rna1037, rna1037 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1037
Unique Name	rna1037
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2883
Alignment location	CM002456.1:1017485..1019023 +

Link to JBrowse

Properties


Property Name	Value
Product	sporangia induced sperm flagellar protein
Orig transcript id	gnl\|cribi\|Naga_100050g22.6862.mrna
Orig protein id	gnl\|cribi\|Naga_100050g22.6862
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1017485..1019023 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100050g22	gene999	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1037	rna1037-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29639.1	cds1036	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1017485..1019023+
coding sequence from alignment at CM002456.1:1017485..1019023+

mRNA sequence

>rna1037 ID=rna1037|Name=rna1037|organism=Nannochloropsis gaditana|type=mRNA|length=2883bp
CACACCGCCACAGGAGCATGGCAACGGTCAAAACCGATGCATGCATCATT
TTACTTGCTTTTCTTTGTCCCTACGTCGTCCGATCGTTTCCTGGGTCGCA
GCCACAGCCGCCGCGCTCCACAACCTCCATCCCGACCTCCCCTTTCGCTC
CCACCAAACCAAGCTGCGCACCTCTTCCTCCTCACGAAAGCATTTTTAAT
AGCGACCTGTCGCCGACTTCAAAGCTGCCAGGCAACTTTGATTTGGACAC
GTGGGCATCGCTTTTTGCATCTTTGGACGAGGATGAGGCCGTGGACTATT
GGATAGAAGACTGGGAGGGGGTTATTCCCGAAGATCTACATGGAACTTTC
TTGACTGTCGGGCCCAGCAAATATGAGCGTGGCGGTGTCCCAATAAAATG
CTGGTTGGAGGGTGACGGAGCCATGACGGCTATCTCCTTCAACAAGGGGA
AGGTGCATGTGAAGGCACGGTTCATTGAGACGAAAGCCTACTTGGAAGAA
AAAGTTGAAGACCGTTTCCTTTATCGAGGACAATTCGGGACAATGAAGAC
AGGTCGACATGGCTGGAGCGCATTCAAAGACAGTTTTTTAAAAATTCGAC
TTCCCCCGATAAATGCATTCGACATGAAGTTCAAGAATCCGAGTAACACC
AAGCCTCTCTACTGGGGTGGTAGGCTCTTGTCCACTTTCGAGACTGCCCT
GCCTCACGAATTGGACACCCAGACATTGGAGACAAAGGGTGAATTTGACT
TTGGTGGACTAATGAGGCCAGGAGAGGCCATCACATCCGCAGATCCCGTG
CTGGACGCCATACTGCAGAAGAAAAGTGGACATGCTTTTACGGCCCATCC
TCGTATCGACAAGGCCACGAAGCGCCTACTAGGGTGGAGCTGGAAGACCT
TACTCCCAAAGCATTTTGGTGTACCTGATCCTCGTCTGTGGCGGAGCGCC
AAAGGGAAAAAAAGCAGGACGGAAAGCCGTGGTGCCGGTCTGGAAGTGAC
