rna883, rna883 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna883
Unique Name	rna883
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2268
Alignment location	CM002456.1:638331..639853 -

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Properties


Property Name	Value
Product	pseudouridine synthase
Orig transcript id	gnl\|cribi\|Naga_100017g77.351.mrna
Orig protein id	gnl\|cribi\|Naga_100017g77.351
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:638331..639853 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100017g77	gene846	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna883	rna883-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29853.1	cds883	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:638331..639853-
coding sequence from alignment at CM002456.1:638331..639853-

mRNA sequence

>rna883 ID=rna883|Name=rna883|organism=Nannochloropsis gaditana|type=mRNA|length=2268bp
CTAAACGAGTTGCAAGGAAATAACCTCCCCACCCCCTTGTTGCCGAACCG
CTCGCTTGCACAAAGAATAGGACGCCTGTTTCTATTTATGCGTACTCCAT
CCGTGGAGGAATGAACAAAAATGCGAGAGTTTAAGAGGTTTGATAGCATG
AAAATATGTTGGGGGGCAATGTTTGAGCTTTCGACGTACTTGGGGCAATG
CACGAAGTATCCAGCACGCTGACCTATCCCTCCCTCTGAATCAGCACGGA
CACAGCAGTAGCAGGCGCGGGCATCCCTCACCCTTAGGTTCTGCCAAGAC
GACACACATGCATGTGAGAAGAAGACAGCAACTGGGTTACCCTACCTCTT
TCTGGTCGTTCCCGTCGTTCTTTCGCGTGATAGTGGTCGTCATGTACGCT
TCCTCCACGAGCGCACTGCGGAGGAAAAGTGCTGCATTTGTTTTTCCTGG
TGCCCGTGGCTACATCCCTCGCTTGCGATCACATTCTTCACTGCTTTTTA
ATGAGCGTCGATTCTTTTCGACTTCGGTCAGCGCGGCCGCTACTGTAAAA
GACTCACCTGGTTCCAACTCCAAGAAAACTGGATACTACGTCACGACGCC
TATCTACTATGTCAACGATAAGCCTCACATAGGGCATGCGTACACAACCC
TGGCTTGCGATGTGATTGCTCGATTTATGCGCTTGGACGGGCGTGACGTA
