EWM29753.1, cds943 (CDS) Nannochloropsis gaditana

Overview
NameEWM29753.1
Unique Namecds943
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:791030..791107 -
Alignment locationCM002456.1:790741..790911 -
Alignment locationCM002456.1:790505..790638 -
Alignment locationCM002456.1:790315..790372 -
Alignment locationCM002456.1:789992..790183 -
Alignment locationCM002456.1:789831..789923 -
Alignment locationCM002456.1:789664..789769 -
Alignment locationCM002456.1:789326..789583 -
Alignment locationCM002456.1:788960..789248 -
Alignment locationCM002456.1:788671..788869 -
Alignment locationCM002456.1:788181..788546 -
Alignment locationCM002456.1:787117..788094 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29753.1
Productmediator of rna polymerase ii transcription subunit 14
Orig transcript idgnl|cribi|Naga_100022g59.852.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:791030..791107 -
CM002456.1supercontigCM002456.1:790741..790911 -
CM002456.1supercontigCM002456.1:790505..790638 -
CM002456.1supercontigCM002456.1:790315..790372 -
CM002456.1supercontigCM002456.1:789992..790183 -
CM002456.1supercontigCM002456.1:789831..789923 -
CM002456.1supercontigCM002456.1:789664..789769 -
CM002456.1supercontigCM002456.1:789326..789583 -
CM002456.1supercontigCM002456.1:788960..789248 -
CM002456.1supercontigCM002456.1:788671..788869 -
CM002456.1supercontigCM002456.1:788181..788546 -
CM002456.1supercontigCM002456.1:787117..788094 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
GO:0016592mediator complex
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006357regulation of transcription by RNA polymerase II
Vocabulary: Molecular Function
TermDefinition
GO:0140110transcription regulator activity
Vocabulary: INTERPRO
TermDefinition
IPR013947Mediator_Med14
Homology
BLAST of EWM29753.1 vs. NCBI_GenBank
Match: gi|585112333|gb|EWM29753.1| (mediator of rna polymerase ii transcription subunit 14 [Nannochloropsis gaditana])

HSP 1 Score: 2004.56 bits (5192), Expect = 0.000e+0
Identity = 973/973 (100.00%), Postives = 973/973 (100.00%), Query Frame = 0
