EWM29882.1, cds790 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29882.1 vs. NCBI_GenBank
Match: gi|585112464|gb|EWM29882.1| (40s ribosomal protein s4 [Nannochloropsis gaditana]) HSP 1 Score: 535.798 bits (1379), Expect = 0.000e+0 Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0 Query: 1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNFPAGFMDVITIEKSGDEFRLLYDVKGRFYLQRLEEGSEERNFKLCRVNKNEMSANKIPYIVTHDGRTIRYPDPLIKMDDTVKVDIRTGKILDFIKFDLGNLVYLTRGHNTGRVGMIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGQGNKPMVSLPKGKGIKLSIVEERSARKGQ 260 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNFPAGFMDVITIEKSGDEFRLLYDVKGRFYLQRLEEGSEERNFKLCRVNKNEMSANKIPYIVTHDGRTIRYPDPLIKMDDTVKVDIRTGKILDFIKFDLGNLVYLTRGHNTGRVGMIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGQGNKPMVSLPKGKGIKLSIVEERSARKGQ Sbjct: 1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNFPAGFMDVITIEKSGDEFRLLYDVKGRFYLQRLEEGSEERNFKLCRVNKNEMSANKIPYIVTHDGRTIRYPDPLIKMDDTVKVDIRTGKILDFIKFDLGNLVYLTRGHNTGRVGMIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGQGNKPMVSLPKGKGIKLSIVEERSARKGQ 260
BLAST of EWM29882.1 vs. NCBI_GenBank
Match: gi|298707012|emb|CBJ29820.1| (40S ribosomal protein S4 [Ectocarpus siliculosus]) HSP 1 Score: 399.053 bits (1024), Expect = 1.463e-138 Identity = 181/257 (70.43%), Postives = 221/257 (85.99%), Query Frame = 0 Query: 1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNFPAGFMDVITIEKSGDEFRLLYDVKGRFYLQRLEEGSEERNFKLCRVNKNEMSANKIPYIVTHDGRTIRYPDPLIKMDDTVKVDIRTGKILDFIKFDLGNLVYLTRGHNTGRVGMIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGQGNKPMVSLPKGKGIKLSIVEERSAR 257 M RGPKKH+KR+NAP+HW+L KM+GI+AP+PS GPH RE LPL++I+RNRLKYALT +EAN ICMQKL+KVDGKVRTD+NFPAGFMDV+ I+KSGD FRLLY+ KGRF L R+ E EE FKLCRVNK EMS NKIPY+VTHDGRTIRYPDPLIK++DT+KVD+ TGK +D IKF++GN+ + RG N GRVG++QHIERHPGSFDI++VKD GH FATR QN+F +G G + MVSLPKGKG+KL+I+EE++A+ Sbjct: 1 MGRGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGKVRTDVNFPAGFMDVVQIQKSGDLFRLLYNTKGRFVLHRISE--EESKFKLCRVNKVEMSKNKIPYLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIDTIKFEIGNVCMIARGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFTMGHGTRAMVSLPKGKGVKLTILEEKAAK 255
BLAST of EWM29882.1 vs. NCBI_GenBank
Match: gi|675386781|gb|KFM79678.1| (40S ribosomal protein S4, partial [Stegodyphus mimosarum]) HSP 1 Score: 384.8 bits (987), Expect = 4.813e-133 Identity = 181/254 (71.26%), Postives = 216/254 (85.04%), Query Frame = 0 Query: 1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNFPAGFMDVITIEKSGDEFRLLYDVKGRFYLQRLEEGSEERNFKLCRVNKNEMSANKIPYIVTHDGRTIRYPDPLIKMDDTVKVDIRTGKILDFIKFDLGNLVYLTRGHNTGRVGMIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGQGNKPMVSLPKGKGIKLSIVEER 254 MARGPKKHLKR+NAP+ WML K+ G+FAPRPSTGPHKLRESLPLI++LRNRLKYALT +E I MQ+L+KVDGKVRTD N+PAGFMDVITIEK+G+ FRLLYDVKGRF L R+ +EE +KLCRV + ++ IP++VTHDGRTIRYPDPLIK+ DT+++DI TGKI+DFIKFD+GNLV +T GHN GRVG I ERHPGSFDI+ VKD+QGH+FATR VFVIG+GNKP +SLP+GKG+KLS+ EER Sbjct: 1 MARGPKKHLKRLNAPKSWMLDKLGGVFAPRPSTGPHKLRESLPLIIMLRNRLKYALTNSEVTKIVMQRLIKVDGKVRTDSNYPAGFMDVITIEKTGEFFRLLYDVKGRFILHRIT--AEEAKYKLCRVKRVQVGPKGIPFLVTHDGRTIRYPDPLIKVHDTIQLDIGTGKIMDFIKFDIGNLVMVTGGHNLGRVGTITSRERHPGSFDIVHVKDSQGHSFATRLNYVFVIGKGNKPFISLPRGKGVKLSVAEER 252