TTTTTCCTGACAGGCACAGATGAGCACGGGCAGAAAGTCGAACAATCAGC
AGCCAAGGCGGGCAAGTCTCCTCAGACATTTGTGGACGAAGTCTCCCAAA
ACTTCCGCTCCCTCGCCAAGATCATGGAATTCACCAATGACAAGTTCATT
CGCACCACCCAAGCTGACCACAAGGCGGCCGTACAAGCCTTGTGGAAACA
ACTGGAGGCCGCCGGTCACATCTATCTGGGCGCCTACGAGGGGTGGTACT
CGGTGAGGGACGAGGCCTATTACACGGAGAGCGAGTTGGTGGACGGCAAA
GCACCGACTGGTGCGGAGGTCGTGTGGGTGGTGAAGGAACCAAGCTACTT
CTTCAAGCTGTCCGCTTGGCAGGAGCCGCTTTTGGAGTTTTACGCGGCCC
ACCCCAACTTCATCGCCCCTGAGAGTCGGCGAAACGAGGTGATCAGCTTC
GTCAAGGGGGGGCTCAAAGACCTCTCTATCTCCCGCACCACGTTCAAATG
GGGCGTGCCCGTGCCGGAGGACGACGATCACGTCATGTACGTGTGGATGG
ACGCGCTCACCAACTACATTTCCGCCCTAGGCTACCCGGAGGCCAAGGGA
AGCAGCCCCACGCCCTATCAGCGTTTCTGGCCTGCGGACCTGCACGTGGT
GGGCAAGGACATCCTACGCTTCCACGCCGTCTACTGGCCCGCCTTCCTCA
TGGCGGCCGGCCTGGCCCCGCCCCGGCGCATCTTCGCGCACGGGTGGTGG
ACCAAGGACCGGCAGAAGATCTCCAAGAGCTTGGGAAATGTGATCGACCC
CGTGCGCCTGGTTGAGCAGTTCGGGCTGGACCCGACGCGCTACTTCCTCA
TGAGCGAGGTGCCCTTCGGCAACGACGGGGACTTCTCGAACGACGCCTTC
GTCCGCCGCGTCAACAACCAGCTGGCGAACGAGCTGGGCAACCTCTTTCA
AAGGTCTCTGGCCTTCATCGCCAAGAACTGCGAGGGCCAAGTCCCGGAGC
CCACCAGCGCCTTGACAGAGGCGGACGTGGCCATGCTGCGCTCGGCACGG
GGCCTCCTGGAGACGGTGCGGCCTCTGGTCAGGGACGAGCAGGCCTTGCA
CCGGTATTCGGAGGCTCTGAATCGGGTCGTGAACGAGGGCAACCGGTACT
TCGACGAGCAGGCGCCCTGGACGCTGCGGAAGACGGACAAGGACCGCATG
GCCACGGTGCTGTACGTGACCGTCGAGGCTCTGCGCTCTGTTGCCTTGCT
CTACCAGCCGCTCATCCCTGCCTCCGCTTCCAAGCTCTTGGACCTCCTGG
CGGTGCCCTCGGAACGAAGGACGTTCGCAGACGTTGGTGCAGACGCGGCT
TTGACGCCTGGGACGCCCCTCCCGAAGCCCGAAGGCGTCTTCCCTCGGGT
CGAGGACCCTGACGCGCCCAAAGATGGCGCTGCATCTCCGGCGAAACAAA
AACAACATAAGAAGACAAAAGCACCATAAGAGGTCAAGGGGGAAGGTGCA
TAGTGTGCAACAACAGCATTAACGTCAAAGAAAACTGCACGTTCAAGCCC
GCGTGAACCTGCCGGTCT