Query:    1 MVKLTDIIYRIVDRAYEELFALITNTLPGQDFLDRREEIVNYVDGARHALLHVLVLLEWVWRQKDAINTATGGKVFIGLQAHHVRVALDRLFYTHRDLFRKQMATRPYAFPAAIDILAAGSSVARVSRAIDLSQSKTWLGDRHFLRELNLAIQSSLIVRERVPPQCTCARVENGTLSLMDADNFVLRLTLEHPSPFARWRLVDFQLQLPFKGGYGSCGNAFEVLKLEQRHIQELLAHLAHLLEGNVQPICDTYNLCHSFCNALKLEILILQAKELAKGCWTGHLEVDISRAGILNIVFWKGLDLRPNHEDKEMRLSTVNSKDVEENRFRKGNAMSSCCIRVGLAGEDKMRHLRARCSYQLASKGPVEQSNEELFSLLINQACVSVPSLLRNALEILVGYRLQVVYDILKQETTVKFLLQKGILIIAMHGNSLYLYFYGSYLAFGVDRKSGNIIITASYSRCGGSEKLEGLLHEWHTSIQDVVNPTSIESFIGVFQRVLRHLFLNYLALLASASYDLVCDRKCFELQDFESDKKGGSISREKSSIYFLLDSRSALASGELAPYVTNVGESWYYLELESRGTDLRMITPHAYLVMASASRKMAPLPYIKNRYLLDDFLAEEKSHEVWLSQAVTAARKVMQTCLKLDGAATALDFACPTEISLKNFLSNEKLNLNVGKTHSTRSIEEGKLQSLSVWCTGDDDWIWNIVLPALKVPRFSFDDKFMFKHRNEGWWLEYRNHDSAHIIRLGFRGVWDPLLLGMKLNDVVKAVAGLLSMAASLQRAHPHFVSSDSGEVIPLPLPKLIFWHSGGLACALCHSVFERPLDSVVKHQSPHQGGRFYLAFTDSVMHRVDGAWRLIEEDFCRCRDLKKLLERVEALAYPLRTLARTLSIWPKLDFVILPWSLNSVALTCQAASSRLLLLTVDKPLSDSCGSGVVRLTYGETNALDAEPSREWAKHEFDESAVQEALKACFGLSAV 973
            MVKLTDIIYRIVDRAYEELFALITNTLPGQDFLDRREEIVNYVDGARHALLHVLVLLEWVWRQKDAINTATGGKVFIGLQAHHVRVALDRLFYTHRDLFRKQMATRPYAFPAAIDILAAGSSVARVSRAIDLSQSKTWLGDRHFLRELNLAIQSSLIVRERVPPQCTCARVENGTLSLMDADNFVLRLTLEHPSPFARWRLVDFQLQLPFKGGYGSCGNAFEVLKLEQRHIQELLAHLAHLLEGNVQPICDTYNLCHSFCNALKLEILILQAKELAKGCWTGHLEVDISRAGILNIVFWKGLDLRPNHEDKEMRLSTVNSKDVEENRFRKGNAMSSCCIRVGLAGEDKMRHLRARCSYQLASKGPVEQSNEELFSLLINQACVSVPSLLRNALEILVGYRLQVVYDILKQETTVKFLLQKGILIIAMHGNSLYLYFYGSYLAFGVDRKSGNIIITASYSRCGGSEKLEGLLHEWHTSIQDVVNPTSIESFIGVFQRVLRHLFLNYLALLASASYDLVCDRKCFELQDFESDKKGGSISREKSSIYFLLDSRSALASGELAPYVTNVGESWYYLELESRGTDLRMITPHAYLVMASASRKMAPLPYIKNRYLLDDFLAEEKSHEVWLSQAVTAARKVMQTCLKLDGAATALDFACPTEISLKNFLSNEKLNLNVGKTHSTRSIEEGKLQSLSVWCTGDDDWIWNIVLPALKVPRFSFDDKFMFKHRNEGWWLEYRNHDSAHIIRLGFRGVWDPLLLGMKLNDVVKAVAGLLSMAASLQRAHPHFVSSDSGEVIPLPLPKLIFWHSGGLACALCHSVFERPLDSVVKHQSPHQGGRFYLAFTDSVMHRVDGAWRLIEEDFCRCRDLKKLLERVEALAYPLRTLARTLSIWPKLDFVILPWSLNSVALTCQAASSRLLLLTVDKPLSDSCGSGVVRLTYGETNALDAEPSREWAKHEFDESAVQEALKACFGLSAV
Sbjct:    1 MVKLTDIIYRIVDRAYEELFALITNTLPGQDFLDRREEIVNYVDGARHALLHVLVLLEWVWRQKDAINTATGGKVFIGLQAHHVRVALDRLFYTHRDLFRKQMATRPYAFPAAIDILAAGSSVARVSRAIDLSQSKTWLGDRHFLRELNLAIQSSLIVRERVPPQCTCARVENGTLSLMDADNFVLRLTLEHPSPFARWRLVDFQLQLPFKGGYGSCGNAFEVLKLEQRHIQELLAHLAHLLEGNVQPICDTYNLCHSFCNALKLEILILQAKELAKGCWTGHLEVDISRAGILNIVFWKGLDLRPNHEDKEMRLSTVNSKDVEENRFRKGNAMSSCCIRVGLAGEDKMRHLRARCSYQLASKGPVEQSNEELFSLLINQACVSVPSLLRNALEILVGYRLQVVYDILKQETTVKFLLQKGILIIAMHGNSLYLYFYGSYLAFGVDRKSGNIIITASYSRCGGSEKLEGLLHEWHTSIQDVVNPTSIESFIGVFQRVLRHLFLNYLALLASASYDLVCDRKCFELQDFESDKKGGSISREKSSIYFLLDSRSALASGELAPYVTNVGESWYYLELESRGTDLRMITPHAYLVMASASRKMAPLPYIKNRYLLDDFLAEEKSHEVWLSQAVTAARKVMQTCLKLDGAATALDFACPTEISLKNFLSNEKLNLNVGKTHSTRSIEEGKLQSLSVWCTGDDDWIWNIVLPALKVPRFSFDDKFMFKHRNEGWWLEYRNHDSAHIIRLGFRGVWDPLLLGMKLNDVVKAVAGLLSMAASLQRAHPHFVSSDSGEVIPLPLPKLIFWHSGGLACALCHSVFERPLDSVVKHQSPHQGGRFYLAFTDSVMHRVDGAWRLIEEDFCRCRDLKKLLERVEALAYPLRTLARTLSIWPKLDFVILPWSLNSVALTCQAASSRLLLLTVDKPLSDSCGSGVVRLTYGETNALDAEPSREWAKHEFDESAVQEALKACFGLSAV 973          
BLAST of EWM29753.1 vs. NCBI_GenBank
Match: gi|661178324|emb|CDH58807.1| (med14-domain-containing protein [Lichtheimia corymbifera JMRC:FSU:9682])

HSP 1 Score: 103.219 bits (256), Expect = 1.461e-18
Identity = 104/420 (24.76%), Postives = 192/420 (45.71%), Query Frame = 0
Query:    1 MVKLTDIIYRIVDRAYEELFALITNTLPGQDFLDRREEIVNYVDGARHALLHVLVLLEWVWRQKDAINTATGGKVFIGLQAHHVRVALDRLFYTHRDLFRKQMATRPYAFPAAIDILAAGSSVARVSRAIDLSQSKTWLGDRHFL---RELNLAIQSSLIVRERVPPQCTCARVENGTLSLMDADNFVLRLTLEHPSPFARWRLVDFQLQLPFKGGYGSCGNAFEVLKLEQRHI----QELLAHLAHLLEGNVQ-----PICDTYNLCHSFCNALKLEILILQAKELAKGCWTGHLEV--DISRAGILNIVFWKGLDLRPNHEDKEMRL--------STVNSKDVEENRFRKGNAMSSCCIRVGLAGEDKMRHLRARCSYQLASKGPVEQSNEELFSLLINQACVSVPSLLRNALEILVG 398
            MV L  +I ++V++ Y +L  L T+TL  +  ++++ +I+ YV   ++ +L + VL++W     D I        F+  Q      A   L   H +L R ++  R +  P A+D+L  GS     S+  D+   K+ L D   L   R++N  I+  ++  E +P      R+E+G ++    D F + LTL  P    RW +V   +Q+    G G+      + +++++++    Q+ L       +   +     P+ + ++  H FC  ++LEI+ +Q+  ++K  W   L+V  D +R  ++ +V+WKG     +    ++ L        +T+    V+E   RKG    S  I + ++  D MR L  R    L +   +   ++E        A VS     +N LE+L G
Sbjct:   68 MVPLQVLIGKMVNKTYADLQTL-TDTLSSRGEVEKKRQILKYVTFVQNQMLKLSVLVKWA-ENADDIQMCQNIMAFLANQNQFFHDATRFLNKIHVELPRARI--RNFDIPTAVDVLTTGSYQRMPSKFKDMV-PKSPLTDEEVLETFRKMNDVIRMRMLTTEVLPSPMQHYRIESGRITFTIKDEFEVSLTLMGPPSEQRWWIVSLDIQVKSTVGSGAADVDISLNEIQRQYLRVNAQKQLVPPQPPQDEQTKTPLFFPLVNLHDYLHLFCLNMQLEIIYMQSTMVSKTRWLEQLKVQMDPTRNKLV-LVYWKGGSPTAHWAHPQLELAGRPLENSTTIEISVVDEKSKRKGPY--SDQINMAISVRDDMRGLVQRAG--LGASAMLSAVDDE-----DKPAVVSALQYPKNQLEVLWG 472          
BLAST of EWM29753.1 vs. NCBI_GenBank
Match: gi|953492002|emb|CEG45579.1| (mediator of rna polymerase ii transcription subunit 14-like [Plasmopara halstedii])

HSP 1 Score: 98.2117 bits (243), Expect = 4.050e-17
Identity = 87/367 (23.71%), Postives = 163/367 (44.41%), Query Frame = 0
