rna822, rna822 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna822
Unique Name	rna822
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1499
Alignment location	CM002456.1:503059..505264 -

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Properties


Property Name	Value
Product	homocysteine s-methyltransferase
Orig transcript id	gnl\|cribi\|Naga_100017g12.328.mrna
Orig protein id	gnl\|cribi\|Naga_100017g12.328
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:503059..505264 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100017g12	gene787	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna822	rna822-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29830.1	cds822	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:503059..505264-
coding sequence from alignment at CM002456.1:503059..505264-

mRNA sequence

>rna822 ID=rna822|Name=rna822|organism=Nannochloropsis gaditana|type=mRNA|length=1499bp
AGGAGCGTTGTTTTCCTACGCGGCCTATGCGATGCGACCTGAAGCAAGGC
AAACATCCTATGATGGTCTTATTCGCATCATTAATACCTCTCTCATTCGA
AGGCAGGTCGACTAGAAATGAGCATTTCACCACGGCCGCAGGGAGGGTCC
CTCCTGCTCGCCGTGTCCGTGCTTTTCCTGAGCAACGGTCTGCAAGCAGC
CCTTGCATTCTCTCCTATATTGCGAAGTGCCGTTGGCCACGACAAAATAC
AATCCTTTGTGGTGCAGGAATCCCGCTGGTCGACCTTATCTCCGCTCTTT
GCCGGGTCCATTGACGGCTCCAAAATCGTCAATCCTGATCACGACATCCT
GCTTCGCGTGGCTCGAGGGGAGCAGACCCATCGCACCCCCGTGTGGCTAA
TGCGTCAGGCTGGACGATATATGGCTGCTTTTCGAGAATACAGCGAAAAA
TATCCTTTCAGACAGCGTTCTGAGACCCCGTCTATGGCAATCGAGTTGTC
GATGCAACCTTTGGAGGCCTTCGGGGTTGACGGGGTCATCATGTTCTCAG
ACATCCTCACTCCCTTGCCAGCGTTGGGTATAGAGTTTGACGTGATCTCA
GGCAAAGGTCCTGTCATTCCTAATCGGATCGCAACAGCTATGGACGTGGA
CAACGTCCGGCGGCTGGATGATCCGGCTAGCAGTTTACCCTTTGTAGGGG
AGACGCTGCGCACGTTGAAAAACGAGGTGGCGGGAAGAGCCACGTTGCTG
GGTTTCGTAGGCGCACCTTTCACTTTAGCGGCGTACACCATTGAAGGTGG
CTCCAGCAAAAACTGTCTGAAGACGAAGCGAATGATGATGTACGACCCCA
CACTCTTGCACGTCTACTTGGACAAGCTTGCCACGGCCATCGGAGACTAC
GCTTGCTACCAGATCGAGAACGGCGCTGAAGTGATCCAAGTGTTCGAGTC
TTGGGCACACCAGCTGTCCCCCTCGCAGTTCCTGAAATACAGCAAGCCGT
ATGCTGACAAGGTCACCACCATCGTCAAAGAAAGACACCCGGAGGTACCC
ATCATCTTCTTCGGTCACGGGGCCAGCAGCTTCTTGGAGCTGCAGGGTGA
CATGGCGGCGGACATGATATGCCTTGACTGGCAAGTGGACATGGCCACAG
CGCGCAGGACGCTGGGTGCCAAGCCCGTCTCTGGAAATGTAGACCCGACC
GTGCTGTTAGGCCCCCCGGAGGGTATCGTGGCCGCGGTGGACGAGTGCGT
GCGGAAGGCGGGAGGAGGGGGCCACATTTTGAACCTGGGCCACGGGGTCA
TCAAGACGACGCCCGAGGACGCGGTGCGTCTCTTTGTCGACACGGCCAAG
AGCATCGAATTGAAGGCGGCCAGTAGGGAAAGCGGGAGTGATGGCCCCCC
ACCAAGTAGTTTGGTGAGGCCAGCATTGGCGGGAGCAGGGGCGTGATGAT
GTGCAGGCAAGAAGAACGAAACCAAAAAATACAACACGGAAAAACTTCG