BLAST of EWM29882.1 vs. NCBI_GenBank
Match: gi|1009544563|ref|XP_015908355.1| (40S ribosomal protein S4 [Parasteatoda tepidariorum]) HSP 1 Score: 379.407 bits (973), Expect = 8.401e-131 Identity = 177/257 (68.87%), Postives = 214/257 (83.27%), Query Frame = 0 Query: 1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNFPAGFMDVITIEKSGDEFRLLYDVKGRFYLQRLEEGSEERNFKLCRVNKNEMSANKIPYIVTHDGRTIRYPDPLIKMDDTVKVDIRTGKILDFIKFDLGNLVYLTRGHNTGRVGMIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGQGNKPMVSLPKGKGIKLSIVEERSAR 257 MARGPKKHLKR+ AP+ WML K+ G+FAPRPSTGPHKLRESLPLI+++RNRLKYALT AE I MQ+L+KVDGKVRTD NFP+GFMD ITIEK+G+ FRLLYDVKGRF L R+ +EE +KLCRV + ++ IP++VTHDGRTIRYPDPLIK+ DT+++DI TGKI+DFIKFD+GNLV +T GHN GRVG I ERHPGSFDI+ VKD+ GH+FATR +FVIG+GNKP +SLP+GKG++LS+ EER R Sbjct: 1 MARGPKKHLKRLQAPKSWMLDKLGGVFAPRPSTGPHKLRESLPLIIMIRNRLKYALTNAEVTKIVMQRLIKVDGKVRTDKNFPSGFMDTITIEKTGEYFRLLYDVKGRFLLHRIT--AEEAKYKLCRVKRVQVGPKGIPFLVTHDGRTIRYPDPLIKVHDTIQLDIATGKIMDFIKFDIGNLVMVTGGHNLGRVGTITSRERHPGSFDIVHVKDSLGHSFATRLSYIFVIGKGNKPFISLPRGKGVRLSVAEERDRR 255
BLAST of EWM29882.1 vs. NCBI_GenBank
Match: gi|1048040693|ref|XP_017477232.1| (PREDICTED: 40S ribosomal protein S4 [Rhagoletis zephyria]) HSP 1 Score: 375.941 bits (964), Expect = 2.418e-129 Identity = 176/257 (68.48%), Postives = 211/257 (82.10%), Query Frame = 0 Query: 1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNFPAGFMDVITIEKSGDEFRLLYDVKGRFYLQRLEEGSEERNFKLCRVNKNEMSANKIPYIVTHDGRTIRYPDPLIKMDDTVKVDIRTGKILDFIKFDLGNLVYLTRGHNTGRVGMIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGQGNKPMVSLPKGKGIKLSIVEERSAR 257 MARGPKKHLKR+ AP+ WML K+ G+FAPRPS+GPHKLRESLPL++ LRNRLKYAL AE I MQ+L+KVDGKVRTD FPAGFMDVITIEK+G+ FRL+YDVKGRF + R+ +EE +KLC+V K ++ A +P++VTHDGRTIRYPDPLIK +DT++VDI TGKI D+IKFD GNL +T G N GRVG + + ERHPGSFDI+ VKD+QGH FATR NVF+IG+GNKP +SLPKGKG+KLSI EER R Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSSGPHKLRESLPLMIFLRNRLKYALNGAEVTKIVMQRLIKVDGKVRTDPTFPAGFMDVITIEKTGEFFRLVYDVKGRFTIHRIS--AEEAKYKLCKVRKTQLGAKGVPFVVTHDGRTIRYPDPLIKANDTIQVDIATGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEERDKR 255
BLAST of EWM29882.1 vs. NCBI_GenBank
Match: gi|498970418|ref|XP_004526806.1| (40S ribosomal protein S4 [Ceratitis capitata] >gi|751439300|ref|XP_011183473.1| PREDICTED: 40S ribosomal protein S4 [Zeugodacus cucurbitae] >gi|929347740|ref|XP_014096152.1| PREDICTED: 40S ribosomal protein S4 [Bactrocera oleae] >gi|1098636064|ref|XP_018785465.1| PREDICTED: 40S ribosomal protein S4 [Bactrocera latifrons]) HSP 1 Score: 375.17 bits (962), Expect = 3.626e-129 Identity = 176/257 (68.48%), Postives = 211/257 (82.10%), Query Frame = 0 Query: 1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNFPAGFMDVITIEKSGDEFRLLYDVKGRFYLQRLEEGSEERNFKLCRVNKNEMSANKIPYIVTHDGRTIRYPDPLIKMDDTVKVDIRTGKILDFIKFDLGNLVYLTRGHNTGRVGMIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGQGNKPMVSLPKGKGIKLSIVEERSAR 257 MARGPKKHLKR+ AP+ WML K+ G+FAPRPS+GPHKLRESLPL++ LRNRLKYAL AE I MQ+L+KVDGKVRTD +PAGFMDVITIEK+G+ FRL+YDVKGRF + R+ +EE +KLC+V K ++ A +P++VTHDGRTIRYPDPLIK +DTV+VDI TGKI D+IKFD GNL +T G N GRVG + + ERHPGSFDI+ VKD+QGH FATR NVF+IG+GNKP +SLPKGKG+KLSI EER R Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSSGPHKLRESLPLMIFLRNRLKYALNGAEVTKIVMQRLIKVDGKVRTDPTYPAGFMDVITIEKTGEFFRLVYDVKGRFTIHRIS--AEEAKYKLCKVRKTQLGAKGVPFVVTHDGRTIRYPDPLIKANDTVQVDIATGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEERDKR 255
BLAST of EWM29882.1 vs. NCBI_GenBank
Match: gi|325184655|emb|CCA19147.1| (40S ribosomal protein S4 putative [Albugo laibachii Nc14]) HSP 1 Score: 375.17 bits (962), Expect = 3.872e-129 Identity = 174/258 (67.44%), Postives = 211/258 (81.78%), Query Frame = 0 Query: 1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNFPAGFMDVITIEKSGDEFRLLYDVKGRFYLQRLEEGSEERNFKLCRVNKNEMSANKIPYIVTHDGRTIRYPDPLIKMDDTVKVDIRTGKILDFIKFDLGNLVYLTRGHNTGRVGMIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGQGNKPMVSLPKGKGIKLSIVEERSARK 258 M RGP+KHLKR++AP+HWML K+DG++APRPS+GPHKLRE LPLI+ILRNRLKYALTK E ICMQK VKVDGK+R D NFPAGFMD++ I KSGD+FRLLYD KGRF L R+ EE+ +KLC+V + E + IPY+ T+DGRTIRYPDPL+K +DTVK+D+ TGKI+DFIKF+ GNLV +TRG NTG VGM+ IERH GSF I ++D+ GH FATR NVF IG G++P +SLPKGKGIKLSI+EERS R+ Sbjct: 1 MPRGPRKHLKRLSAPKHWMLGKLDGVWAPRPSSGPHKLRECLPLIIILRNRLKYALTKQEVTMICMQKAVKVDGKIRVDPNFPAGFMDIVEIPKSGDQFRLLYDTKGRFVLHRVNH--EEKKYKLCKVIRQEYTKKGIPYVATNDGRTIRYPDPLVKSNDTVKIDLETGKIVDFIKFETGNLVMVTRGRNTGIVGMLHQIERHEGSFSIARIRDSTGHEFATRLGNVFAIGNGSRPWISLPKGKGIKLSILEERSVRE 256
BLAST of EWM29882.1 vs. NCBI_GenBank
Match: gi|751804965|ref|XP_011212693.1| (PREDICTED: 40S ribosomal protein S4 [Bactrocera dorsalis]) HSP 1 Score: 375.17 bits (962), Expect = 4.821e-129 Identity = 176/257 (68.48%), Postives = 211/257 (82.10%), Query Frame = 0 Query: 1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNFPAGFMDVITIEKSGDEFRLLYDVKGRFYLQRLEEGSEERNFKLCRVNKNEMSANKIPYIVTHDGRTIRYPDPLIKMDDTVKVDIRTGKILDFIKFDLGNLVYLTRGHNTGRVGMIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGQGNKPMVSLPKGKGIKLSIVEERSAR 257 MARGPKKHLKR+ AP+ WML K+ G+FAPRPS+GPHKLRESLPL++ LRNRLKYAL AE I MQ+L+KVDGKVRTD +PAGFMDVITIEK+G+ FRL+YDVKGRF + R+ +EE +KLC+V K ++ A +P++VTHDGRTIRYPDPLIK +DTV+VDI TGKI D+IKFD GNL +T G N GRVG + + ERHPGSFDI+ VKD+QGH FATR NVF+IG+GNKP +SLPKGKG+KLSI EER R Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSSGPHKLRESLPLMIFLRNRLKYALNGAEVTKIVMQRLIKVDGKVRTDPTYPAGFMDVITIEKTGEFFRLVYDVKGRFTIHRIS--AEEAKYKLCKVRKTQLGAKGVPFVVTHDGRTIRYPDPLIKANDTVQVDIATGKITDYIKFDSGNLCMITGGRNLGRVGSVVNRERHPGSFDIVHVKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEERDKR 255
BLAST of EWM29882.1 vs. NCBI_GenBank
Match: gi|1036057592|ref|XP_016931858.1| (PREDICTED: 40S ribosomal protein S4 [Drosophila suzukii] >gi|1036818999|ref|XP_016997889.1| PREDICTED: 40S ribosomal protein S4 [Drosophila takahashii] >gi|1036846913|ref|XP_016956004.1| PREDICTED: 40S ribosomal protein S4 [Drosophila biarmipes] >gi|1037052803|ref|XP_017081111.1| PREDICTED: 40S ribosomal protein S4 [Drosophila eugracilis]) HSP 1 Score: 374.785 bits (961), Expect = 6.622e-129 Identity = 176/257 (68.48%), Postives = 211/257 (82.10%), Query Frame = 0 Query: 1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNFPAGFMDVITIEKSGDEFRLLYDVKGRFYLQRLEEGSEERNFKLCRVNKNEMSANKIPYIVTHDGRTIRYPDPLIKMDDTVKVDIRTGKILDFIKFDLGNLVYLTRGHNTGRVGMIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGQGNKPMVSLPKGKGIKLSIVEERSAR 257 MARGPKKHLKR+ AP+ WML K+ G+FAPRPSTGPHKLRESLPL++ LRNRLKYAL AE I MQ+LVKVDGKVRTD +PAGFMDVIT+EK+G+ FRL+YDVKGRF + R+ +EE +KLC+V KN++ A +P++VTHDGRTIRYPDPLI +DTV+VDI TGKI D+IKFD GNL +T G N GRVG + + ERHPGSFDI+ +KD+QGH FATR NVF+IG+GNKP +SLPKGKG+KLSI EER R Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGFMDVITLEKTGEFFRLVYDVKGRFTIHRIS--AEEAKYKLCKVKKNQLGAKGVPFLVTHDGRTIRYPDPLIHANDTVQVDIATGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSISEERDKR 255
BLAST of EWM29882.1 vs. NCBI_GenBank
Match: gi|557780154|ref|XP_005189699.1| (PREDICTED: 40S ribosomal protein S4 [Musca domestica]) HSP 1 Score: 374.4 bits (960), Expect = 7.055e-129 Identity = 174/257 (67.70%), Postives = 210/257 (81.71%), Query Frame = 0 Query: 1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNFPAGFMDVITIEKSGDEFRLLYDVKGRFYLQRLEEGSEERNFKLCRVNKNEMSANKIPYIVTHDGRTIRYPDPLIKMDDTVKVDIRTGKILDFIKFDLGNLVYLTRGHNTGRVGMIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGQGNKPMVSLPKGKGIKLSIVEERSAR 257 MARGPKKHLKR+ AP+ WML K+ G+FAPRPSTGPHKLRESLPL++ LRNRLKYAL AE I MQ+L+KVDGKVRTD +PAGFMDVI+IEK+G+ FRL+YD+KGRF + R+ +EE +KLC+V K ++ A +P++VTHDGRTIRYPDPLIK +DTV+VDI TGKI D+IKFD GNL +T G N GRVG + + ERHPGSFDI+ +KD QGH FATR NVF+IG+GNKP +SLPKGKG+KLSI EER R Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLMIFLRNRLKYALNGAEVTKIVMQRLIKVDGKVRTDPTYPAGFMDVISIEKTGENFRLIYDIKGRFTIHRIS--NEEAAYKLCKVRKTQLGAKGVPFVVTHDGRTIRYPDPLIKANDTVQVDIATGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDTQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEERDKR 255 The following BLAST results are available for this feature:
BLAST of EWM29882.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|