Query:    2 VKLTDIIYRIVDRAYEELFALITNTLPGQDFLDRREEIVNYVDGARHALLHVLVLLEWVWRQKDAINTATGGKVFIGLQAHHVRVALDRLFYTHRDLFRKQMATRPYAFPAAIDILAAGS--SVARVSRAIDLSQSKTWLGDRHFLRELNLAIQSSLIVRERVPPQCTCARVENGTLSLMDADNFVLRLTLEHPSPFARWRLVDFQLQLPFKGGY-----GSCGNAFEVLKLEQ---RHIQELLAHLAHLLEGNVQPICDTYNLCHSFCNALKLEILILQAKELAKGCWTGHLEVD-ISRAGILNIVFWKGLDLRPNHEDKEMRLSTVNSKDVEE-----NRFRKGNAM----SSCCIRVGLAGEDK 348
            VK +++++R VDR+YE+ F  + + LP     DRRE ++ ++  +R     +L LL+W   Q   +           L  ++V    DRLF+ H DL R +   R Y    A+D+L   S   +  + R     +    +      +E+   I+  LI  E +P Q +  +++ G ++      F + LT++     A+W+++D    L     +      +  +A  +++       H   L   L  ++  + +P  D + +   FC++L L+IL  Q K L++G W   + +  +     L+I +W    +R     KE ++ T   + ++         RKG+ +    SS CIR+G   + K
Sbjct:   12 VKASELVHRAVDRSYED-FRTLMHQLPTMRENDRREPLLAHIQSSRKRFAQILALLKWSV-QSPLLQQCNTLLQQTELYRNNVNETNDRLFFMHADLNRAK--ERRYDLSTAVDVLYGQSYLRLPTIIRNAMFPREMPEVDTEEATKEVADFIRFRLIEAE-IPEQFSNVKLDGGFVTCQAEGEFEIVLTIQGKDKDAKWKVIDVNTALTDTQSFEEHSRAASTSALHIIRTNAPNAAHYNHLKNLLQRVMNKSTKPFVDAFTVMREFCSSLALQILASQGKLLSEGRWKNRIMIQHLREQNALDICYWPNACVR-----KETQIITEQQRMLQHLSDPVATTRKGSVLPFPESSLCIRLGFDPDKK 368          
BLAST of EWM29753.1 vs. NCBI_GenBank
Match: gi|1043296310|gb|OBZ81917.1| (Mediator of RNA polymerase II transcription subunit 14, partial [Choanephora cucurbitarum])

HSP 1 Score: 96.6709 bits (239), Expect = 1.099e-16
Identity = 78/311 (25.08%), Postives = 140/311 (45.02%), Query Frame = 0
Query:    1 MVKLTDIIYRIVDRAYEELFALITNTLPGQDFLDRREEIVNYVDGARHALLHVLVLLEWVWRQKDAINTATGGKVFIGLQAHHVRVALDRLFYTHRDLFRKQMATRPYAFPAAIDILAAGSSVARVSRAIDLSQSKTWLGDRHFL---RELNLAIQSSLIVRERVPPQCTCARVENGTLSLMDADNFVLRLTLEHPSPFARWRLVDFQLQLPFKGGYGSCGNAFEVLKLEQRHIQELLAHLAHLLEGNVQ------PICDTYNLCHSFCNALKLEILILQAKELAKGCWTGHLEVDISRAGI-LNIVFWKG 301
            MV L  +I ++V ++Y +L  L T+TLP    ++++  I+ Y    R   L +LVL++W    +D I        F+  Q    +  +D L   H  L   ++  R +  P A+D+L  G+   R+   I    +   L D+  L   + +N  I+  +I  E +P      R+ENG +     + F + LTL   S   RW +V   + +      G+  +    L   Q+    + A    +   +++      P+ + Y+  H  C  ++LE+L +QA  LAK  W   L+V ++     L +++W+G
Sbjct:   33 MVPLRTLIAKLVHKSYADLLTL-TDTLPSMSDVEKKRRILTYSLSVRKQFLKLLVLIKWAENAED-IQMCQNIMAFLANQNKIFQDTVDYLHNIHSKLPAARL--RNFDIPTAVDVLTTGT-YQRMPTKIKDMMAPVPLSDQEVLETFQNMNDVIRMRMITTEVLPSPMQTYRIENGRIYFTIQNEFEVALTLMGHSHDRRWWIVSLDMLVQATSTGGAAEDVDITLNETQKQHLRVNAQKQLVPPPSMESNSLFFPLVNMYDYLHLCCLNMQLEVLYIQAAMLAKTRWINQLKVQMNPDRTKLTLIYWRG 338          
BLAST of EWM29753.1 vs. NCBI_GenBank
