rna900, rna900 (mRNA) Nannochloropsis gaditana

Overview
Namerna900
Unique Namerna900
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length816
Alignment locationCM002456.1:678975..681171 -

Link to JBrowse

Properties
Property NameValue
Productpeptidyl-prolyl cis-trans isomerase cyclophilin type
Orig transcript idgnl|cribi|Naga_100022g9.876.mrna
Orig protein idgnl|cribi|Naga_100022g9.876
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:678975..681171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100022g9gene863Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29777.1cds900Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna900rna900-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna900 ID=rna900|Name=rna900|organism=Nannochloropsis gaditana|type=mRNA|length=816bp
TGTGGATGTAACCAGGCGCACCACACGGCTACACAGGAACCACTTCTCTT
GATGAGTTGTCGAGGAGATCACATTGATTCATGCGGCCACGGGCATGATC
ATGCCCATGGCGAGGAATGCGATCATGAAGCGGAAGATCCTGATGGTCAA
TCTATGTTTGCGGCCATCGACACGAGCAAGGTTCGATGTCTAAATGAAAA
CGAAATTGGAGCATGCTTGCACCCTTTCAAGCTGTACAACAAACGTCGAG
AGCCCGAGCCTCGACTAGACAGCCACGATGACGACCCGGAGCTATTACTC
TTTGTACCCTTCACACGCATTGTGAAATTGAAGAGTATCAATATAATTGG
GGGCCATGCCGGTGAAGGCACGGCGCCGACTAAAATCAAATTGTTCGTAA
ATCGCGATGACATCGATTTTGGTAACTGCAACGAGTTGATGGCGGCTCAA
GAATTGGAACTCGTTGCAAATGCCGCCGCAATGGGTGACGGGGGTGGAAT
AGACTATCCTCTGAAAGTGAGCAAATTCCAGAACGTGAGCAGCCTGACCA
TCTTTTTCAGCGAGAATGGAGGTGGCGACGTTACATCTGTTTCCTACGTA
GGATTCAAAGGCGAGATAACCTCGGTGCGGCATGGGGTCGTCGAATGCGT
GTATGAGTCTGCCCCTCAGGCGGCCGATCACAAACAGGACGCTGGGGAAC
ACTTAATGCCGGATGTTGCTGGAAATTGAGCGGTATTAACAAGCGGCAGG
TGGGAGTAGAAGCAGAGCGCATATGTATATACCCAAAGAATCCGGGACGC
CGGGCGAGGTAGTAAG
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protein sequence of rna900

