rna975, rna975 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna975
Unique Name	rna975
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1447
Alignment location	CM002456.1:871099..873244 -

Link to JBrowse

Properties


Property Name	Value
Product	alpha beta hydrolase fold-3 domain protein
Orig transcript id	gnl\|cribi\|Naga_100114g17.2482.mrna
Orig protein id	gnl\|cribi\|Naga_100114g17.2482
Gene	lip9B
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:871099..873244 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
lip9B	gene938	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna975	rna975-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29697.1	cds974	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:871099..873244-
coding sequence from alignment at CM002456.1:871099..873244-

mRNA sequence

>rna975 ID=rna975|Name=rna975|organism=Nannochloropsis gaditana|type=mRNA|length=1447bp
ACAACAGTTGTAAGATCATTTGTTACGCTGCCACTCTGCATGTTTCGGCC
ACATCATGCATTGAGCGGGCATAAAATCCAGAGGCCTTGCTGGCAGGGTG
GCCGCATATATGGGCCCTCCTTCAACAAGAATTAAGTGGGTTGCTTCTTC
CGCATGCACACGGCAACTTTTCCAACTAAATTATTTGAAAGTTCGACCAC
AGACGTATTTGAATACTTAATGGGTTCAAGGAACCAGTCGCAAATGCAAC
ACTTGCAGCAATATGTCAACTCATTCCTTGAGGACGAGCCAACAAACCGG
GAAGATGTTGCCGGGACTACAGACAAATTATGCCTGCGACGGGGATACTG
GCTGGACACTCCCAAAGAAGAAGCATTTTTACGCAAAGCTCTTGTTAATT
TCGAAAATTTCCACCGAGGCTTGGAAGGGAAGACATATTTCCAACCAAAT
TCTTCTATACCGCGAGTCTTTCACCACATATGGCTTGGCTCCCCGCTGCC
CGAGCGATTTCAAGCTTTACGCGCAACATGGCTTCGACATCACCCAGAGG
AAGACGGTAGGTATTAAAGGGGATGTCCCTTCTGTCTTGGACTTGATGTC
ATTTTTTTCCTTCCCGCAAGGTTGGACGCACCGGCTGTGGACAGACGCAG
ACGTGGACTCTATCTGCCTTCGTAACCAGCATGCATACTCGGCGGCTCCA
AACTACGGACAGAAATCCGACATACTAAGGTACGAGCTTCTGGAGAGACA
CGGAGGCGTCTATGTGGATGTGGATATGGAGTGCGTGCGACCGCTGGACG
ATCTTCACGGGCAACGAGGGCCGTCGTTCTATGCGGGCTTCTCGAACACG
GGCACTGTGGAGCTCAACAACGGGATTATCGGGTGCGTTGCCTCATAGAT
TCATGTGGCACCGACGGTACACTCATGACTGCTTTATTGGTCCCTCCTCC
CCTCGCGCCTTCGTAGCTCGATCCCAGGGCACCCCATCTTGAGACAGCTG
ATCGACCGCATCAAGCGAGAGCAGTCGAAGCCCCTGTCGGCGCGGCACCA
TCCCACGCGCGCGCAGGGCAGCAGCCTGGCCACAATCTTGAGCTTTTTGG
GACGAAGCGACGCTGTGGCAGCCGAGCATGCGGTGGCACGAGCGGCACGG
GAGCTGGAGGCGTTCGTCACGATCGAGGCCACGGGTCCGGGGCTCTTCAC
ACGGGGGGTGGCGGCCTTGGTGCTGCAGCAGGGTCAGGTGGACGAGGTGG
GCATCGTCCTGCTGGCCCCGCCTGTCTGGTTTTACCCCATTCCCAACCGA
CCGGTCGCCACTCCCAGCCCGCCTGCTGCCGGCGCGGTGCCGGAAGTGGC
GTACGCCGTGCATCACTGGGCCCGGTCCTGGCAGACCCGAGGGTGACAGC
GCCCAGACACTTGCCCACACCGTGAAAGAAACACTTTCCCGAGCTGA