protein sequence of rna883

>rna883-protein ID=rna883-protein|Name=rna883|organism=Nannochloropsis gaditana|type=polypeptide|length=367bp
MHSTYTGIQARAWAEHCIVGSVSASRLTGRPTSPPTLVGVLGVLLPQSKL
SSRATWMDAPRNSILYKIFLLLFALHMLSRSWAWVTGAFPPLLRTRSCPY
GSSSMAIQGFRPGDGKEGIEAHIKAMEGFELQILYDDTDVIVVTKPAGSL
CVPGRFIQDSLVVRVAAHAKIKDFARMVVHRLDQGTSGVLVFARNDAALK
NLHAQFRPEAKRMTGNGNEGMQKRYVALVEGNMDAFEGKIELPLSKDTDN
PPKQMVDFAAGKASMTRYRVRRSGVDRNLVGLEPVTGRTHQLRVHLSCIG
NPILGDPFYAPLRVQEKAPGGRLCLHAESLSFRHPRTQERLTFTSPYPRE
WDGGLEDVRESLEDGPV

mRNA from alignment at CM002456.1:638331..639853-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna883 ID=rna883|Name=rna883|organism=Nannochloropsis gaditana|type=mRNA|length=1523bp|location=Sequence derived from alignment at CM002456.1:638331..639853- (Nannochloropsis gaditana)
ATCAACCGCCCAGGCCTCCAGTGTCTTCTCACCCCAAAAGTCAGCAGGAA
GGCGTCGCCCCCTACTTCTGCACGTCACACAGTCATTAGTCAGGGTGAAA
TGGTGAGTTTGGGTTGACAGTGAAAGCGGCGAGGCTGCAGCAAGGCGCTC
GGCCTCTTGCCTGTTTCCATTCCACGCATGCGTCCTGTTTCACAGGCGAA
ACCTTGAAAGTCTATACACATGCTTATCCTATGAGGAAGTCGACCATAAT
CATCCTTTAGCACTCGACATACACAGGGATACAAGCACGTGCCTGGGCCG
AACACTGCATTGTTGGGAGTGTGTCGGCATCACGTCTGACAGGCCGGCCA
ACCTCCCCCCCAACTTTAGTAGGAGTACTAGGAGTGCTACTCCCCCAGTC
AAAGCTTTCTTCTCGCGCCACTTGGATGGACGCCCCGCGTAACAGTATAC
TATACAAGATTTTCTTGCTTCTATTCGCGCTCCATATGCTTAGCCGCTCT
TGGGCCTGGGTGACGGGAGCTTTCCCTCCACTCCTTCGAACGAGGAGCTG
TCCCTATGGTAGCAGTAGTATGGCCATCCAGGGGTTTCGGCCGGGCGACG
GAAAGGAAGGCATCGAAGCCCACATCAAGGCCATGGAGGGCTTCGAGCTT
CAGATATTGTACGACGACACGGACGTGATCGTGGTCACGAAGCCAGCGGG
AAGCTTATGCGTGCCTGGACGTTTTATTCAGGACTCCTTGGTGGTGCGAG
TAGCAGCACACGCCAAGATCAAGGACTTTGCGCGTATGGTTGTCCATCGG
TTAGACCAGGGAACGTCAGGAGTCTTGGTCTTCGCCAGGAATGATGCTGC
GTTAAAAAACTTGCACGCTCAGTTCAGACCTGAGGCGAAACGAATGACGG
GAAACGGGAATGAAGGTATGCAAAAGCGATATGTGGCATTGGTGGAGGGG
AACATGGACGCTTTCGAGGGAAAAATCGAACTACCACTGAGCAAAGATAC
GGACAACCCGCCCAAGCAAATGGTGGACTTCGCCGCGGGAAAAGCCTCCA
TGACACGATACCGGGTGCGCAGGAGCGGGGTCGATCGAAACCTGGTGGGC
CTTGAGCCGGTCACTGGCCGCACTCATCAACTGCGCGTCCATTTGAGCTG
CATCGGCAACCCAATTCTGGGGGACCCTTTCTACGCCCCATTGCGTGTGC
AGGAAAAGGCTCCGGGCGGACGTCTATGTCTTCATGCGGAGTCCCTGTCT
TTCCGGCATCCGCGAACGCAGGAACGTCTTACGTTCACGAGCCCCTACCC
CCGAGAGTGGGATGGCGGCCTAGAGGACGTCCGAGAATCGCTTGAGGATG
GTCCTGTTTGAATTTCAAATTGATACATGAATGTTCCCTTTGGAAAAAAA
AGTACAACTAGTATCTGCTATATGTAGTCGATCAGAAGACCGGCAGGTTC
ACGCGGGCTTGAACGTGCAGTTTTCTTTGACGTTAATGCTGTTGTTGCAC
ACTATGCACCTTCCCCCTTGACC