Match: gi|313233862|emb|CBY10031.1| (unnamed protein product [Oikopleura dioica])

HSP 1 Score: 95.1301 bits (235), Expect = 4.510e-16
Identity = 91/345 (26.38%), Postives = 162/345 (46.96%), Query Frame = 0
Query:    4 LTDIIYRIVDRAYEELFALITNTLPGQDFLDRREEIVNYVDGARHALLHVLVLLEWVWRQKDAINTATGGKVFIGLQAHHVRVALDRLFYTHRDLFRKQMATRP-YAFPAAIDILAAGSSVARVSRAI-DLSQSKTWLGDRH---FLRELNLAIQSSLIVRERVPPQCTCARVENGTLSLMDADNFVLRLTLEHPSPFARWRLVDFQLQLPFKGGYGSCGNAFEVLKLEQRHIQELLAHLAHLLEGNVQPICDTYNLCHSFCNALKLEILILQAKELAKGCWTGHLEVDISRAGI-LNIVFWKGLDLRPNHEDKEMRLS-TVNSKDVEEN-RFRKGNAMSSCCIR 340
            LT ++   + +AY EL  L    L G++ + R+ EI+++V   R + + ++ L++W  +Q +  +T      F+  Q+       DRL+    D  R   A  P +A P AID+L  GS    + RAI D    +  L + +    +  LN  I+  L V+  +P Q T  +++ G +S    + F + LT+   S    W L+  Q+ +        C ++     +   H+Q + +     L  N +PICD Y+  H+FC++L+LE+L  Q ++L    W  ++ ++    G  L I +WK        +DK+  ++  VN +D  +         +SSC I+
Sbjct:   32 LTMLVESTIHKAYGELSNL-AELLQGKEDMHRKMEIISFVIRTRRSFIRLIALVKWA-QQVNKTSTCMDIVDFMDNQSGMFTDTADRLYSLAHDFLRH--ARLPTFAVPTAIDVLTTGS-YPDLPRAIKDRYVPQEPLSEENRAETITRLNQVIKCRL-VQCDLPKQITDFKIKKGIVSFEVPNEFKVDLTIRGDSQDTPWTLLKVQIFV------KDCTSSDNRNLVHHEHLQFIHSLCQSRLYKNEKPICDLYSCLHTFCSSLQLEVLAAQTQKLINEKWKQYIIIEKYEEGAKLVISYWKD-------QDKDYSITIQVNERDSSDVLEIVHNPTLSSCSIK 357          
BLAST of EWM29753.1 vs. NCBI_GenBank
Match: gi|301105365|ref|XP_002901766.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262099104|gb|EEY57156.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 94.7449 bits (234), Expect = 5.762e-16
Identity = 93/378 (24.60%), Postives = 163/378 (43.12%), Query Frame = 0
Query:    2 VKLTDIIYRIVDRAYEELFALITNTLPGQDFLDRREEIVNYVDGARHALLHVLVLLEW-----VWRQKDAINTATGGKVFIGLQAHHVRVALDRLFYTHRDLFRKQMATRPYAFPAAIDILAAGSSV-----------ARVSRAIDLSQSKTWLGDRHFLRELNLAIQSSLIVRERVPPQCTCARVENGTLSLMDADNFVLRLTLEHPSPFARWRLVDFQLQLPFKGGYGSCGNAFEVLKLEQ-RHIQELLAHLAHL-------LEGNVQPICDTYNLCHSFCNALKLEILILQAKELAKGCWTGHLEVDISR-AGILNIVFWKGLDLRPNHE--DKEMRLSTVNSKDVEENRFRKGNAM----SSCCIRVGLAGEDK 348
            VK +++++R VD++YE+ F  + + LP     +RRE +++++  +R     +L +L+W     + +Q D +   T          ++V    DRLF+ H DL R +   R Y    A+D+L  GS +            R    +D  Q+ T + D    R          ++   +P Q +  ++E G ++      F + LT++     A+WR++     L     + +   A     L   R      AH  HL       +  + +P  D + +   FC++L L+IL  Q K L +G W   + +   R   IL+I +W    +R   +   ++ RL    S  V     RKG+A+    SS C+R+G     K