protein sequence of rna975

>rna975-protein ID=rna975-protein|Name=rna975|organism=Nannochloropsis gaditana|type=polypeptide|length=513bp
MKRMGGRGWEEEGSSKSPNPNPPSGVAAPHKAKDAMREKGEVAAGVGEGA
PSPDASIRTSCPKSPIFGARRSRLLSLEWEDGEGSTEDEVIGVQSGSCNT
PLYSPPFSAKVVLSPAQQRRLMWTPERTPRSRKAHRQRRRYHELHVSRRP
WAMFWAVLLLSLLLALPLLHAWRRLWSSHRIGIQAAFVCVVSHFFPLVDH
SDDFADLERLAWSRRRLDLANHLNMAPTIAGTEDILVPSSKGDHDIPVRL
FRPLVAADASKRNSSSGSMSKLLVWIHGGGWTIGSIASDDKIARRLASAT
GAVVASVEYRLAPEFKYPAQVDDTMDALEFLLERGQDFGLDTRKVAVAGE
SAGGHLTIASAMALGAAKTRLCGILPVVPATDYGCESASCERFHEGFLLT
QKQVRAFWNAKLSNPTEEQDHFLVSPLRAPQEVFENMPPMLVMTAGLDPL
RDEGEAFADRARKAGAVVDLVRFENTIHGFFGRMVTGGASGVALAATWLE
RTCDWGADDEEAL

mRNA from alignment at CM002456.1:871099..873244-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna975 ID=rna975|Name=rna975|organism=Nannochloropsis gaditana|type=mRNA|length=2146bp|location=Sequence derived from alignment at CM002456.1:871099..873244- (Nannochloropsis gaditana)
AACTGTTCCAACTTCACGCCTCGTGCTTCGCCCGTGCTCGACATCCCTCG
GCAGAATTCCTGCCAATCTTTTAATTGACAAAATCACATGGTCTTTGGTT
AAATATTCACTCTGCGATCGTGTGACTGACCGAAGACATCGTTTCTGGTT
TGCAGGGCGGTCCAAGCCCGTCAGAGGACTGCGCGCTGTTCTTCACTGAT
AGCCCCCTCTCTTCAGCTTGCGCCGGAGCCACAGTGGACCAGTCAATCAG
TCAAACAAGGCATGAAACGTATGGGCGGACGGGGATGGGAAGAAGAAGGC
TCGAGCAAATCCCCAAATCCAAATCCCCCCTCTGGGGTCGCTGCGCCACA
TAAAGCAAAGGATGCCATGAGGGAAAAAGGGGAGGTCGCCGCAGGGGTGG
GTGAGGGGGCGCCAAGCCCCGACGCTTCGATACGGACATCTTGTCCCAAA
TCTCCTATCTTCGGGGCCCGTCGTTCCCGCCTGCTCAGCTTGGAGTGGGA
AGATGGGGAGGGGAGTACGGAGGACGAGGTTATCGGCGTCCAAAGTGGCT
CTTGCAATACCCCGCTTTATTCGCCACCGTTCTCGGCTAAAGTGGTGCTG
TCCCCTGCACAACAGCGTCGACTCATGTGGACGCCTGAGCGCACCCCGCG
AAGCCGAAAGGCTCACCGTCAAAGGCGACGCTACCATGAGCTTCACGTTA
GCCGGCGGCCGTGGGCTATGTTCTGGGCAGTCCTGCTTCTTTCTTTGCTC
TTGGCCTTGCCACTGTTGCACGCTTGGCGGCGACTCTGGTCATCTCACCG
AATAGGCATACAGGCTGCATTTGTGTGCGTAGTTAGTCATTTCTTCCCCT
TAGTCGACCACTCGGATGACTTCGCGGACCTCGAGCGCCTCGCCTGGAGC
CGCCGCCGTCTCGACCTCGCCAACCACCTGAACATGGCACCAACCATCGC
TGGCACGGAAGACATTCTTGTACCCTCCAGCAAAGGAGATCATGACATCC
CTGTCCGACTCTTCCGCCCCTTGGTCGCTGCCGACGCAAGTAAACGAAAT
AGCTCAAGCGGCTCTATGTCCAAGCTCCTTGTCTGGATCCACGGGGGAGG
GTGGACCATTGGCAGCATCGCTTCGGATGACAAGATCGCACGGCGTCTTG
CATCGGTCAGTACCTATCGGGCGACTCCTATTATGGGAAGTAGGAATGTG
GGAGGCGCGCCGCCTGCGACGAAGGACTTTTCCTCCCCTCGCCCTCTCCC
CGATATTTGTGTCCTTCTCACCTTGTGAACTTGCTGCCGCCTAGAAGCAA
AGCAGTACAGCTAATAAAACTCTTAACTTACCTGCACAGGCGACTGGAGC
AGTTGTTGCAAGCGTCGAATACCGACTGGCTCCGGAGTTCAAGTATCCGG
CGCAGGTGGATGACACGATGGATGCTCTGGAATTTTTGCTGGAGCGCGGC
CAAGACTTCGGCTTGGATACAAGAAAAGTAGCAGTTGCGGGAGAGAGCGC
TGGCGGACATCTGACCATAGCCTCGGCTATGGCCCTTGGGGCCGCCAAGA
CGCGTCTCTGCGGGATTTTGCCTGTTGTTCCCGCGACGGACTACGGGTGC
GAAAGCGCATCTTGTGAACGTTTTCACGAAGGATTCCTTCTGACGCAAAA
GCAGGTTAGGGCCTTTTGGAATGCTAAGCTTTCAAATCCGACGGAGGAAC
AGGACCATTTTCTAGTATCACCGTTGCGAGCGCCGCAAGAAGTCTTTGAG
AATATGCCTCCCATGCTTGTCATGACTGCAGGTCTCGACCCGCTCAGGGA
CGAGGGCGAAGCATTTGCTGATCGAGCTCGCAAGGCAGGGGCAGTGGTCG
ACCTTGTACGCTTTGAAAACACAATACACGGTTTTTTTGGTCGCATGGTG
ACTGGCGGCGCCAGCGGTGTCGCACTGGCAGCGACATGGTTGGAGCGCAC
ATGCGACTGGGGGGCGGATGATGAAGAGGCATTGTAAATTAAAGCTCAAG
GTCTTCAGGAAGGAATTTAAAATTGAGATATTCAGAGGTACATAGGTAGA
GAATTGTAAAACAGATATGACAAACATGTTTTACTTCGGTTTTTTAGATC
AAATAGGTTTGAAAGGAAAGAAGAAGCCACAAATTGTGCAGAGAAA

Coding sequence (CDS) from alignment at CM002456.1:871099..873244-

>rna975 ID=rna975|Name=rna975|organism=Nannochloropsis gaditana|type=CDS|length=3084bp|location=Sequence derived from alignment at CM002456.1:871099..873244- (Nannochloropsis gaditana)
GCGACTGGAGCAGTTGTTGCAAGCGTCGAATACCGACTGGCTCCGGAGTT
CAAGTATCCGGCGCAGGTGGATGACACGATGGATGCTCTGGAATTTTTGC
TGGAGCGCGGCCAAGACTTCGGCTTGGATACAAGAAAAGTAGCAGTTGCG
GGAGAGAGCGCTGGCGGACATCTGACCATAGCCTCGGCTATGGCCCTTGG
GGCCGCCAAGACGCGTCTCTGCGGGATTTTGCCTGTTGTTCCCGCGACGG
ACTACGGGTGCGAAAGCGCATCTTGTGAACGTTTTCACGAAGGATTCCTT
CTGACGCAAAAGCAGGTTAGGGCCTTTTGGAATGCTAAGCTTTCAAATCC
GACGGAGGAACAGGACCATTTTCTAGTATCACCGTTGCGAGCGCCGCAAG
AAGTCTTTGAGAATATGCCTCCCATGCTTGTCATGACTGCAGGTCTCGAC
CCGCTCAGGGACGAGGGCGAAGCATTTGCTGATCGAGCTCGCAAGGCAGG
GGCAGTGGTCGACCTTGTACGCTTTGAAAACACAATACACGGTTTTTTTG
GTCGCATGGTGACTGGCGGCGCCAGCGGTGTCGCACTGGCAGCGACATGG
TTGGAGCGCACATGCGACTGGGGGGCGGATGATGAAGAGGCATTGTAAAT
GAAACGTATGGGCGGACGGGGATGGGAAGAAGAAGGCTCGAGCAAATCCC
CAAATCCAAATCCCCCCTCTGGGGTCGCTGCGCCACATAAAGCAAAGGAT
GCCATGAGGGAAAAAGGGGAGGTCGCCGCAGGGGTGGGTGAGGGGGCGCC
AAGCCCCGACGCTTCGATACGGACATCTTGTCCCAAATCTCCTATCTTCG
GGGCCCGTCGTTCCCGCCTGCTCAGCTTGGAGTGGGAAGATGGGGAGGGG
AGTACGGAGGACGAGGTTATCGGCGTCCAAAGTGGCTCTTGCAATACCCC
GCTTTATTCGCCACCGTTCTCGGCTAAAGTGGTGCTGTCCCCTGCACAAC
AGCGTCGACTCATGTGGACGCCTGAGCGCACCCCGCGAAGCCGAAAGGCT
CACCGTCAAAGGCGACGCTACCATGAGCTTCACGTTAGCCGGCGGCCGTG
GGCTATGTTCTGGGCAGTCCTGCTTCTTTCTTTGCTCTTGGCCTTGCCAC
TGTTGCACGCTTGGCGGCGACTCTGGTCATCTCACCGAATAGGCATACAG
GCTGCATTTGTGTGCGTAGTTAGTCATTTCTTCCCCTTAGTCGACCACTC
GGATGACTTCGCGGACCTCGAGCGCCTCGCCTGGAGCCGCCGCCGTCTCG
ACCTCGCCAACCACCTGAACATGGCACCAACCATCGCTGGCACGGAAGAC
ATTCTTGTACCCTCCAGCAAAGGAGATCATGACATCCCTGTCCGACTCTT
CCGCCCCTTGGTCGCTGCCGACGCAAGTAAACGAAATAGCTCAAGCGGCT
CTATGTCCAAGCTCCTTGTCTGGATCCACGGGGGAGGGTGGACCATTGGC
AGCATCGCTTCGGATGACAAGATCGCACGGCGTCTTGCATCGGCGACTGG
AGCAGTTGTTGCAAGCGTCGAATACCGACTGGCTCCGGAGTTCAAGTATC
CGGCGCAGGTGGATGACACGATGGATGCTCTGGAATTTTTGCTGGAGCGC
GGCCAAGACTTCGGCTTGGATACAAGAAAAGTAGCAGTTGCGGGAGAGAG
CGCTGGCGGACATCTGACCATAGCCTCGGCTATGGCCCTTGGGGCCGCCA
AGACGCGTCTCTGCGGGATTTTGCCTGTTGTTCCCGCGACGGACTACGGG
TGCGAAAGCGCATCTTGTGAACGTTTTCACGAAGGATTCCTTCTGACGCA
AAAGCAGGTTAGGGCCTTTTGGAATGCTAAGCTTTCAAATCCGACGGAGG
AACAGGACCATTTTCTAGTATCACCGTTGCGAGCGCCGCAAGAAGTCTTT
GAGAATATGCCTCCCATGCTTGTCATGACTGCAGGTCTCGACCCGCTCAG
GGACGAGGGCGAAGCATTTGCTGATCGAGCTCGCAAGGCAGGGGCAGTGG
TCGACCTTGTACGCTTTGAAAACACAATACACGGTTTTTTTGGTCGCATG
GTGACTGGCGGCGCCAGCGGTGTCGCACTGGCAGCGACATGGTTGGAGCG
CACATGCGACTGGGGGGCGGATGATGAAGAGGCATTGTAAATGAAACGTA
TGGGCGGACGGGGATGGGAAGAAGAAGGCTCGAGCAAATCCCCAAATCCA
AATCCCCCCTCTGGGGTCGCTGCGCCACATAAAGCAAAGGATGCCATGAG
GGAAAAAGGGGAGGTCGCCGCAGGGGTGGGTGAGGGGGCGCCAAGCCCCG
ACGCTTCGATACGGACATCTTGTCCCAAATCTCCTATCTTCGGGGCCCGT
CGTTCCCGCCTGCTCAGCTTGGAGTGGGAAGATGGGGAGGGGAGTACGGA
GGACGAGGTTATCGGCGTCCAAAGTGGCTCTTGCAATACCCCGCTTTATT
CGCCACCGTTCTCGGCTAAAGTGGTGCTGTCCCCTGCACAACAGCGTCGA
CTCATGTGGACGCCTGAGCGCACCCCGCGAAGCCGAAAGGCTCACCGTCA
AAGGCGACGCTACCATGAGCTTCACGTTAGCCGGCGGCCGTGGGCTATGT
TCTGGGCAGTCCTGCTTCTTTCTTTGCTCTTGGCCTTGCCACTGTTGCAC
GCTTGGCGGCGACTCTGGTCATCTCACCGAATAGGCATACAGGCTGCATT
TGTGTGCGTAGTTAGTCATTTCTTCCCCTTAGTCGACCACTCGGATGACT
TCGCGGACCTCGAGCGCCTCGCCTGGAGCCGCCGCCGTCTCGACCTCGCC
AACCACCTGAACATGGCACCAACCATCGCTGGCACGGAAGACATTCTTGT
ACCCTCCAGCAAAGGAGATCATGACATCCCTGTCCGACTCTTCCGCCCCT
TGGTCGCTGCCGACGCAAGTAAACGAAATAGCTCAAGCGGCTCTATGTCC
AAGCTCCTTGTCTGGATCCACGGGGGAGGGTGGACCATTGGCAGCATCGC
TTCGGATGACAAGATCGCACGGCGTCTTGCATCG

Synonyms

Publications