rna833, rna833 (mRNA) Nannochloropsis gaditana

Overview
Namerna833
Unique Namerna833
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length995
Alignment locationCM002456.1:525324..527349 -

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Properties
Property NameValue
Productstress-inducible protein sti1
Orig transcript idgnl|cribi|Naga_100017g24.281.mrna
Orig protein idgnl|cribi|Naga_100017g24.281
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:525324..527349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100017g24gene797Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna833rna833-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29783.1cds833Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna833 ID=rna833|Name=rna833|organism=Nannochloropsis gaditana|type=mRNA|length=995bp
ATGTATGCAAGCGCGAGCAGCTAATTCGACACGTTACACATATGACTCAT
ATTCTAAAGGTTCCGGATGTTGTCCATCGACCGACTGCAAAAATGCTTGG
ATTTTAATTTTCCCGCTGCAGCCGCCAATCCTGCTTTCCATACCAATAGG
GGTGTGGGTCGCATAGGCCTGGCTGGATTTCTTCTCGGAGGGCTTTGGGG
AGCGCATTTGGTCCTCTTCTTTGCTGCTTTACTCGGCAATGACAACAAGC
TATGGCTGGTGCGGTGGAGCGCATACATGGTCTCCCTGTTTTGCTTCCAT
TTCATGGAGTTTTTGAGTACAGCACTTTACAAACCTGAGTCTGTTACATA
TGATTCCTACATGATAAATCACTCCAAGGAATATACTGTTGCAGCATTGG
CCGCATGGGCCGAATTCTGGCTGGAGCTTTGGTTTTTCCCGGACCTCAAG
ATTTCTGGCTCTTTTACCTGCCTTCTTGGTCTGCTCTTTCTTGTTGGAGG
ACAAGCCTGTCGGATCGTTGCCATGCACACGGCCCGGGGTCACTTTTCGC
ACACAATCATGGAAACGCGACAAAAGGACCATCAACTTGTGACGCATGGC
ATTTATCGCTTTCTCCGACATCCTTCCTATTGTGGATGGTTCTGGTGGGT
GGTCGGCACTCAAATTCTTCTGTGCAACCCTCTTTGCGCACTTATTTATG
CTTTGGTGAGCTGGCGCTTCTTCGCAGCAAGAATAAAGTACGAAGAGGGG
ACTTTGAAAACTTTTTACCCTCAAGAGTATCCAAGCTACTGTCGGCAGAC
GGTGGTAGGGATCCCCTTCATTTCATGATGGGCATGCTGAATAAGAGATG
AGAAGCGCAAAGCGGGAGCGCCAAAAAAGCCATGCGGCGATGCACCAGCG
CGATATCAACATCTGTCATGTTTTGTGGGATGCTTCATACGACGTTCAGA
GAAAGGATCAATCGGGAAAAGACCGCCCACTCAGCACCTTGCCTT
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protein sequence of rna833

>rna833-protein ID=rna833-protein|Name=rna833|organism=Nannochloropsis gaditana|type=polypeptide|length=326bp
MQRLSDENHLSPLYLLPSLGNQAFKAGNYAKAIEHYSEALKLDATAHTYW
SNRSASYAGLGDWENAANDAAECVKANKKFVKGYFRLALAQKNLQRYDQA
LDTIMKGLGIDFGNSDLKSMKKEIEDAVRLQKVASYVETAKQQFASRDYG
ACLSTIESGLRIDAGNAALVALKGKVQPLWEQKERARKAGLSPVEKMKEE
GDALYKDANFEAAIAQYSKTLDKMDDQTSDFAMKVLSNRAACHKQLSNFD
GVISDCTSVLEVRPDDVKSLLRRAQAFEAVERYKMALQDVRTLLALPADV
VGPSNTSIANGLQHRLNRVIQKLRDG
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mRNA from alignment at CM002456.1:525324..527349-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna833 ID=rna833|Name=rna833|organism=Nannochloropsis gaditana|type=mRNA|length=2026bp|location=Sequence derived from alignment at CM002456.1:525324..527349- (Nannochloropsis gaditana)
ACCACAGCCTTCTTTGCTTCCGTGTTCCAGAAGGCCCGCCGCCTGGGCCG
GAAAAGCAGGAATATGCCCGACTGTTGTGGACACTTGGGCGTCTTAAGGA
CGCGATTGGTGCCTTTGTCGCGAGTTATGGCCGCACTTTTCTTCTTCACG
TCGGTCCTTTTTTTTTTTTGCCTCTTACCCACTTCCACCCAGTTCGTCAC
TTTTTGCTCGTCGTCCACAAACCACAAGTCAAATAATGCCTGTTCCTGCG
GCCGAGGAAAAGAAAAGGTGAGAAATACACTACGAAGCAGCTTACGTCAG
ATTGAGCACCCTTTTCCCCCTTTTTTGTGCGCCTGACGGATTCCCCGAAT
GAGAAGAGTCAGAAGTCTTACCTCCTTTCTCAGAACCATTCAGCTTTTGC
CCATAGCAATGTTGTAACCATCCGTATCTCACCAAGCATGCAACGATTGT
CTGACGAAAATCATTTATCACCCCTCTATCTTCTCCCCAGCTTGGGCAAT
CAAGCTTTTAAAGCTGGCAATTACGCGAAAGCCATCGAACATTACTCGGA
GGCCTTGAAACTCGACGCGACCGCACACACGTACTGGTCGAATCGAAGTG
CTTCCTACGCGGGCCTTGGAGACTGGGAGAACGCTGCAAACGATGCCGCA
GAGTGTGTGAAAGCCAATAAAAAATTTGTCAAGGGCTATTTCCGCTTGGC
TTTGGCGCAGAAAAATCTGCAACGGTACGACCAAGCATTGGACACGATCA
TGAAGGGCTTGGGCATTGATTTTGGAAACAGCGACTTGAAAAGCATGAAG
AAAGAGATAGAGGATGCGGTGCGACTACAGAAAGTCGCCTCGTATGTGGA
GACGGCCAAGCAGCAGTTCGCAAGCAGAGACTACGGTGCCTGCCTGAGCA
CCATCGAAAGCGGGCTGCGCATCGACGCCGGGAACGCTGCTTTGGTGGCT
TTGAAGGGAAAGGTTCAGCCCCTGTGGGAACAGAAGGAGAGGGCGCGAAA
GGCGGGTTTGAGTCCCGTCGAGAAAATGAAAGAAGAGGGAGATGCCCTTT
ACAAGGACGCCAACTTCGAGGCGGCCATCGCGCAGTATAGCAAGACCCTG
GACAAGATGGACGACCAGACCTCCGATTTCGCCATGAAAGTCCTGTCGAA
TCGGGCAGCCTGCCACAAGCAGCTCTCCAACTTTGACGGAGTCATATCGG
ACTGCACGTCCGTGCTGGAGGTGCGCCCGGATGACGTGAAGTCTCTCTTG
CGGCGGGCACAGGCCTTCGAGGCAGTGGAACGGTACAAGATGGCGCTGCA
GGACGTGCGAACGCTTTTGGCACTGCCGGCCGATGTGGTGGGCCCTTCGA
ACACTTCGGTGGGTGCTTTCAAAGGATGGAGGGGAATCTACAAGGACGGC
TATGCGCCTGTTTTTCGGGCCATGACCCTAGTGGTGCCTGTGCAACGATT
CGGCTGTTTCAGTCGGTCGTGCCGTAACGTCATCGTGTCCATTCCCTCAC
GACGGTCGCTATCTTCTTTTTTTCTCATGTTCGCCTTCACTTGCAACTTA
CAGATCGCTAACGGGTTGCAGCATCGACTGAACCGGGTAATTCAAAAGCT
GCGTGACGGTTGAAACATGCGTCTGGCGCCCGGGAATCCTTCCCGAATCT
CTCCCCCCAACAATAGCCTCCTCTTTATTTTAATGTGCTCTCTATCTCGG
AGAACCTCCATCGTACGCCTTATGCCATAATTTTGAAGCAACGTTTCGCG
TTTCGTACCGAAAAAAAATGCCCAACTTACCGGTGAAGAGATTGGTAATA
ATCGCGAAGTCGGAAAAGAAGAAATTCACAGAATCTGGCAAGACGACGAA
GTTTCCTTGTCTATCGCGAAGGGATTTGCGGGAACGTAGTCGATTCGTCT
TACTCGTGATCGTGACGCTGGGTGGGTCTTGTTGGTCTTCGTCGTGTGAG
CAGGAGCGACATGAAAACTGGGGTGGGCCATTAAATTCACTTGCAGCGCA
TCAAAAATGAGCTCACACATGAATCT
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Coding sequence (CDS) from alignment at CM002456.1:525324..527349-

>rna833 ID=rna833|Name=rna833|organism=Nannochloropsis gaditana|type=CDS|length=1962bp|location=Sequence derived from alignment at CM002456.1:525324..527349- (Nannochloropsis gaditana)
ATCGCTAACGGGTTGCAGCATCGACTGAACCGGGTAATTCAAAAGCTGCG
TGACGGTTGAATGCAACGATTGTCTGACGAAAATCATTTATCACCCCTCT
ATCTTCTCCCCAGCTTGGGCAATCAAGCTTTTAAAGCTGGCAATTACGCG
AAAGCCATCGAACATTACTCGGAGGCCTTGAAACTCGACGCGACCGCACA
CACGTACTGGTCGAATCGAAGTGCTTCCTACGCGGGCCTTGGAGACTGGG
AGAACGCTGCAAACGATGCCGCAGAGTGTGTGAAAGCCAATAAAAAATTT
GTCAAGGGCTATTTCCGCTTGGCTTTGGCGCAGAAAAATCTGCAACGGTA
CGACCAAGCATTGGACACGATCATGAAGGGCTTGGGCATTGATTTTGGAA
ACAGCGACTTGAAAAGCATGAAGAAAGAGATAGAGGATGCGGTGCGACTA
CAGAAAGTCGCCTCGTATGTGGAGACGGCCAAGCAGCAGTTCGCAAGCAG
AGACTACGGTGCCTGCCTGAGCACCATCGAAAGCGGGCTGCGCATCGACG
CCGGGAACGCTGCTTTGGTGGCTTTGAAGGGAAAGGTTCAGCCCCTGTGG
GAACAGAAGGAGAGGGCGCGAAAGGCGGGTTTGAGTCCCGTCGAGAAAAT
GAAAGAAGAGGGAGATGCCCTTTACAAGGACGCCAACTTCGAGGCGGCCA
TCGCGCAGTATAGCAAGACCCTGGACAAGATGGACGACCAGACCTCCGAT
TTCGCCATGAAAGTCCTGTCGAATCGGGCAGCCTGCCACAAGCAGCTCTC
CAACTTTGACGGAGTCATATCGGACTGCACGTCCGTGCTGGAGGTGCGCC
CGGATGACGTGAAGTCTCTCTTGCGGCGGGCACAGGCCTTCGAGGCAGTG
GAACGGTACAAGATGGCGCTGCAGGACGTGCGAACGCTTTTGGCACTGCC
GGCCGATGTGGTGGGCCCTTCGAACACTTCGATCGCTAACGGGTTGCAGC
ATCGACTGAACCGGGTAATTCAAAAGCTGCGTGACGGTTGAATGCAACGA
TTGTCTGACGAAAATCATTTATCACCCCTCTATCTTCTCCCCAGCTTGGG
CAATCAAGCTTTTAAAGCTGGCAATTACGCGAAAGCCATCGAACATTACT
CGGAGGCCTTGAAACTCGACGCGACCGCACACACGTACTGGTCGAATCGA
AGTGCTTCCTACGCGGGCCTTGGAGACTGGGAGAACGCTGCAAACGATGC
CGCAGAGTGTGTGAAAGCCAATAAAAAATTTGTCAAGGGCTATTTCCGCT
TGGCTTTGGCGCAGAAAAATCTGCAACGGTACGACCAAGCATTGGACACG
ATCATGAAGGGCTTGGGCATTGATTTTGGAAACAGCGACTTGAAAAGCAT
GAAGAAAGAGATAGAGGATGCGGTGCGACTACAGAAAGTCGCCTCGTATG
TGGAGACGGCCAAGCAGCAGTTCGCAAGCAGAGACTACGGTGCCTGCCTG
AGCACCATCGAAAGCGGGCTGCGCATCGACGCCGGGAACGCTGCTTTGGT
GGCTTTGAAGGGAAAGGTTCAGCCCCTGTGGGAACAGAAGGAGAGGGCGC
GAAAGGCGGGTTTGAGTCCCGTCGAGAAAATGAAAGAAGAGGGAGATGCC
CTTTACAAGGACGCCAACTTCGAGGCGGCCATCGCGCAGTATAGCAAGAC
CCTGGACAAGATGGACGACCAGACCTCCGATTTCGCCATGAAAGTCCTGT
CGAATCGGGCAGCCTGCCACAAGCAGCTCTCCAACTTTGACGGAGTCATA
TCGGACTGCACGTCCGTGCTGGAGGTGCGCCCGGATGACGTGAAGTCTCT
CTTGCGGCGGGCACAGGCCTTCGAGGCAGTGGAACGGTACAAGATGGCGC
TGCAGGACGTGCGAACGCTTTTGGCACTGCCGGCCGATGTGGTGGGCCCT
TCGAACACTTCG
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Synonyms
Publications