Sbjct:   12 VKASELVHRAVDKSYED-FRTLMHQLPTMREEERREPLLSHLQSSRKRFAQLLAVLKWSVQSPLLQQCDTLLQQTE------TYRNNVNETNDRLFFMHADLNRAK--ERQYDLSTAVDVLYGGSYLRLPTIIKNAMFPRELPGVDTEQAATKVADIIRFR----------LIEAEIPEQFSNIKLEGGFVTCQAEGEFEIVLTIQGKEKDAKWRVISVNTALTDAQAFENHSQAASTSALRIIRTNAPNAAHYNHLKNLVQRAMNKSEKPFVDAFMVMREFCSSLALQILASQGKLLMEGRWKNRIMIKHLRDQNILDICYWPKACVRKEAQALTEQQRLIQQLSDPVATA--RKGSALPYPESSLCVRLGFDPNKK 368          
BLAST of EWM29753.1 vs. NCBI_GenBank
Match: gi|669306466|gb|KFD49993.1| (hypothetical protein M513_09086 [Trichuris suis] >gi|669324487|gb|KFD64727.1| hypothetical protein M514_09086 [Trichuris suis])

HSP 1 Score: 93.9745 bits (232), Expect = 9.317e-16
Identity = 81/310 (26.13%), Postives = 145/310 (46.77%), Query Frame = 0
Query:   12 VDRAYEELFALITNTLPGQDFLDRREEIVNYVDGARHALLHVLVLLEWVWRQKDAINTATGGKVFIGLQAHHVRVALDRLFYTHRDLFRKQMATRPYAF--PAAIDILAAGSSVARVSRAIDL----SQSKTWLGDRHFLRELNLAIQSSLIVRERV-PPQCTCARVENGTLSLMDADNFVLRLTLEHPSPFARWRLVDFQLQLPFKGGYGSCGNAFEVLKLEQRHIQELLAHLAHLLEGNV----QPICDTYNLCHSFCNALKLEILILQAKELAKGCWTGHLEV-DISRAGILNIVFWKGLDLRPNHE 309
            V +A+++L  ++ + LP +  L+R+  I  + +  R   + +L +L+W  R    ++  TG + F+  QA       DRLF     +    ++ R  AF  P A+D+L  G+   R+SRAI+      +  T    +   R LN  ++  ++ +  + P +  C  V +G  +   A  F + LTL    P   W L++F++ +          +  E+L   Q      +A L   L+G +    +P+ + YNL HSFC +++L++L  Q   L     +G L V +  R+  L + +WK    RP+ E
Sbjct:   41 VQKAFQDL-TILADLLPKKSDLERKTSIAQFANSTRQLFIRILAVLKWA-RCGAKVDICTGIQCFLDQQASMFVDTADRLFQLCNTVL---LSARLPAFQIPIAVDVLTLGT-YPRLSRAIEQRFVPPEKITPAELQSITRRLNQVVKRRIVSQLGILPKRMRCFEVSDGMATFCVAGEFEVTLTLLGQLPVTPWTLLNFRILV----ADPRVTDGAELLNAHQ------IAFLHQYLQGKLNIAKEPLVELYNLLHSFCLSIQLDLLFCQTNRLLGEYMSGSLAVEEYVRSERLVVTYWKEDQSRPHRE 334          
BLAST of EWM29753.1 vs. NCBI_GenBank
Match: gi|730369050|gb|KHJ40951.1| (mediator complex subunit MED14 [Trichuris suis])

HSP 1 Score: 93.9745 bits (232), Expect = 1.022e-15
Identity = 81/310 (26.13%), Postives = 145/310 (46.77%), Query Frame = 0
Query:   12 VDRAYEELFALITNTLPGQDFLDRREEIVNYVDGARHALLHVLVLLEWVWRQKDAINTATGGKVFIGLQAHHVRVALDRLFYTHRDLFRKQMATRPYAF--PAAIDILAAGSSVARVSRAIDL----SQSKTWLGDRHFLRELNLAIQSSLIVRERV-PPQCTCARVENGTLSLMDADNFVLRLTLEHPSPFARWRLVDFQLQLPFKGGYGSCGNAFEVLKLEQRHIQELLAHLAHLLEGNV----QPICDTYNLCHSFCNALKLEILILQAKELAKGCWTGHLEV-DISRAGILNIVFWKGLDLRPNHE 309
            V +A+++L  ++ + LP +  L+R+  I  + +  R   + +L +L+W  R    ++  TG + F+  QA       DRLF     +    ++ R  AF  P A+D+L  G+   R+SRAI+      +  T    +   R LN  ++  ++ +  + P +  C  V +G  +   A  F + LTL    P   W L++F++ +          +  E+L   Q      +A L   L+G +    +P+ + YNL HSFC +++L++L  Q   L     +G L V +  R+  L + +WK    RP+ E
Sbjct:   41 VQKAFQDL-TILADLLPKKSDLERKTSIAQFANSTRQLFIRILAVLKWA-RCGAKVDICTGIQCFLDQQASMFVDTADRLFQLCNTVL---LSARLPAFQIPIAVDVLTLGT-YPRLSRAIEQRFVPPEKITPAELQSITRRLNQVVKRRIVSQLGILPKRMRCFEVSDGMATFCVAGEFEVTLTLLGQLPVTPWTLLNFRILV----ADPRVTDGAELLNAHQ------IAFLHQYLQGKLNIAKEPLVELYNLLHSFCLSIQLDLLFCQTNRLLGEYMSGSLAVEEYVRSERLVVTYWKEDQSRPHRE 334          
BLAST of EWM29753.1 vs. NCBI_GenBank
Match: gi|511006492|gb|EPB87802.1| (hypothetical protein HMPREF1544_05331 [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 91.2781 bits (225), Expect = 5.728e-15
Identity = 80/312 (25.64%), Postives = 139/312 (44.55%), Query Frame = 0
Query:    1 MVKLTDIIYRIVDRAYEELFALITNTLPGQDFLDRREEIVNYVDGARHALLHVLVLLEWVWRQKDAINTATGGKVFIGLQAHHVRVALDRLFYTHRDLFRKQMATRPYAFPAAIDILAAGSSVARVSRAIDLSQSKTWLGDRHFL---RELNLAIQSSLIVRERVPPQCTCARVENGTLSLMDADNFVLRLTLEHPSPFARWRLVDFQLQLPFKGGYGSCGNAFEVLKLEQRHIQELLAHLAHLLEGNVQ-------PICDTYNLCHSFCNALKLEILILQAKELAKGCWTGHLEVDISRAGI-LNIVFWKG 301
            MV L  +I +++ +A+ +L  L T TLP    ++++ +I+ Y    R   L +LVL++W     D I        F+  Q       +D L   + +L   ++  R +  P A+D+L  G+   R+   I    + T L D   L   + +N  I+  +I  E +P      R+ENG +     + F + LTL   S   RW +V   + +      G+  +    L   Q+    + A    L+  N         P+ + Y+  H  C  ++LEIL +QA  L+K  W   L+V +++    L +V+W+G
Sbjct:   58 MVPLKALIGKLIHKAHADLITL-TETLPSMGEVEKKRQILTYTTFVRKQFLKLLVLVKWAENAND-IQMCQNIMAFLANQNQIFTSTVDFLHKIYTELPAARL--RNFDIPTAVDVLTTGT-YQRMPTKIKDMLTPTPLTDEEVLETFQNMNDVIRMRMITTEVLPSPMRKYRIENGRIYFSIKNEFEVALTLMGHSNDRRWWIVSLDVFVQATSVGGASEDVDISLNDNQKQHLRVNAQ-KQLVPPNPDESTKLFFPLVNMYDYLHLCCLNMQLEILYIQAAMLSKTRWMNQLKVQMNQDRTKLTVVYWRG 363          
BLAST of EWM29753.1 vs. NCBI_GenBank
Match: gi|695388962|ref|XP_009519314.1| (hypothetical protein PHYSODRAFT_478431 [Phytophthora sojae] >gi|348684211|gb|EGZ24026.1| hypothetical protein PHYSODRAFT_478431 [Phytophthora sojae])

HSP 1 Score: 90.8929 bits (224), Expect = 8.730e-15
Identity = 93/377 (24.67%), Postives = 161/377 (42.71%), Query Frame = 0