protein sequence of rna822

>rna822-protein ID=rna822-protein|Name=rna822|organism=Nannochloropsis gaditana|type=polypeptide|length=493bp
MRDESSHNPLAAMLAHQNCIISDGGMGTLLEAYIGAPLDSKLWSAGCLRT
HPSAIKAVHRQYFEAGADIATAATYQASLEGFMSSAGVRVTRAQAEDLIR
KGVALAIEARDEFWAAYSREEAGKRKTEEAGGGTRQRPLVAASVGCYGAA
QADGSEYRGAYGLTVEEVSREIVPALDVLLPSRTSSPCMRPHAPFCSSPC
MRPHVPLLQLTLYASSCPLLQLTLYASSCPLLQLTLYASSCPLLQLTLYA
SSCPLLQLTLYASSCPLLQLTLYASSCPNLQLTLYASSCPLLQLMDWHRP
RLAILGETDADLLAFETIPCQAEVVAILQLLREGREQEGSAPTSRRTPCW
ITLACQDATHLNSGESLVSCVQLVKALDTGSRPQVVGLGVNCCAPQHVEG
ALTVLREGLLTISAAKEVISAAKGSERILIAYPNSGEVWQDKRWLPGTGV
CPSSRDFADLARKWVVAGARVLGGCCRTTPETIKALRACLLAK

mRNA from alignment at CM002456.1:503059..505264-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna822 ID=rna822|Name=rna822|organism=Nannochloropsis gaditana|type=mRNA|length=2206bp|location=Sequence derived from alignment at CM002456.1:503059..505264- (Nannochloropsis gaditana)
CGGGCTTGAATGGGAATACATCACTTTTACGCGTTCTCGGGGCTATATCT
CCTCTTTTCCAGGTATCTCTCAATCCAAATACACAAGTTATGTGGCAAAA
TGGGCTTTCGCGTTGGAAAGCTCACGATTTAAGAGAGTCGAAGGAGCTGA
AGCCAGAGTAAGGCGAGTAGCTTACATTGGTTAAAAAGGTGCCACTCTTG
TCAATTGAGATGCGCGATGAATCATCACACAACCCTTTAGCTGCCATGCT
GGCCCATCAAAATTGCATCATTAGTGATGGGGGCATGGGCACGCTTCTGG
AGGCCTACATCGGTGCACCCTTGGATTCTAAATTGTGGTGAGTTATCACA
TCCCATGTCGCAGTCGTAGAAAGCCTTCAAGCACGCACATTCCCCAGAAA
TTGTTTTCTACCACGCTGTGGCTTATTCACAGGTCGGCGGGGTGTTTGCG
CACCCACCCTTCAGCCATCAAAGCCGTGCATAGGCAATACTTCGAAGCTG
GTGCGGACATAGCAACAGCGGCGACGTACCAGGCCAGCTTGGAGGGGTTC
ATGAGCTCAGCAGGTGTCCGTGTCACCCGAGCGCAAGCCGAGGATTTGAT
CCGTAAAGGAGTGGCACTGGCAATTGAGGCCCGTGACGAATTTTGGGCGG
CGTATTCACGTGAAGAAGCAGGGAAAAGGAAGACCGAGGAGGCGGGGGGA
GGGACACGGCAACGGCCATTGGTGGCGGCCAGCGTGGGGTGCTACGGAGC
GGCCCAAGCCGATGGCTCCGAATATCGTGGAGCATACGGCTTGACGGTGG
AAGAGGTGAGTCGAGAGATTGTCCCTGCCTTGGACGTGCTTTTGCCAAGT
CGCACCAGCTCACCTTGTATGCGTCCTCATGCCCCCTTCTGCAGCTCACC
TTGTATGCGTCCTCATGTCCCCCTTCTGCAGCTCACCTTGTATGCGTCCT
CATGCCCCCTTCTGCAGCTCACCTTGTATGCGTCCTCATGCCCCCTTCTG
CAGCTCACCTTGTATGCGTCCTCATGCCCCCTTCTGCAGCTCACCTTGTA
TGCGTCCTCATGCCCCCTTCTGCAGCTCACCTTGTATGCGTCCTCATGCC
CCCTTCTGCAGCTCACCTTGTATGCGTCCTCATGCCCCAATCTGCAGCTC
ACCCTGTATGCGTCCTCATGTCCCCTCCTGCAGCTGATGGACTGGCACCG
TCCCCGCCTTGCAATCCTGGGTGAAACAGACGCTGACTTACTGGCCTTCG
AGACGATCCCTTGCCAAGCTGAGGTGGTCGCGATCCTGCAACTCCTTCGG
GAAGGACGGGAACAGGAAGGCTCAGCTCCCACCTCGAGACGCACTCCCTG
CTGGATTACCCTGGCTTGCCAAGACGCCACCCATCTCAACAGCGGCGAGT
CCCTAGTAAGCTGTGTGCAGCTCGTGAAGGCGCTGGATACGGGTTCACGG
CCCCAAGTAGTGGGGTTAGGAGTGAATTGCTGCGCGCCTCAGCATGTGGA
GGGGGCCCTTACGGTGCTACGGGAAGGCTTACTGACCATTTCCGCCGCGA
AAGAGGTCATTAGCGCAGCGAAAGGAAGTGAACGCATCCTTATCGCATAC
CCGAATTCAGGAGAGGTGTGGCAAGACAAGAGGTGGCTTCCGGGGACGGG
AGTGTGCCCCTCTTCGCGAGATTTTGCCGACTTGGCTCGTAAATGGGTGG
TGGCGGGCGCCCGCGTTCTGGGGGGATGCTGCAGAACCACGCCCGAAACT
ATAAAAGCCTTACGAGCGTGCTTGCTAGCGAAGTAGAATTCATTCTGATT
GTTGAAATTGCATGAGTTTTATTGCCAAACGGACGCTTTGTGAGGGATGG
AAATGGCCTGAGTCGAAGTAGGGGGAAAAAGGAGGGATGAATTCATTCTG
ATTGTTGAAATTGCATGAGTTTTATTGCCAAACGGACGCTTTGTGAGGGA
TGGAAATGGCCTGAGTCGAAGTAGGGGGAAAAAGGAGGAATGAATTCATT
CTGATTGTTTAAATTGCATGCGTTTAATAGCCAAACGGACACTTTGTGAG
GGATGGAAATAGCCTGAATTAGGGTTAAATTGAAAGTCTCAAAACAGTGA
ACAACTTTAAAATTTGGGGCCTTTCTATACTACTCGAGTCTTTAAAATGG
ATTGTTCAAAGTAACTTTTTTTCTTCTAAAGAAAAATCACTTCGAAAGCG
TTTTTC

Coding sequence (CDS) from alignment at CM002456.1:503059..505264-

>rna822 ID=rna822|Name=rna822|organism=Nannochloropsis gaditana|type=CDS|length=2964bp|location=Sequence derived from alignment at CM002456.1:503059..505264- (Nannochloropsis gaditana)
GTCGGCGGGGTGTTTGCGCACCCACCCTTCAGCCATCAAAGCCGTGCATA
GGCAATACTTCGAAGCTGGTGCGGACATAGCAACAGCGGCGACGTACCAG
GCCAGCTTGGAGGGGTTCATGAGCTCAGCAGGTGTCCGTGTCACCCGAGC
GCAAGCCGAGGATTTGATCCGTAAAGGAGTGGCACTGGCAATTGAGGCCC
GTGACGAATTTTGGGCGGCGTATTCACGTGAAGAAGCAGGGAAAAGGAAG
ACCGAGGAGGCGGGGGGAGGGACACGGCAACGGCCATTGGTGGCGGCCAG
CGTGGGGTGCTACGGAGCGGCCCAAGCCGATGGCTCCGAATATCGTGGAG
CATACGGCTTGACGGTGGAAGAGGTGAGTCGAGAGATTGTCCCTGCCTTG
GACGTGCTTTTGCCAAGTCGCACCAGCTCACCTTGTATGCGTCCTCATGC
CCCCTTCTGCAGCTCACCTTGTATGCGTCCTCATGTCCCCCTTCTGCAGC
TCACCTTGTATGCGTCCTCATGCCCCCTTCTGCAGCTCACCTTGTATGCG
TCCTCATGCCCCCTTCTGCAGCTCACCTTGTATGCGTCCTCATGCCCCCT
TCTGCAGCTCACCTTGTATGCGTCCTCATGCCCCCTTCTGCAGCTCACCT
TGTATGCGTCCTCATGCCCCCTTCTGCAGCTCACCTTGTATGCGTCCTCA
TGCCCCAATCTGCAGCTCACCCTGTATGCGTCCTCATGTCCCCTCCTGCA
GCTGATGGACTGGCACCGTCCCCGCCTTGCAATCCTGGGTGAAACAGACG
CTGACTTACTGGCCTTCGAGACGATCCCTTGCCAAGCTGAGGTGGTCGCG
ATCCTGCAACTCCTTCGGGAAGGACGGGAACAGGAAGGCTCAGCTCCCAC
CTCGAGACGCACTCCCTGCTGGATTACCCTGGCTTGCCAAGACGCCACCC
ATCTCAACAGCGGCGAGTCCCTAGTAAGCTGTGTGCAGCTCGTGAAGGCG
CTGGATACGGGTTCACGGCCCCAAGTAGTGGGGTTAGGAGTGAATTGCTG
CGCGCCTCAGCATGTGGAGGGGGCCCTTACGGTGCTACGGGAAGGCTTAC
TGACCATTTCCGCCGCGAAAGAGGTCATTAGCGCAGCGAAAGGAAGTGAA
CGCATCCTTATCGCATACCCGAATTCAGGAGAGGTGTGGCAAGACAAGAG
GTGGCTTCCGGGGACGGGAGTGTGCCCCTCTTCGCGAGATTTTGCCGACT
TGGCTCGTAAATGGGTGGTGGCGGGCGCCCGCGTTCTGGGGGGATGCTGC
AGAACCACGCCCGAAACTATAAAAGCCTTACGAGCGTGCTTGCTAGCGAA
