGCTGAGCTTGGGCACG
GTCCGGGGCGGGGAGTGGAGGATGTCACGTCGGGGGGATGGGCTGGCGTG
GAGGCCTCATGGGCGATGGCGATGGCGGAGAATGGAACGGCTGACACGCT
GGATGGTTCGCATTTGCCTTCCACCAAAGCCTTGCCCGATGCAGCTGGGG
GGCCGGAAAGGACGGGATCTGGGGCCTCACTCCCTAACGGTCGGAACAAG
GTGCCAGCCCGCGCGTGTACGTTGCGGTCAGCACAGCACCAGCAAGGCAA
CCCGGAAGTACCCTTGTTCTTCGTCATCCACAACTTGGACTGCCGGAGCA
TGTGGCCGCACAAGTCCGGGAGCGTCATGGTCGAGACGCTCGTGGAGCTG
GTGAGTCGGCCCGACGTGCATTTCGTCGCCTCGGTGGACCATCTGAACGC
ACCTTTGTTGTTTTCGACCCAGCACCTGGAGGCCCTGAGTCTGGTCTGGC
ACGACGTAACGACACTGGCGCCGTATATGACGGAGCTCGCAGACCACACG
CGGGAGCACCGCGGAGCCCTGTCCCTGGTGTCGGCGGGCGAAGGTCTCAA
ATACCTCTTGCAATGCGTGACAAGACGACATCTTGAACTCCTCCAATTAT
TGGCCACACGGCAATTGGAGGAGGAAAATGAGAAAGAGGCCCAAAGTCGC
GTAGATGTCAAGCGAAGACGCAAGGAGGCGTCTGGTAGGGGAGGGCGAGG
GCAGCTTGGTGATGGGCGTGCAAGCGGCGAGATGGACGGGGGAGCTGCAG
GAGCCGCAGCCAGCGAAGGGGGAATAACATTCGAAGAATTAGCCGAGCAG
TGCGCGGCTAAAATGATCTCACGCAGCCATGGAAATCTGCGTCAGCTCTT
CGACGAATTGCTCGACCACCGTCTCTTGAAAAGCAAAGGCATGGGTACCA
AGACTCGATACTGGATTCCACGCTCTTCGGCGGAATTGAAAATGATTGTC
AATTATCGTGGCAAATAG

Synonyms

Publications