Query:    2 VKLTDIIYRIVDRAYEELFALITNTLPGQDFLDRREEIVNYVDGARHALLHVLVLLEW-----VWRQKDAINTATGGKVFIGLQAHHVRVALDRLFYTHRDLFRKQMATRPYAFPAAIDILAAGSSVARVSRAIDLSQSKTWLGDRHFLREL------NLAIQSSLIVRER-----VPPQCTCARVENGTLSLMDADNFVLRLTLEHPSPFARWRLVDFQLQLPFKGGYGSCGNAFEVLKLEQ-RHIQELLAHLAHL-------LEGNVQPICDTYNLCHSFCNALKLEILILQAKELAKGCWTGHLEVDISR-AGILNIVFW-KGLDLRPNHEDKEMRLSTVNSKDVEENRFRKGNAM----SSCCIRVGLAGEDK 348
            VK +++++R VD++YE+ F  + + LP     +RRE ++ ++  +R     +L +L+W     + +Q D +   T          ++V    DRLF+ H DL R +   R Y    A+D+L  GS +          +  T + +  F REL        A + + I+R R     +P Q +  ++E G ++      F + LT++     A+WR++     L     +     A     L   R      AH  HL       +  + +P  D + +   FC++L L+IL  Q K L  G W   + +   R   +L+I +W K    +      E +       D   N  R+G+A+    SS C+R+G     K
Sbjct:   12 VKASELVHRAVDKSYED-FRTLMHQLPTMREEERREPLLAHLQSSRKRFAQILAVLKWSVQSPLLQQCDTLLQQTES------YRNNVNETNDRLFFMHADLNRAK--ERRYDLSTAVDVLYGGSYL----------RLPTIIKNAMFPRELPEVDTEQAATEVADIIRFRLIEAEIPEQFSNIKLEGGFVTCQAEGEFEIVLTIQGKEKDAKWRVISVNTALTDSQAFEDHSQAASTSALRIIRTNAPNAAHYNHLKNLVQRAMNKSEKPFVDAFQVMREFCSSLALQILASQGKLLMDGRWKNRIMIKHHRDQNVLDICYWPKACTWKEAQALTEQQRLLQQLSDPVANA-RRGSALPFPESSLCVRLGFDPNKK 368          
The following BLAST results are available for this feature:
BLAST of EWM29753.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112333|gb|EWM29753.1|0.000e+0100.00mediator of rna polymerase ii transcription subuni... [more]
gi|661178324|emb|CDH58807.1|1.461e-1824.76med14-domain-containing protein [Lichtheimia corym... [more]
gi|953492002|emb|CEG45579.1|4.050e-1723.71mediator of rna polymerase ii transcription subuni... [more]
gi|1043296310|gb|OBZ81917.1|1.099e-1625.08Mediator of RNA polymerase II transcription subuni... [more]
gi|313233862|emb|CBY10031.1|4.510e-1626.38unnamed protein product [Oikopleura dioica][more]
gi|301105365|ref|XP_002901766.1|5.762e-1624.60conserved hypothetical protein [Phytophthora infes... [more]
gi|669306466|gb|KFD49993.1|9.317e-1626.13hypothetical protein M513_09086 [Trichuris suis] >... [more]
gi|730369050|gb|KHJ40951.1|1.022e-1526.13mediator complex subunit MED14 [Trichuris suis][more]
gi|511006492|gb|EPB87802.1|5.728e-1525.64hypothetical protein HMPREF1544_05331 [Mucor circi... [more]
gi|695388962|ref|XP_009519314.1|8.730e-1524.67hypothetical protein PHYSODRAFT_478431 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna943rna943Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications