EWM29879.1, cds793 (CDS) Nannochloropsis gaditana

Overview
NameEWM29879.1
Unique Namecds793
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:432691..433221 -
Alignment locationCM002456.1:432079..432540 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29879.1
Productcytochrome b5
Orig transcript idgnl|cribi|Naga_100106g6.1453.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:432691..433221 -
CM002456.1supercontigCM002456.1:432079..432540 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0020037heme binding
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR018506Cyt_B5_heme-BS
IPR001199Cyt_B5-like_heme/steroid-bd
Homology
BLAST of EWM29879.1 vs. NCBI_GenBank
Match: gi|585112461|gb|EWM29879.1| (cytochrome b5 [Nannochloropsis gaditana])

HSP 1 Score: 671.389 bits (1731), Expect = 0.000e+0
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0
Query:    1 MEPSELLGLVVALLALLGASALINVLFGHPTFFREADHLPSKASVPFPPPTFPTPVHSPPPSVPDRLPVHIPKELFVSEVLLFLSPYEVTRLLPTSRYFHLAGEHVTYWQHAWTRRLAGMRQPLKRRCEATRGPEELLTHECHNPKLEFFRRMFVYPYELTYAHCHTYTCRIIVHGKVYDVTSFLWAHPGGDAILLEYGGPVDATAVFELSKHSLVARERMHSQYLMWDPTPCLGRGGTIAGLLNPSMWRSAAACPAPSPSQVAQGGRFEGLLPSLLVLLTDLQRFCRGHITRRPVGATLPRLVDDRRHLNGGGDRSPPNIVKILDEAHF 330
            MEPSELLGLVVALLALLGASALINVLFGHPTFFREADHLPSKASVPFPPPTFPTPVHSPPPSVPDRLPVHIPKELFVSEVLLFLSPYEVTRLLPTSRYFHLAGEHVTYWQHAWTRRLAGMRQPLKRRCEATRGPEELLTHECHNPKLEFFRRMFVYPYELTYAHCHTYTCRIIVHGKVYDVTSFLWAHPGGDAILLEYGGPVDATAVFELSKHSLVARERMHSQYLMWDPTPCLGRGGTIAGLLNPSMWRSAAACPAPSPSQVAQGGRFEGLLPSLLVLLTDLQRFCRGHITRRPVGATLPRLVDDRRHLNGGGDRSPPNIVKILDEAHF
Sbjct:    1 MEPSELLGLVVALLALLGASALINVLFGHPTFFREADHLPSKASVPFPPPTFPTPVHSPPPSVPDRLPVHIPKELFVSEVLLFLSPYEVTRLLPTSRYFHLAGEHVTYWQHAWTRRLAGMRQPLKRRCEATRGPEELLTHECHNPKLEFFRRMFVYPYELTYAHCHTYTCRIIVHGKVYDVTSFLWAHPGGDAILLEYGGPVDATAVFELSKHSLVARERMHSQYLMWDPTPCLGRGGTIAGLLNPSMWRSAAACPAPSPSQVAQGGRFEGLLPSLLVLLTDLQRFCRGHITRRPVGATLPRLVDDRRHLNGGGDRSPPNIVKILDEAHF 330          
BLAST of EWM29879.1 vs. NCBI_GenBank
Match: gi|1175865154|ref|XP_020586418.1| (cytochrome b5-like [Phalaenopsis equestris] >gi|1175865156|ref|XP_020586419.1| cytochrome b5-like [Phalaenopsis equestris])

HSP 1 Score: 66.6254 bits (161), Expect = 5.211e-10
Identity = 33/63 (52.38%), Postives = 41/63 (65.08%), Query Frame = 0
Query:  164 HCHTYTCRIIVHGKVYDVTSFLWAHPGGDAILLEYGGPVDATAVFELSKHSLVARERMHSQYL 226
            H  T  C +I+HGKVYDVTSF+  HPGGD +LL   G  DAT  FE   HS +AR+ +H  Y+
Sbjct:   16 HNATKDCWLIIHGKVYDVTSFMDEHPGGDEVLLAATGK-DATNDFEDVGHSDIARDMIHKYYI 77          
BLAST of EWM29879.1 vs. NCBI_GenBank
Match: gi|871223682|ref|XP_005095539.2| (PREDICTED: cytochrome b5 isoform A-like [Aplysia californica])

HSP 1 Score: 67.0106 bits (162), Expect = 6.332e-10
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 0
Query:  164 HCHTYTCRIIVHGKVYDVTSFLWAHPGGDAILLEYGGPVDATAVFELSKHSLVARERMHSQYLMWDPT 231
            HCH  +C I+V+ KVYDVT FL  HPGGD I+LEY G  DAT+VF    HS  A E M ++Y + + T
Sbjct:   71 HCHYDSCWIVVNNKVYDVTRFLRQHPGGDDIILEYAG-FDATSVFIDKGHSRDAYE-MLAEYFIGEVT 136          
BLAST of EWM29879.1 vs. NCBI_GenBank
Match: gi|168024257|ref|XP_001764653.1| (predicted protein [Physcomitrella patens] >gi|162684231|gb|EDQ70635.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 66.6254 bits (161), Expect = 6.460e-10
Identity = 38/79 (48.10%), Postives = 42/79 (53.16%), Query Frame = 0
Query:  155 VYPYELTYAHCHTYTCRIIVHGKVYDVTSFLWAHPGGDAILLEYGGPVDATAVFELSKHSLVARERMHSQYLMWDPTPC 233
            VY  E    H H   C +I+ GKVYDVT FL  HPGGD +LL   G  DAT  FE   HS  AR  M   YL+ D  P 
Sbjct:   10 VYTLEEVSGHNHARDCWLIIGGKVYDVTKFLEDHPGGDEVLLSATGK-DATDDFEDVGHSTSARSMM-DDYLVGDIDPS 86          
BLAST of EWM29879.1 vs. NCBI_GenBank
Match: gi|1072904753|ref|XP_018480427.1| (PREDICTED: cytochrome b5 [Raphanus sativus])

HSP 1 Score: 65.855 bits (159), Expect = 1.111e-9
Identity = 33/72 (45.83%), Postives = 42/72 (58.33%), Query Frame = 0
Query:  155 VYPYELTYAHCHTYTCRIIVHGKVYDVTSFLWAHPGGDAILLEYGGPVDATAVFELSKHSLVARERMHSQYL 226
            +Y  E   AH     C I++ GKVYDVTS++  HPGGD +LL   G  DAT  FE + HS  ARE M   ++
Sbjct:    7 IYSMEEVAAHNKQDDCWIVIDGKVYDVTSYMDEHPGGDDVLLAVTGK-DATDEFEDAGHSKTARELMEEYFI 77          
BLAST of EWM29879.1 vs. NCBI_GenBank
Match: gi|848861099|ref|XP_012831375.1| (PREDICTED: cytochrome b5 isoform E-like [Erythranthe guttata] >gi|604343365|gb|EYU42285.1| hypothetical protein MIMGU_mgv1a017250mg [Erythranthe guttata])

HSP 1 Score: 64.3142 bits (155), Expect = 1.215e-9
Identity = 33/67 (49.25%), Postives = 42/67 (62.69%), Query Frame = 0
Query:  155 VYPYELTYAHCHTYTCRIIVHGKVYDVTSFLWAHPGGDAILLEYGGPVDATAVFELSKHSLVARERM 221
            VY +E    H + + C +I+ GKVYDVT+FL  HPGGD  LLE  G  DAT  FE   HS  A+++M
Sbjct:    5 VYTFEEVVKHNNNHDCWLIISGKVYDVTAFLADHPGGDETLLESTGK-DATGDFEDVGHSKDAKDKM 70          
BLAST of EWM29879.1 vs. NCBI_GenBank
Match: gi|2695711|emb|CAA04703.1| (cytochome b5, partial [Olea europaea])

HSP 1 Score: 65.855 bits (159), Expect = 1.223e-9
Identity = 34/72 (47.22%), Postives = 42/72 (58.33%), Query Frame = 0
Query:  155 VYPYELTYAHCHTYTCRIIVHGKVYDVTSFLWAHPGGDAILLEYGGPVDATAVFELSKHSLVARERMHSQYL 226
            +Y YE    H  T  C ++++GKVYDVT F+  HPGGD +LL   G  DAT  FE   HS  ARE M   Y+
Sbjct:    7 IYVYEEVEKHDKTKDCWLVINGKVYDVTPFMDDHPGGDEVLLSATGK-DATNDFEDVGHSDSAREMMDKYYI 77          
BLAST of EWM29879.1 vs. NCBI_GenBank
Match: gi|802761855|ref|XP_012089900.1| (cytochrome b5 isoform X1 [Jatropha curcas] >gi|643706706|gb|KDP22680.1| hypothetical protein JCGZ_02465 [Jatropha curcas])