>rna900-protein ID=rna900-protein|Name=rna900|organism=Nannochloropsis gaditana|type=polypeptide|length=569bp
MLVKGRMRGRPAIWPTYLLTFTLPMSFAWFPTPLHPSHTPVARGQIRGTF
SSRSTPSEDACPTEYPKSSSIPAETPSDTPPSGRPARAWNTISRRGAVAA
ASTLIPALINVGIPAAGGEGRAQAALEEFPWVTKGGLLDGVLPESVLVES
LPLNNQAIKGMGQALSRINELRGLNVLQGSGLCNEAGQVIADLSFVTAAT
SEPGMLNTTAAEDNGEPGDISTFRWSKIKGLAENVRATYNREKDAFPYAL
TIRPNTTAESQARRRVRFANELLLLDLAISNLENATQHESVADTLRYQEE
SLLHLGHLGELMVAKFPFSPPKNDDRREDDYFNLPRLFGRAEVIFFLKEL
GKDKEGSNGNKEENGALKTANMTVIVDGFNAPISAGNFIDLCQRGFYNRL
PLVTEKVRSGNKDDQEVELVVGGRYKTGFVDPITGKQRRVPLEVMRAEPE
GNRPFYGQARNTGLFTRAPPLLSYRTPRAIGLLHPEQDGNGANSEFFWLQ
RDARCVETAKSLDGKFTLIGYVVGGGRENDILPFLDDSFQIESVQVSWGY
DHLVRSRVGFIDILLQGDE
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mRNA from alignment at CM002456.1:678975..681171-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna900 ID=rna900|Name=rna900|organism=Nannochloropsis gaditana|type=mRNA|length=2197bp|location=Sequence derived from alignment at CM002456.1:678975..681171- (Nannochloropsis gaditana)
CCCTCCATCTCACCCGTGAACGCGCACAGGGGCCAGTATAGACTACACAT
GGGCAGCCATCCGAGTACATAAACCTCGTCTACCACAAATCATTCGGCAT
GCTCGTGAAAGGCAGAATGCGTGGCCGTCCTGCCATCTGGCCTACCTACC
TCCTGACATTTACTCTCCCCATGTCGTTTGCCTGGTTTCCAACCCCCTTG
CACCCCTCCCATACTCCTGTCGCAAGAGGACAGATACGGGGAACGTTTTC
ATCCCGGTCTACCCCGTCGGAGGACGCCTGCCCGACGGAGTATCCGAAAT
CATCCTCGATCCCAGCCGAGACGCCATCAGACACGCCTCCGTCAGGCCGT
CCTGCGCGTGCTTGGAATACGATAAGCCGGCGTGGAGCTGTGGCTGCAGC
TTCCACTTTAATCCCTGCACTTATAAACGTAGGTATCCCAGCAGCAGGCG
GGGAAGGAAGGGCACAGGCGGCCTTGGAAGAATTTCCATGGGTGACCAAG
GGAGGTCTGTTGGATGGAGTCCTCCCGGAGTCGGTCCTAGTGGAATCTTT
GCCCTTGAACAATCAAGCCATTAAAGGAATGGGCCAAGCACTCAGTCGAA
TAAATGAACTTCGCGGATTGAATGTGCTACAGGGCTCAGGGCTCTGCAAT
GAAGCCGGTCAGGTAATCGCGGACCTCAGCTTTGTCACTGCAGCCACCTC
CGAGCCAGGCATGCTCAATACGACAGCAGCCGAAGACAATGGAGAACCAG
GAGACATATCCACATTCCGGTGGTCCAAAATAAAGGGTTTGGCAGAGAAC
GTCCGGGCGACGTACAACCGAGAAAAAGATGCGTTCCCCTACGCGCTGAC
GATCCGCCCGAACACGACGGCCGAGTCCCAAGCGAGGCGGCGGGTCCGCT
TCGCGAATGAGCTCCTCCTCTTGGATTTGGCAATCTCGAATCTGGAGAAC
GCTACTCAACACGAAAGCGTAGCGGACACGCTCCGATATCAAGAAGAGTC
CTTGCTCCATCTCGGGCATCTAGGGGAGCTTATGGTTGCGAAGTTCCCTT
TCTCCCCGCCGAAGAATGACGACCGTCGCGAGGACGATTATTTCAATCTC
CCAAGGCTCTTCGGACGAGCTGAGGTTATCTTTTTCCTGAAGGAGTTGGG
CAAAGATAAGGAGGGTAGCAACGGGAATAAGGAGGAAAATGGCGCTTTGA
AAACAGCGAACATGACAGTGATCGTGGATGGTTTCAATGCACCTATATCT
GCCGGAAATTTCATCGACTTGTGTCAGCGAGGTTTTTACAATCGCTTGCC
TCTCGTCACAGAGAAAGTTCGAAGCGGAAATAAGGATGACCAGGAGGTGG
AGCTGGTGGTGGGTGGGCGCTATAAGACGGGTTTCGTCGACCCCATTACG
GGAAAGCAGAGGCGGGTGCCGTTGGAGGTGATGCGCGCAGAACCAGAGGG
CAACCGTCCATTCTATGGCCAAGCGAGAAACACGGGCCTCTTTACTCGGG
CGCCGCCGCTGCTGTCTTATCGGACGCCTCGAGCGATCGGGCTGTTGCAT
CCTGAGCAAGACGGCAACGGCGCCAACAGCGAGTTCTTCTGGTTGCAGCG
TGACGCCCGATGTGTGGAAACGGCTAAGTCGTTGGATGGAAAGTTTACAT
TGATTGGATACGTGGTGGGAGGCGGGAGAGAAAACGACATCCTTCCGTTC
CTGGACGATAGCTTTCAGATCGAGTCGGTGCAAGTGTCATGGGGTTACGA
CCATCTCGTGCGCTCCCGCGTGGGTTTCATCGACATTCTTTTGCAGGGGG
ACGAGTAATGAAAGAGAGGAGATTGGACGAAGGAGCCAGAAGGTGGAATA
GGGCTTGTGGCGCCAAGCATTCTGCGGAGGGCCGGGAGGGGTGAGGGGGA
TCTCCTCTTGCTTTTTCGGCATAGCATCCAAATTTAGATTGTTCCTCGTA
GAGACTCGTTGCCGCCACAGGTTGGCTGGTGTACTCTAGTACATAGACAC
GTATATCAAGCGTGCAAGCTGGGAACGTTCTTCGCACGGCAAGTCCGCGT
ATCCCTTAAGAAGTTGGGCGTATACACCTAAGTTTCCTCCAAGTAGTGCC
AACAGTAGTGAATGGCACAATTTAAAATACCAGTTTGGTTTGAGAAAAAA
ATAAAGCGAAAAATAAAAACATGCATAACATGAAAGATCTTACTACC
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Coding sequence (CDS) from alignment at CM002456.1:678975..681171-

>rna900 ID=rna900|Name=rna900|organism=Nannochloropsis gaditana|type=CDS|length=1710bp|location=Sequence derived from alignment at CM002456.1:678975..681171- (Nannochloropsis gaditana)
ATGCTCGTGAAAGGCAGAATGCGTGGCCGTCCTGCCATCTGGCCTACCTA
CCTCCTGACATTTACTCTCCCCATGTCGTTTGCCTGGTTTCCAACCCCCT
TGCACCCCTCCCATACTCCTGTCGCAAGAGGACAGATACGGGGAACGTTT
TCATCCCGGTCTACCCCGTCGGAGGACGCCTGCCCGACGGAGTATCCGAA
ATCATCCTCGATCCCAGCCGAGACGCCATCAGACACGCCTCCGTCAGGCC
GTCCTGCGCGTGCTTGGAATACGATAAGCCGGCGTGGAGCTGTGGCTGCA
GCTTCCACTTTAATCCCTGCACTTATAAACGTAGGTATCCCAGCAGCAGG
CGGGGAAGGAAGGGCACAGGCGGCCTTGGAAGAATTTCCATGGGTGACCA
AGGGAGGTCTGTTGGATGGAGTCCTCCCGGAGTCGGTCCTAGTGGAATCT
TTGCCCTTGAACAATCAAGCCATTAAAGGAATGGGCCAAGCACTCAGTCG
AATAAATGAACTTCGCGGATTGAATGTGCTACAGGGCTCAGGGCTCTGCA
ATGAAGCCGGTCAGGTAATCGCGGACCTCAGCTTTGTCACTGCAGCCACC
TCCGAGCCAGGCATGCTCAATACGACAGCAGCCGAAGACAATGGAGAACC
AGGAGACATATCCACATTCCGGTGGTCCAAAATAAAGGGTTTGGCAGAGA
ACGTCCGGGCGACGTACAACCGAGAAAAAGATGCGTTCCCCTACGCGCTG
ACGATCCGCCCGAACACGACGGCCGAGTCCCAAGCGAGGCGGCGGGTCCG
CTTCGCGAATGAGCTCCTCCTCTTGGATTTGGCAATCTCGAATCTGGAGA
ACGCTACTCAACACGAAAGCGTAGCGGACACGCTCCGATATCAAGAAGAG
TCCTTGCTCCATCTCGGGCATCTAGGGGAGCTTATGGTTGCGAAGTTCCC
TTTCTCCCCGCCGAAGAATGACGACCGTCGCGAGGACGATTATTTCAATC
TCCCAAGGCTCTTCGGACGAGCTGAGGTTATCTTTTTCCTGAAGGAGTTG
GGCAAAGATAAGGAGGGTAGCAACGGGAATAAGGAGGAAAATGGCGCTTT
GAAAACAGCGAACATGACAGTGATCGTGGATGGTTTCAATGCACCTATAT
CTGCCGGAAATTTCATCGACTTGTGTCAGCGAGGTTTTTACAATCGCTTG
CCTCTCGTCACAGAGAAAGTTCGAAGCGGAAATAAGGATGACCAGGAGGT
GGAGCTGGTGGTGGGTGGGCGCTATAAGACGGGTTTCGTCGACCCCATTA
CGGGAAAGCAGAGGCGGGTGCCGTTGGAGGTGATGCGCGCAGAACCAGAG
GGCAACCGTCCATTCTATGGCCAAGCGAGAAACACGGGCCTCTTTACTCG
GGCGCCGCCGCTGCTGTCTTATCGGACGCCTCGAGCGATCGGGCTGTTGC
ATCCTGAGCAAGACGGCAACGGCGCCAACAGCGAGTTCTTCTGGTTGCAG
CGTGACGCCCGATGTGTGGAAACGGCTAAGTCGTTGGATGGAAAGTTTAC
ATTGATTGGATACGTGGTGGGAGGCGGGAGAGAAAACGACATCCTTCCGT
TCCTGGACGATAGCTTTCAGATCGAGTCGGTGCAAGTGTCATGGGGTTAC
GACCATCTCGTGCGCTCCCGCGTGGGTTTCATCGACATTCTTTTGCAGGG
GGACGAGTAA
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Synonyms
Publications