ATTCTATGAGTGGGATGAGGCCTTTGACCTGCCCTTTCCCCCCGTGACCA
TACGCGTTTCCGATTGTCCATCTCCACCACACGACTGGGTGGTCACACCT
AATTACTACGTGTGGATGCAGTCCGCTTTTCGCTTGAACTTGCTGCCCTG
CGTCTTGGGTTTGAAAGGGCCCGGCGAGTGCATGGTCCCCGTCAAGGGAG
AAGAGGCACGGGCCGTGGTCCATTTGGTGCCTCGTCCGGGGGGGAGGCAC
GCTGGAAAGCCGCCTGTGGCTATCGAAATGGAGCCCTACTTTATGACTCA
CTGGAGTCACGCCTTCGATGTGGAAGGGGATGGGGAAGAAGGAAACAAAG
TGGTGGGTTTCGCAGCTGGCTGGGACAAGTCTTTGTTCTCGCCTGCCAAC
GACGACGGCCACATGTTCGGGCACACCTACCGCGGCGCCCCTGACTTCTC
CCGTCTACCTATCATCCGCTACTACCGCCTGGACGTGGACTTGGAGCGAA
AGAGAGCCTCATTCGTGGCGGTGCCATCCTTAGCCAAGACTTTCCTTGAC
TTCCCCAAAGTGCACCCCCGGTTCGAGGCGGAAGGGGCTCCGCGACACGT
GTGGGCTATGGCGTGCAATGACCGCGGAGTCTCGTCGCCGCCGCAAGGAT
ACGTCCACCTGGATCTGGGCACGGGCTTGGTGGAAAGCTGGCACGCGCCT
TCCTCTGCAGCGGCATTGGCAGCAGCGCGACAAGCACCTTCTTCCTCCCT
GCCCTCGATGTTCGCGTCGCCCCCTCTTTCTTTGAGCGCGGTGGACATGA
ATAGGGACGACACTGGTGGTGAGTTGAGCGTTGAGGACAGGACGAAGCAC
ATTGTGGTGGGTGAGGGAGTACTGGCGCCGCGGGCAGCATGCGAGCCAGG
GAAGGGGGATGAGCAGGAAGAGCTCGACTCCTATTGGATGGGGGTCGAGT
TCAATGCTCTGACGGGCCGACGCTCTCTGTGTATCTTCAACGCGGCGGAC
ATTGCTGCAGGGCCGCTATGCAAGCTCCATTTGCAGCATTCTCTGCCTTG
GGGCATTCACAGTGAGTGGGCTCCGGGCTTGCTGGTAGCAGTGCCGGAGG
AGCGTGAGCAGACAGGAAATGTGATACGCAATAAGGACGGCCAGAAAGAG
GTGGAGGGCAAAGAATTCTCGAAAGGCGTCGCAAAATAGGAAGTTTCAGG
TTTGAAGCAAGCGATGTCCAGGCAAATTATCGAGTGATCCATCCTCTCCG
GCATCGCTGCGCTTCAACCATGTACAAGCTAATGTAGAGCCCAACAGTCG
TTTTTCTCTTCTAATTTCAAATGAGTGTGCAGCGCAGAGAAGTTGAGACC
ATCAAAGTGGTGGGACAGATACACGTGTACAATTTTTTTTTATCCCGTAC
GTAGTGCAGGGCACACGATCCTCCGGCCGGCGGACCTGATCCGCAATGTG
ATATTAGTTCGCGATTTTTTAGTAATTTTTGCAAGGACAAAGCAGGGCTG
GTTGACTCCTCCATAGACGTTTGGCGTACGACGTTCGATTAGCTTATGAG
CATCGCCCACTTCTGTCTGTGGCAGACATCGGTTGTAGATACACACACGA
TGCGATGCACGACACTGGCCGGGAGTATCTCTGTTTGTCTTGAATATCTT
CTCTTTCCTTTTTTCCATTTCTAGTGTGCAGCGTACACGAAAAGTCTTAA
GATTACAAGCAATTAAAGCGAAAGCAACCTTTTCCGCGCACGCTGAGAAG
GGTAGTCTTGCTAAAAATGACGAGATTCTTTGTCATTTATCGCACTATAC
TGTCAACGTGTATACATTACATCTTCACACAAACATAGCCTCTACACAGA
AGCAGGCGCCGTTGGCCGAGGGGCAGCAGCAGC