HSP 1 Score: 65.4698 bits (158), Expect = 1.695e-9
Identity = 33/72 (45.83%), Postives = 42/72 (58.33%), Query Frame = 0
Query:  155 VYPYELTYAHCHTYTCRIIVHGKVYDVTSFLWAHPGGDAILLEYGGPVDATAVFELSKHSLVARERMHSQYL 226
            ++ +E    H  T  C +I+ GKVYDVTSF+  HPGGD +LL   G  DAT  FE   HS  AR+ M   Y+
Sbjct:    7 IHKFEDVAVHNKTKDCWLIISGKVYDVTSFMDDHPGGDEVLLSSTGK-DATNDFEDVGHSDSARDMMEKYYI 77          
BLAST of EWM29879.1 vs. NCBI_GenBank
Match: gi|719964326|ref|XP_010252345.1| (PREDICTED: cytochrome b5 [Nelumbo nucifera] >gi|719964329|ref|XP_010252353.1| PREDICTED: cytochrome b5 [Nelumbo nucifera])

HSP 1 Score: 65.0846 bits (157), Expect = 1.741e-9
Identity = 35/71 (49.30%), Postives = 41/71 (57.75%), Query Frame = 0
Query:  156 YPYELTYAHCHTYTCRIIVHGKVYDVTSFLWAHPGGDAILLEYGGPVDATAVFELSKHSLVARERMHSQYL 226
            Y +E    H  T  C +I+ GKVYDVTSF+  HPGGD +LL   G  DAT  FE   HS  ARE M   Y+
Sbjct:    8 YLFEEVAEHNKTKDCWLIISGKVYDVTSFMDDHPGGDEVLLAATGK-DATNDFEDVGHSDSAREIMEKYYI 77          
BLAST of EWM29879.1 vs. NCBI_GenBank
Match: gi|1072927968|ref|XP_018474734.1| (PREDICTED: cytochrome b5 [Raphanus sativus])

HSP 1 Score: 65.0846 bits (157), Expect = 1.909e-9
Identity = 36/69 (52.17%), Postives = 42/69 (60.87%), Query Frame = 0
Query:  164 HCHTYTCRIIVHGKVYDVTSFLWAHPGGDAILLEYGGPVDATAVFELSKHSLVARERMHSQYL-MWDPT 231
            H H + C II++GKVY+VT FL  HPGGD +LL   G  DAT  FE   HS  ARE M   Y+   DPT
Sbjct:   16 HNHAHDCWIIINGKVYNVTKFLEDHPGGDEVLLSSTGK-DATDDFEDVGHSESAREMMEQYYVGEIDPT 83          
The following BLAST results are available for this feature:
BLAST of EWM29879.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112461|gb|EWM29879.1|0.000e+0100.00cytochrome b5 [Nannochloropsis gaditana][more]
gi|1175865154|ref|XP_020586418.1|5.211e-1052.38cytochrome b5-like [Phalaenopsis equestris] >gi|11... [more]
gi|871223682|ref|XP_005095539.2|6.332e-1052.94PREDICTED: cytochrome b5 isoform A-like [Aplysia c... [more]
gi|168024257|ref|XP_001764653.1|6.460e-1048.10predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1072904753|ref|XP_018480427.1|1.111e-945.83PREDICTED: cytochrome b5 [Raphanus sativus][more]
gi|848861099|ref|XP_012831375.1|1.215e-949.25PREDICTED: cytochrome b5 isoform E-like [Erythrant... [more]
gi|2695711|emb|CAA04703.1|1.223e-947.22cytochome b5, partial [Olea europaea][more]
gi|802761855|ref|XP_012089900.1|1.695e-945.83cytochrome b5 isoform X1 [Jatropha curcas] >gi|643... [more]
gi|719964326|ref|XP_010252345.1|1.741e-949.30PREDICTED: cytochrome b5 [Nelumbo nucifera] >gi|71... [more]
gi|1072927968|ref|XP_018474734.1|1.909e-952.17PREDICTED: cytochrome b5 [Raphanus sativus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna793rna793Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications