rna790, rna790 (mRNA) Nannochloropsis gaditana

Overview
Namerna790
Unique Namerna790
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1128
Alignment locationCM002456.1:426597..428463 +

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Properties
Property NameValue
Product40s ribosomal protein s4
Orig transcript idgnl|cribi|Naga_100106g2.1456.mrna
Orig protein idgnl|cribi|Naga_100106g2.1456
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:426597..428463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100106g2gene756Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna790rna790-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29882.1cds790Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna790 ID=rna790|Name=rna790|organism=Nannochloropsis gaditana|type=mRNA|length=1128bp
GAAGAGGAGGAAGAGGAGGAAGAGGAAGCCAGTAGCAGCAGCGAGGAGTC
AACAAGTGGGCATGAAAGGAGAGGGAGAAAGGACAAATCGGTGCCCAAGA
GATTGCGGATGACGCCCGCCGAGAGCTTCTTCAAGGATCTGTGAGGGCGT
GGCGAACCGGGGCTTCTGTGTCGGTGCGGGACTCGTGGCCTCTAAAGGGA
AGGGCAGGTGGGGAGAGGGAAGTTCTGAGACGCCACCCCAATCAGCGGGC
AGTAGGGTCGTGAGGAACATTTATCCCCTCCTTGATCCCTGGGGGGACGC
TTGCACTCTTGGAAGCAGAACGACATAGAGCATTGTACAGCGGAGAGACG
CAGGCATGGGCTTGGTTGTAACGGCGCGTCAGGATCGAGCATTCTCGCAC
TTTTTATGCCCGCTTCTTTCTTTGGCCCTAGCCGTCCATATCGTTGATCA
AAGATCCTCTTTCCCCTTCAACCTGCCCCCGTCGCTGCGCAAAGTCCCTC
TCAACTCCCTCCGCCCTTCCTCCCTCCCGAATTCCCTCCCTCCCTCCCTC
CCTCTTGTCCCCCTGCAGGAGCGGACAATGCCCGTCTTTCCTCAGTTTCT
CGCACCACAAGTGCACCATCTCATTCACTTCGTCAAACTCGAGTCCGGTG
CTGCTCAAGCGCAGGGAACGGAGAAGTGGGGCACCTCCAAGTTGCAGACC
TCTGACGATTTCCTGCATGCCTGAAAGAAGGGCAGGAAAGGGAGGAGATA
GTACACGATACTCTAAAACGTAAAACATAGAGTGCGATGCTATTAAAAAG
CAAGGAAAAGAAGAGACTTGAGCCAGAATAGAATCGACGGCACTGGATCG
AAACGTACCCTCGTAGGTGAGAAGATTCTCGGATAAGTCCAGGCACCGCA
GCCGTCGGAAATATCGAGCCTCGAGTACAACCGCCACGCCTGTGAAGGCC
TCCGTCTCTAAACATGCCTCCCGCAAATCCAGATCCTGCAGCCAGGGGCA
GCTTCCTTGCTTGAGAGCCTGGAAGAAGGGCTTCGTGTCCTTGTCCGTCA
GGGGGCACCCCCCCAGGGAGAGGCGTTTGAGCTTCCGACACGCCCCGTGC
CTCCAAGCGTTGACCAAGCCCAGACACA
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protein sequence of rna790

>rna790-protein ID=rna790-protein|Name=rna790|organism=Nannochloropsis gaditana|type=polypeptide|length=260bp
MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRN
RLKYALTKAEANAICMQKLVKVDGKVRTDLNFPAGFMDVITIEKSGDEFR
LLYDVKGRFYLQRLEEGSEERNFKLCRVNKNEMSANKIPYIVTHDGRTIR
YPDPLIKMDDTVKVDIRTGKILDFIKFDLGNLVYLTRGHNTGRVGMIQHI
ERHPGSFDIITVKDAQGHTFATRRQNVFVIGQGNKPMVSLPKGKGIKLSI
VEERSARKGQ
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mRNA from alignment at CM002456.1:426597..428463+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna790 ID=rna790|Name=rna790|organism=Nannochloropsis gaditana|type=mRNA|length=1867bp|location=Sequence derived from alignment at CM002456.1:426597..428463+ (Nannochloropsis gaditana)
CTCTGGCTTTGACTTCTTTGGGCCCTGTATTCGCACTTGCCACTGCAAGT
TCTGGTTTTGGCACGAAAAATACCGTGTGTGTGAGGATGAGGGTTGCGAT
TGATTTCTTTCGCGTTGGACGGAGGCGCTCTCATCACAacgtctccctcc
agccaCACACGCCCTCTTCGCTGTCTTtcacctccatcccaccctcttAA
TTAACGCGTTCCTAAACCATTCCTTCGCATACCACATTCTTGACACACGT
AAAATTTCACAGTGCGCGATACTTCTGAATTGGTTGCTCCGCCGTAATCA
ATCATGGTAAGTGTTTGCAAGAGGTCGTgcggaggatgaagaggtgCCTG
AGAACGATAGATGGAAAGGGTCGGGTGGCCTTGGTGATGGCATTGTTTTC
AGAGCTTTCCGAACATAGTCTTGTATCTGCAGTATTAATTGATGTATGCA
GTGTGTATGATCCCACCCAGTGCCTTTATGCAGCATGGGATTGTTAAATA
GATATGAAAGCATAACCGgtagaaaagaaagagagatgAGACGCTTGGTA
GAACGCCATAATCTATGCGTTATATGAGGAGATACAAGCATAGGCTGTCA
CTCAATATGTaaatgggagaagaagcgtaTGTTACTTGTAGATCAGGGAG
ACGTGTGGATAAAGCGCGCAGCGAtttgtcttcccctctccgtctcgATA
CCTTTCTGCTCGGTAACAAACTGACATGGACTCTATCTTATATAAATCAC
AACGTTTGTAGGCGCGCGGTCCAAAGAAGCATCTCAAGCGGGTCAATGCC
CCCCGGCACTGGATGCTGTCCAAAATGGACGGCATCTTCGCCCCTCGTCC
GTCCACCGGCCCGCACAAACTTCGAGAATCTCTTCCCCTCATTCTCATCC
TTCGTAACCGGCTCAAGTACGCCTTGACCAAGGCCGAAGCCAATGCAATT
TGCATGCAAAAACTAGTCAAAGTTGACGGGAAGGTGCGAACTGACCTGAA
CTTCCCTGCCGGCTTCATGGATGTGATCACCATCGAGAAGTCTGGGGATG
AGTTCCGTCTGCTCTACGATGTGAAAGGGCGCTTCTACCTGCaacgcttg
gaggagggctcAGAGGAGCGAAATTTCAAGCTGTGCCGCGTGAACAAGAA
CGAAATGTCGGCCAATAAGATTCCCTACATTGTCACACACGATGGGCGCA
CCATCCGGTACCCCGACCCTTTGATCAAGATGGACGACACGGTTAAGGTC
GACATCCGCACCGGAAAGATCCTGGATTTCATCAAGTTCGATCTGGGCAA
TTTGGTATATCTGACCCGCGGGCATAACACGGGGAGGGTAGGGATGATCC
AGCACATCGAGCGCCACCCGGGGTCCTTTGACATCATTACGGTCAAGGAT
GCGCAGGGCCACACGTTTGCCACGCGCCGACAAAATGTGTTTGTTATCGG
ACAGGGCAACAAGCCCATGGTCTCGTTAccgaaggggaaaggcatcAAAC
TTTCGATCGTGGAGGAGCGgagcgcgaggaaggggcagtaagatggggga
aggagggtagggggacgccgggacgggggggacgagTCTAGGAGCCGGGG
TCAGTATTTGTTATGCTCTCGGCAGTAATGGCTCAGGTGCCTAGACTCAT
TGTTCTTGTGGTGTGAGAATAACGGGGGATCGTAGTCACAGGACGCTTGG
TCAGTTGGCACGGTGCTTGCCTACCTCTCTCACGgacggacatggaggag
gttgaaaggAACTCATTGACACCAAAAAGAAATAGGGGACGAGTTGACGT
CATCGATCGCGACCCTGTCGAGCGCCATGTGAAAGTTCTCATTCATTTGA
CCCAGGCCGCGTGAGCC
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Coding sequence (CDS) from alignment at CM002456.1:426597..428463+

>rna790 ID=rna790|Name=rna790|organism=Nannochloropsis gaditana|type=CDS|length=1566bp|location=Sequence derived from alignment at CM002456.1:426597..428463+ (Nannochloropsis gaditana)
ATGGCGCGCGGTCCAAAGAAGCATCTCAAGCGGGTCAATGCCCCCCGGCA
CTGGATGCTGTCCAAAATGGACGGCATCTTCGCCCCTCGTCCGTCCACCG
GCCCGCACAAACTTCGAGAATCTCTTCCCCTCATTCTCATCCTTCGTAAC
CGGCTCAAGTACGCCTTGACCAAGGCCGAAGCCAATGCAATTTGCATGCA
AAAACTAGTCAAAGTTGACGGGAAGGTGCGAACTGACCTGAACTTCCCTG
CCGGCTTCATGGATGTGATCACCATCGAGAAGTCTGGGGATGAGTTCCGT
CTGCTCTACGATGTGAAAGGGCGCTTCTACCTGCaacgcttggaggaggg
ctcAGAGGAGCGAAATTTCAAGCTGTGCCGCGTGAACAAGAACGAAATGT
CGGCCAATAAGATTCCCTACATTGTCACACACGATGGGCGCACCATCCGG
TACCCCGACCCTTTGATCAAGATGGACGACACGGTTAAGGTCGACATCCG
CACCGGAAAGATCCTGGATTTCATCAAGTTCGATCTGGGCAATTTGGTAT
ATCTGACCCGCGGGCATAACACGGGGAGGGTAGGGATGATCCAGCACATC
GAGCGCCACCCGGGGTCCTTTGACATCATTACGGTCAAGGATGCGCAGGG
CCACACGTTTGCCACGCGCCGACAAAATGTGTTTGTTATCGGACAGGGCA
ACAAGCCCATGGTCTCGTTAccgaaggggaaaggcatcAAACTTTCGATC
GTGGAGGAGCGgagcgcgaggaaggggcagtaaATGGCGCGCGGTCCAAA
GAAGCATCTCAAGCGGGTCAATGCCCCCCGGCACTGGATGCTGTCCAAAA
TGGACGGCATCTTCGCCCCTCGTCCGTCCACCGGCCCGCACAAACTTCGA
GAATCTCTTCCCCTCATTCTCATCCTTCGTAACCGGCTCAAGTACGCCTT
GACCAAGGCCGAAGCCAATGCAATTTGCATGCAAAAACTAGTCAAAGTTG
ACGGGAAGGTGCGAACTGACCTGAACTTCCCTGCCGGCTTCATGGATGTG
ATCACCATCGAGAAGTCTGGGGATGAGTTCCGTCTGCTCTACGATGTGAA
AGGGCGCTTCTACCTGCaacgcttggaggagggctcAGAGGAGCGAAATT
TCAAGCTGTGCCGCGTGAACAAGAACGAAATGTCGGCCAATAAGATTCCC
TACATTGTCACACACGATGGGCGCACCATCCGGTACCCCGACCCTTTGAT
CAAGATGGACGACACGGTTAAGGTCGACATCCGCACCGGAAAGATCCTGG
ATTTCATCAAGTTCGATCTGGGCAATTTGGTATATCTGACCCGCGGGCAT
AACACGGGGAGGGTAGGGATGATCCAGCACATCGAGCGCCACCCGGGGTC
CTTTGACATCATTACGGTCAAGGATGCGCAGGGCCACACGTTTGCCACGC
GCCGACAAAATGTGTTTGTTATCGGACAGGGCAACAAGCCCATGGTCTCG
TTAccgaaggggaaaggcatcAAACTTTCGATCGTGGAGGAGCGgagcgc
gaggaaggggcagtaa
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Synonyms
Publications