protein sequence of rna1037

>rna1037-protein ID=rna1037-protein|Name=rna1037|organism=Nannochloropsis gaditana|type=polypeptide|length=334bp
MSNMNDEELQKLFMWVDTIPLSRSKKNINRDFSDAVLAAEVIGHYFPRLV
DMHNYPATSNSGQKLANWRALNVKVLKKLKYQQAPPMLEDLAHAKTGAVE
VFLHALQYKLAKYKADKSGPTASHTTEGEAQSVSIEQLSIHGGRSPTAPA
LTGAGQACKSFAAIPVSSSSSPSPATSPARQHVLSEPSHSTSVFSLSLPG
EAGAANSLISRGENSGKRHPRAEEQPSVDEEIMMEKEETLEELRQTVDML
QLKVTKLEQLLRVKEMKIDTLGREVARLSLTGKPDPDGATGGGFIGDGSF
SPARSTYSVDDAGERSGKAAEKPLTLPSYARVGV

mRNA from alignment at CM002456.1:1017485..1019023+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1037 ID=rna1037|Name=rna1037|organism=Nannochloropsis gaditana|type=mRNA|length=1539bp|location=Sequence derived from alignment at CM002456.1:1017485..1019023+ (Nannochloropsis gaditana)
CCACCCTCATTCGTTCCTTGCCCCGTTCCATGCTTTGACACAGCTGCACG
ACTATTTTCTATCGACATCGCCAAGAAAGATCCTATTCCTTCGCACCGCG
TGGTTGACGCCAGCACTTTGCCACCCAAACCTGTGAATCAATATCAAAat
tgctctcccccccccaaagtaCGATGAGTAACATGAACGATGAAGAGCTA
CAAAAACTCTTCATGTGGGTAGATACGATTCCTCTGAGTCGGTCTAAAAA
AAATATCAACCGGGATTTTAGTGACGCGGTGCTGGCCGCGGAGGTGATCG
GCCACTACTTTCCCCGCCTCGTTGACATGCACAACTATCCTGCAACTTCT
AACTCTGGACAAAAGCTGGCCAATTGGCGAGCCCTGAACGTAAAGGTTTT
AAAAAAACTAAAGTATCAGCAGGCGCCTCCTATGTTGGAAGACTTGGCAC
ACGCAAAGACTGGAGCTGTCGAGGTCTTCTTGCACGCGCTGCAATACAAG
CTCGCAAAGTACAAGGCCGACAAGAGCGGACCCACCGCGTCTCACACGAC
AGAGGGTGAAGCTCAATCGGTGTCAATCGAGCAGCTCTCCATTCATGGAG
GGCGCTCACCCACAGCTCCTGCTCTGACAGGGGCTGGTCAAGCGTGCAAA
AGCTTCGCTGCAATACCTGTctcctcatcgtcttctCCAAGCCCCGCGAC
CTCTCCTGCCCGCCAGCACGTCCTTTCAGAGCCATCGCATTCCACCTCTG
TTTTCTCGCTGTCCCTTCCCGGTgaggcaggagcagcaaATAGCTTGATA
AGTCGGGGCGAGAACAGCGGCAAAAGGCATCcacgggcggaggagcagcc
gtcagtggacgaagagatcatgatggagaaggaggagaccctggaggagc
ttcGGCAGGTAAGCCTCTTCTGTTTCACTCCGGAGTACATGTTCGCAGTC
ACTCCGGTTTTCAATGTCTGGGTATACGGAGCATCTTCGGATGCTCCCTC
GTGATCCTCAGCTGACGCAATATTAACAAAttcctttcaatttttcccAC
TTTCTTCATCCCTACAGACCGTGGACATGCTCCAACTAAAAGTGACAAAA
CTCGAGCAACTCCTACGtgtgaaggagatgaagatCGACACGTTGGGCCG
CGAAGTCGCTCGTCTCAGTCTCACCGGAAAACCAGATCCAGATGGTGCCA
CTGGCGGAGGGTTCATTGGAGATGGTTCATTCAGCCCCGCCAGGAGCACT
TACAGCGTCGATGATGCTGGAGAGAGAAGCGGAAAGGCGGCCGAGAAGCC
CCTCACGCTTCCCTCGTATGCACGCGTGGGTGTTTAGAGCGGAAGACGAC
GCCTTGGAAATGGTGAATGACGGAGCAGTAGGAGCAATAGCTGAGTTTGT
ACATGTAAACTTCACAAAACTCAAGAGGAAGCATGCGCGAGGATAATCTG
CTTCATGTATGGTTAAGGCGCAAAAGTAACTAAGAGCAAGCGTTTGATCT
CCGCGCTAACAAGGCTACGCCATTCAGTGAGAACTATCG

Coding sequence (CDS) from alignment at CM002456.1:1017485..1019023+

>rna1037 ID=rna1037|Name=rna1037|organism=Nannochloropsis gaditana|type=CDS|length=2010bp|location=Sequence derived from alignment at CM002456.1:1017485..1019023+ (Nannochloropsis gaditana)
ATGAGTAACATGAACGATGAAGAGCTACAAAAACTCTTCATGTGGGTAGA
TACGATTCCTCTGAGTCGGTCTAAAAAAAATATCAACCGGGATTTTAGTG
ACGCGGTGCTGGCCGCGGAGGTGATCGGCCACTACTTTCCCCGCCTCGTT
GACATGCACAACTATCCTGCAACTTCTAACTCTGGACAAAAGCTGGCCAA
TTGGCGAGCCCTGAACGTAAAGGTTTTAAAAAAACTAAAGTATCAGCAGG
CGCCTCCTATGTTGGAAGACTTGGCACACGCAAAGACTGGAGCTGTCGAG
GTCTTCTTGCACGCGCTGCAATACAAGCTCGCAAAGTACAAGGCCGACAA
GAGCGGACCCACCGCGTCTCACACGACAGAGGGTGAAGCTCAATCGGTGT
CAATCGAGCAGCTCTCCATTCATGGAGGGCGCTCACCCACAGCTCCTGCT
CTGACAGGGGCTGGTCAAGCGTGCAAAAGCTTCGCTGCAATACCTGTctc
ctcatcgtcttctCCAAGCCCCGCGACCTCTCCTGCCCGCCAGCACGTCC
TTTCAGAGCCATCGCATTCCACCTCTGTTTTCTCGCTGTCCCTTCCCGGT
gaggcaggagcagcaaATAGCTTGATAAGTCGGGGCGAGAACAGCGGCAA
AAGGCATCcacgggcggaggagcagccgtcagtggacgaagagatcatga
tggagaaggaggagaccctggaggagcttcGGCAGACCGTGGACATGCTC
CAACTAAAAGTGACAAAACTCGAGCAACTCCTACGtgtgaaggagatgaa
gatCGACACGTTGGGCCGCGAAGTCGCTCGTCTCAGTCTCACCGGAAAAC
CAGATCCAGATGGTGCCACTGGCGGAGGGTTCATTGGAGATGGTTCATTC
AGCCCCGCCAGGAGCACTTACAGCGTCGATGATGCTGGAGAGAGAAGCGG
AAAGGCGGCCGAGAAGCCCCTCACGCTTCCCTCGTATGCACGCGTGGGTG
TTTAGATGAGTAACATGAACGATGAAGAGCTACAAAAACTCTTCATGTGG
GTAGATACGATTCCTCTGAGTCGGTCTAAAAAAAATATCAACCGGGATTT
TAGTGACGCGGTGCTGGCCGCGGAGGTGATCGGCCACTACTTTCCCCGCC
TCGTTGACATGCACAACTATCCTGCAACTTCTAACTCTGGACAAAAGCTG
GCCAATTGGCGAGCCCTGAACGTAAAGGTTTTAAAAAAACTAAAGTATCA
GCAGGCGCCTCCTATGTTGGAAGACTTGGCACACGCAAAGACTGGAGCTG
TCGAGGTCTTCTTGCACGCGCTGCAATACAAGCTCGCAAAGTACAAGGCC
GACAAGAGCGGACCCACCGCGTCTCACACGACAGAGGGTGAAGCTCAATC
GGTGTCAATCGAGCAGCTCTCCATTCATGGAGGGCGCTCACCCACAGCTC
CTGCTCTGACAGGGGCTGGTCAAGCGTGCAAAAGCTTCGCTGCAATACCT
GTctcctcatcgtcttctCCAAGCCCCGCGACCTCTCCTGCCCGCCAGCA
CGTCCTTTCAGAGCCATCGCATTCCACCTCTGTTTTCTCGCTGTCCCTTC
CCGGTgaggcaggagcagcaaATAGCTTGATAAGTCGGGGCGAGAACAGC
GGCAAAAGGCATCcacgggcggaggagcagccgtcagtggacgaagagat
catgatggagaaggaggagaccctggaggagcttcGGCAGACCGTGGACA
TGCTCCAACTAAAAGTGACAAAACTCGAGCAACTCCTACGtgtgaaggag
atgaagatCGACACGTTGGGCCGCGAAGTCGCTCGTCTCAGTCTCACCGG
AAAACCAGATCCAGATGGTGCCACTGGCGGAGGGTTCATTGGAGATGGTT
CATTCAGCCCCGCCAGGAGCACTTACAGCGTCGATGATGCTGGAGAGAGA
AGCGGAAAGGCGGCCGAGAAGCCCCTCACGCTTCCCTCGTATGCACGCGT
GGGTGTTTAG

Synonyms

Publications