GTAGATGCGCGATGAATCATCACACAACCCTTTAGCTGCCATGCTGGCCC
ATCAAAATTGCATCATTAGTGATGGGGGCATGGGCACGCTTCTGGAGGCC
TACATCGGTGCACCCTTGGATTCTAAATTGTGGTCGGCGGGGTGTTTGCG
CACCCACCCTTCAGCCATCAAAGCCGTGCATAGGCAATACTTCGAAGCTG
GTGCGGACATAGCAACAGCGGCGACGTACCAGGCCAGCTTGGAGGGGTTC
ATGAGCTCAGCAGGTGTCCGTGTCACCCGAGCGCAAGCCGAGGATTTGAT
CCGTAAAGGAGTGGCACTGGCAATTGAGGCCCGTGACGAATTTTGGGCGG
CGTATTCACGTGAAGAAGCAGGGAAAAGGAAGACCGAGGAGGCGGGGGGA
GGGACACGGCAACGGCCATTGGTGGCGGCCAGCGTGGGGTGCTACGGAGC
GGCCCAAGCCGATGGCTCCGAATATCGTGGAGCATACGGCTTGACGGTGG
AAGAGGTGAGTCGAGAGATTGTCCCTGCCTTGGACGTGCTTTTGCCAAGT
CGCACCAGCTCACCTTGTATGCGTCCTCATGCCCCCTTCTGCAGCTCACC
TTGTATGCGTCCTCATGTCCCCCTTCTGCAGCTCACCTTGTATGCGTCCT
CATGCCCCCTTCTGCAGCTCACCTTGTATGCGTCCTCATGCCCCCTTCTG
CAGCTCACCTTGTATGCGTCCTCATGCCCCCTTCTGCAGCTCACCTTGTA
TGCGTCCTCATGCCCCCTTCTGCAGCTCACCTTGTATGCGTCCTCATGCC
CCCTTCTGCAGCTCACCTTGTATGCGTCCTCATGCCCCAATCTGCAGCTC
ACCCTGTATGCGTCCTCATGTCCCCTCCTGCAGCTGATGGACTGGCACCG
TCCCCGCCTTGCAATCCTGGGTGAAACAGACGCTGACTTACTGGCCTTCG
AGACGATCCCTTGCCAAGCTGAGGTGGTCGCGATCCTGCAACTCCTTCGG
GAAGGACGGGAACAGGAAGGCTCAGCTCCCACCTCGAGACGCACTCCCTG
CTGGATTACCCTGGCTTGCCAAGACGCCACCCATCTCAACAGCGGCGAGT
CCCTAGTAAGCTGTGTGCAGCTCGTGAAGGCGCTGGATACGGGTTCACGG
CCCCAAGTAGTGGGGTTAGGAGTGAATTGCTGCGCGCCTCAGCATGTGGA
GGGGGCCCTTACGGTGCTACGGGAAGGCTTACTGACCATTTCCGCCGCGA
AAGAGGTCATTAGCGCAGCGAAAGGAAGTGAACGCATCCTTATCGCATAC
CCGAATTCAGGAGAGGTGTGGCAAGACAAGAGGTGGCTTCCGGGGACGGG
AGTGTGCCCCTCTTCGCGAGATTTTGCCGACTTGGCTCGTAAATGGGTGG
TGGCGGGCGCCCGCGTTCTGGGGGGATGCTGCAGAACCACGCCCGAAACT
ATAAAAGCCTTACGAGCGTGCTTGCTAGCGAAGTAGATGCGCGATGAATC
ATCACACAACCCTTTAGCTGCCATGCTGGCCCATCAAAATTGCATCATTA
GTGATGGGGGCATGGGCACGCTTCTGGAGGCCTACATCGGTGCACCCTTG
GATTCTAAATTGTG

Synonyms

Publications