Coding sequence (CDS) from alignment at CM002456.1:638331..639853-

>rna883 ID=rna883|Name=rna883|organism=Nannochloropsis gaditana|type=CDS|length=2208bp|location=Sequence derived from alignment at CM002456.1:638331..639853- (Nannochloropsis gaditana)
CACTCGACATACACAGGGATACAAGCACGTGCCTGGGCCGAACACTGCAT
TGTTGGGAGTGTGTCGGCATCACGTCTGACAGGCCGGCCAACCTCCCCCC
CAACTTTAGTAGGAGTACTAGGAGTGCTACTCCCCCAGTCAAAGCTTTCT
TCTCGCGCCACTTGGATGGACGCCCCGCGTAACAGTATACTATACAAGAT
TTTCTTGCTTCTATTCGCGCTCCATATGCTTAGCCGCTCTTGGGCCTGGG
TGACGGGAGCTTTCCCTCCACTCCTTCGAACGAGGAGCTGTCCCTATGGT
AGCAGTAGTATGGCCATCCAGGGGTTTCGGCCGGGCGACGGAAAGGAAGG
CATCGAAGCCCACATCAAGGCCATGGAGGGCTTCGAGCTTCAGATATTGT
ACGACGACACGGACGTGATCGTGGTCACGAAGCCAGCGGGAAGCTTATGC
GTGCCTGGACGTTTTATTCAGGACTCCTTGGTGGTGCGAGTAGCAGCACA
CGCCAAGATCAAGGACTTTGCGCGTATGGTTGTCCATCGGTTAGACCAGG
GAACGTCAGGAGTCTTGGTCTTCGCCAGGAATGATGCTGCGTTAAAAAAC
TTGCACGCTCAGTTCAGACCTGAGGCGAAACGAATGACGGGAAACGGGAA
TGAAGGTATGCAAAAGCGATATGTGGCATTGGTGGAGGGGAACATGGACG
CTTTCGAGGGAAAAATCGAACTACCACTGAGCAAAGATACGGACAACCCG
CCCAAGCAAATGGTGGACTTCGCCGCGGGAAAAGCCTCCATGACACGATA
CCGGGTGCGCAGGAGCGGGGTCGATCGAAACCTGGTGGGCCTTGAGCCGG
TCACTGGCCGCACTCATCAACTGCGCGTCCATTTGAGCTGCATCGGCAAC
CCAATTCTGGGGGACCCTTTCTACGCCCCATTGCGTGTGCAGGAAAAGGC
TCCGGGCGGACGTCTATGTCTTCATGCGGAGTCCCTGTCTTTCCGGCATC
CGCGAACGCAGGAACGTCTTACGTTCACGAGCCCCTACCCCCGAGAGTGG
GATGGCGGCCTAGAGGACGTCCGAGAATCGCTTGAGGATGGTCCTGTTTG
AATGCACTCGACATACACAGGGATACAAGCACGTGCCTGGGCCGAACACT
GCATTGTTGGGAGTGTGTCGGCATCACGTCTGACAGGCCGGCCAACCTCC
CCCCCAACTTTAGTAGGAGTACTAGGAGTGCTACTCCCCCAGTCAAAGCT
TTCTTCTCGCGCCACTTGGATGGACGCCCCGCGTAACAGTATACTATACA
AGATTTTCTTGCTTCTATTCGCGCTCCATATGCTTAGCCGCTCTTGGGCC
TGGGTGACGGGAGCTTTCCCTCCACTCCTTCGAACGAGGAGCTGTCCCTA
TGGTAGCAGTAGTATGGCCATCCAGGGGTTTCGGCCGGGCGACGGAAAGG
AAGGCATCGAAGCCCACATCAAGGCCATGGAGGGCTTCGAGCTTCAGATA
TTGTACGACGACACGGACGTGATCGTGGTCACGAAGCCAGCGGGAAGCTT
ATGCGTGCCTGGACGTTTTATTCAGGACTCCTTGGTGGTGCGAGTAGCAG
CACACGCCAAGATCAAGGACTTTGCGCGTATGGTTGTCCATCGGTTAGAC
CAGGGAACGTCAGGAGTCTTGGTCTTCGCCAGGAATGATGCTGCGTTAAA
AAACTTGCACGCTCAGTTCAGACCTGAGGCGAAACGAATGACGGGAAACG
GGAATGAAGGTATGCAAAAGCGATATGTGGCATTGGTGGAGGGGAACATG
GACGCTTTCGAGGGAAAAATCGAACTACCACTGAGCAAAGATACGGACAA
CCCGCCCAAGCAAATGGTGGACTTCGCCGCGGGAAAAGCCTCCATGACAC
GATACCGGGTGCGCAGGAGCGGGGTCGATCGAAACCTGGTGGGCCTTGAG
CCGGTCACTGGCCGCACTCATCAACTGCGCGTCCATTTGAGCTGCATCGG
CAACCCAATTCTGGGGGACCCTTTCTACGCCCCATTGCGTGTGCAGGAAA
AGGCTCCGGGCGGACGTCTATGTCTTCATGCGGAGTCCCTGTCTTTCCGG
CATCCGCGAACGCAGGAACGTCTTACGTTCACGAGCCCCTACCCCCGAGA
GTGGGATGGCGGCCTAGAGGACGTCCGAGAATCGCTTGAGGATGGTCCTG
TTTGAATG

Synonyms

Publications