|
|
Properties
| Property Name | Value |
|---|
| Product | dna primase large subunit |
| Orig transcript id | gnl|cribi|Naga_100035g42.3349.mrna |
| Orig protein id | gnl|cribi|Naga_100035g42.3349 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:399984..401733 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna781 ID=rna781|Name=rna781|organism=Nannochloropsis gaditana|type=mRNA|length=3664bp
CGCACAGTTACAGACCAGACCTAATGGTAAACAAGACAAGCTAGCTTTTA
CTCCTTTTCCCCCGCGGCCACATCGCCCATATCGCTTTAGGCGGGCCCAT
TCAGCATCATGGGTTTTCCCTTTGGCCGCCCCGACACGTCCCTCCCTATG
TTGAGCGCTTTAACCCTGCTCGGCATCATTCAATGCTTTGCGCTTGCTGT
CTTCGTCTTTGGCTTTTTCCTCACGCGCCAAGAAGTGCCACATTACAGTC
ACTGTCACGACAGCTCTCTCTGGCCCGTGGCTTCTCCACTTCACCATTCC
TCCCCTCCTTCACCCTCCAAGTCCCCTTGCTGGTCCTCCCCAATTCATCC
TCTTTTCGACAGGGCTGTAATTGTGGTTATTGACGCCCTTCGCTTCGACT
TCATCAATCCCTACGATGAGGAAGCCCTCGCCACCCGGATTCGACAAGAA
GGGACACGGGACGCCAAATATCACTTGAACAAGATGCCCGTAGTTCGAGA
GCTCATGGCGACAGATCCAACGCGAGCCTTACTCTATCGTTTCGAAGCCG
ATCCGCCTACCACTACCGTGCAAAGGTTGAAAGGATTGACGACGGGGGCC
TTGCCAACTTTCTTGGATTTTCGACAAAATTTCCATTCGCCTGCCATTGC
CGAAGACAATTTGGTCCATCAGCTAAAGCAGGCAGGAAAGCGCATCACAT
TCATGGGAGATGATACCTGGGAGCTTCTTTTCCCCGGGGCCTTCGACCGC
TCCTTCCCGTATCCGTCCTTCAACACCCGGGATCTGGACACAGTGGACAA
CGGGGTTCTCGCCCACCTCCAGCCTGAGTTGCAACGGTCCTTCCGCCCCC
CTTCCAACCAAACGGCGTCTGAAACAGCGCCAAATCTGGGAATGGCCGGC
GGTGGGAAATCCCAGGAGGATCAGGAGCCATGGGACGTGCTGATCGCTCA
CTTTTTAGGGGCCGACCATGTGGGTCATACCCACGGTCCCTCCCACCCAG
CCATGGCCAGCAAGCTCACACAGCTAGACCGGGCGCTCCGCGGCCTGGTC
GAGACCCTGGAGGGGGAGAGGAGGGCGCGCGCGGGGCGGGGGGAGCAGGT
GCTGGAGACTTTGATCGTGGTCATGGGCGACCATGGAATGACCGACGACG
GTAACCATGGCGGGGCCAGCCAGGAAGAGACTGAGGCTGCGCTTTTCTTG
TACAGTCCGGGGAAGGAGCTCGTGGCGGGGACAGAGGATGAAGGGAGGGA
GGGAGGGAGGGAGGGAGGAGGGGAAGCAGGGAAGAAGGGGAGAGGGGTCT
ATGTATGGCGGGACAGCACGGGGAAGGAGGAAGAAAGAGGGGGCTTGGTC
GCAACGCGGTTGAATGGGGGGTCCGTTCCTCGTCGCGTCGCCCAGGTGGA
TCTTGTCCCCACCCTGGCCTTGCTCCTGGGAGTGCCAGTGCCGTACCCTA
ACCTCGGGAGCGTCATGCCCGAGTTGTTCTTCGCCGCAGCCAGACAGGGT
GGGAAAGTGCGGCCAGGGTCGGGTGCAAGTCTACGCGAAGAGGGGTGGGA
GGAGCACTGGGAGGGATTGACGCACGCTTTCCAAGCGAACGCCTTCCAGA
TGGACCGGTATTTGCGCAAGTACGGCGAAGTGGCCAGTCTCCCCGAGGCG
GAAATGGCCTTCTTGGAGGCATGCCACGCCCGGGCGGTCCGGTCCCACCG
GGAGGCCGTGGAGGGGGAAGCGAGCGGGAGAGAGGAAGGACTCCGGGACG
CCTGTATCCACTATCGAAGGTTTCTGACCGAGGCTTTGGCCTTGGGCCGG
CGGATCTGGACCCAATACGACGTCGGGCTGATGCTTTGGGGTATCTTGCT
CCTAGCCCTCTCGCTCGTCGGGGGGGCGATGGTGGTGGCACCTTGTTTCC
TCCCCCCCGCGATGCCGTTGTCGCGGTCGAAGAGTGTGAAGGACAGCCAC
CCGGGCATGCAGAGCAGAGGCAGTCTTGACTTAGCGGCGCCTGCGGCGCA
CGGTCATGATATTGGCGACAGCGATCTCCCTCCAAACCCTTACTGCCTGC
AACAATGGCGGTTGCCAGACAACCTTTTTCTTCGCTATATCCTTGGGGTC
CTGGCGGTGACATTGCTGGTAAGCTGGTCCTTCCCTGTGTATTTTTTCCA
ACGGGGCAACGACCACGCAGCGACCGTGATCCCTTGCCTGCTCGTCAGCC
TCCTCCTCGGGGGTATCATCTGCCTTGCCGTGCGGGAGGATTGGAAGGCG
GCTAGTAAAGTCCAAGAGAAGAGAGGGTGGTCTTGGCGTCCGTCTGTGCC
TGTGGGAATCAGCTTAGGGCTTGTGAGCTTGCACGGCATCTCTTTGTTCT
CCAACTCCTTCATCGAAAGGGAGGAGAGTGTGCATCTCTTTCTCGGGGGG
AGCACGGCGGCCCTTCTATGGGTCCTACGGACGACAAAGCAAGCTGCGTA
TGCCGGGGTGGACAATTCGCAGGCAGGCAGCGGAGGGCCAGACAAGACTA
GCTGTAAACACTCCAGCCTATATCCTGACAGCCATAGAGCCGGTTTCCTT
TATCCTGCCTGGCTCATCCCGACACTCCTTGTCCGCGTGGCCTTCGAAGC
AAAAGGACATGGCCAAGATGTGGTGGCACACTTCCATATATGGCCCACCC
TCGCTGCTCTTCTAGCCTTACTTGTTGGGTATCACTGCCTTTCCATGTCC
TGGGGCACCCCCTCCCCCTCTCCCTCCTCCTTTGTTTCCTCCTTTCCCAC
AAAGCGCTCCGGCTACTTGGCTGTGTCTTACCTCCTCGTCCTCCTCTATT
GGATCGTACAAGTGGACGCGCAAGACCTTCCCCTTTGGCTGGCGGACCTC
ACGCATCTGGGACTCCCCCGCCTCCTGTACTCCGCCTCGCTCATCGCTTT
CCTCACAGTCTGTCGAACGACTTACATCACCCTTGGTCCCAGCGGTTCCA
ATGCTGGTAGTCAGAGCAGCAGCGCAAACTTTTGCTTGGACTTGGCCGCC
CTATCTCTTTCCCCTCCTCTGCTTCTTGTTCTTGGCCCCATGGCTCCTTT
GAGTCTCCTTTGCCTGGGAGGGATGCTTTGGACCTTACGCAAGTATTGCT
GTCCGGCCTTCGCCCTCGCATATCCCTCGTTCCCGTACCTGGTAGCTGTC
AGTTTCTTGGGCCGGGCTTTCTTCTTCGCCACAGGCCATCACAGTCAGTT
CAATCGCTTGCAGTACAGCTCAGCGTTCGTGGGCTTCGACGAATTCTCTT
TCGTGATTGGAGGTTGCCTACTCTTTCTCAACACGTTTGGCACGGAGCTT
CTCGTTCTTCTCCTTCTTGGCCATGACGTCCTCTCCTGCGCATCATCATC
CTACTCCGCGTCCCTCTTACCCTCCCTGGGCACCAGGCTTCTTATTAGTG
ATTTCAGATGTCTCTTGACCACGCTTTGTGTCCTTTTACAGCGGCGCCAC
CTGATGGTGTGGGCAATTTTCGCACCAAAATTTATTTTCGATGCATGCTT
GCACGTCGTGCTGTCTATGGGGTGTCTGGGATTGCTGTGGGGGTTAAGCT
TGAAGGAAAACGCGTGGCGCAAGAGAGGTACCGCCGGCCCAAAAATAGCA
TAATAGTGCACGATTCATGTGGAGCAAAATGCAATGAATGAAACAACAAA
AGAGATTCTGGACA back to topprotein sequence of rna781 >rna781-protein ID=rna781-protein|Name=rna781|organism=Nannochloropsis gaditana|type=polypeptide|length=514bp
MQTTTRAIHGEPTYTRVKREPTRLLSLYNTAPQAEITLEEFELYALDRLQ
ILRSIESLRLRGMKGDEFRMKLEEIISACMPMTLGTAEEVRKDQISHFIL
RIAYCKTEDLRRWFLKHESELFRFRLERLDSNERAKFMEQSGLAYDVVSK
EDVLRLKAQLQAVPIFSQQPGYGQGIHTVEVTRTQFFRIPFTQALDLVAH
RQVFLEGGFAYVPVERLVSIIVARFRSSLSRGLLEAFGAMPYVLTDGRIA
PLVSNMAKQYTGKDFSGTKTGDSLDLNDLDMLADRSMPMCMRVLHKNLRL
EHKLKHWGRLQYGLFLKGAGIGMEDAIQFWEKEFTKIMTTDVFNKQYAYS
IRHYFGKEGKRKDYTPFNCSKIILGPGPGHGEFHGCPFRHYDEANLNKLL
ERAGVGAMDRDEMIKLSKGQHYQLACMKHFETTHKGAESLISMDGVGNHP
NAFFAASMAFYKEKNGEGGRRGGSPNPSSQTSASSAGPGEDAGDPASPHG
ESMEIGTGEGSPPA back to topmRNA from alignment at CM002456.1:399984..401733- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna781 ID=rna781|Name=rna781|organism=Nannochloropsis gaditana|type=mRNA|length=1750bp|location=Sequence derived from alignment at CM002456.1:399984..401733- (Nannochloropsis gaditana)
GACAGAGGCGAAAGATTTCGCTGCTGGAGGTATGCAAACGACAACACGCG
CCATTCATGGCGAACCTACCTACACTCGAGTCAAGAGGGAGCCAACAAGG
CTTCTTAGCCTCTACAACACAGCACCGCAAGCCGAAATAACACTGGAAGA
ATTTGAGCTGTACGCCTTGGACCGTCTACAAATTTTGCGATCTATTGAAA
GCTTACGCCTGCGTGGGATGAAAGGAGACGAATTTCGAATGAAATTGGAG
GAGATAATCTCCGCCTGTATGCCTATGACGCTCGGTACGGCTGAGGAGGT
TCGGAAGGACCAGATATCTCATTTCATTCTTCGCATTGCCTACTGCAAGA
CGGAAGATTTGCGCCGATGGTTTTTGAAGCATGAGAGTGAACTTTTTCGA
TTCCGACTGGAACGTTTGGACAGTAACGAACGAGCCAAGTTCATGGAGCA
GAGTGGACTGGCCTACGATGTGGTGTCAAAAGAAGATGTTCTCCGCTTGA
AGGCTCAGCTGCAGGCGGTGCCTATTTTCAGCCAACAGCCCGGCTACGGG
CAAGGGATTCACACAGTGGAAGTGACGCGGACGCAGTTTTTCCGCATTCC
GTTCACGCAGGCCTTGGACCTGGTCGCCCACCGACAAGTCTTCCTGGAAG
GGGGCTTTGCCTATGTGCCGGTGGAACGCTTGGTGAGCATCATCGTTGCC
CGCTTCCGCAGTTCTCTTTCCCGAGGTCTTTTGGAGGCCTTTGGAGCTAT
GCCCTACGTGCTGACAGACGGGCGCATCGCCCCTTTGGTCTCCAATATGG
CCAAGCAGTACACGGGGAAAGACTTCTCGGGCACCAAAACCGGCGACTCT
TTGGATCTGAACGACCTGGACATGCTCGCGGACCGATCCATGCCCATGTG
TATGCGCGTCTTGCACAAGAACCTCAGACTAGAGCACAAACTGAAGCACT
GGGGTCGGCTGCAGTATGGACTGTTCCTGAAAGGCGCGGGCATCGGAATG
GAGGACGCCATCCAGTTTTGGGAGAAAGAGTTCACGAAGATCATGACCAC
GGATGTTTTCAACAAGCAGTACGCCTACAGCATCCGGCATTACTTTGGAA
AGGAGGGGAAAAGAAAGGACTACACGCCATTCAATTGCAGCAAGATCATC
TTGGGCCCTGGCCCCGGTCACGGGGAATTCCACGGGTGCCCCTTCCGGCA
TTACGACGAAGCAAATTTGAATAAGCTTCTAGAACGAGCAGGTGTCGGCG
CGATGGACAGGGATGAGATGATCAAACTGTCGAAAGGCCAGCACTATCAA
CTTGCCTGCATGAAGCACTTCGAGACAACGCACAAGGGAGCAGAAAGTCT
GATAAGTATGGATGGGGTGGGAAACCACCCGAACGCCTTCTTTGCCGCAA
GCATGGCCTTTTACAAGGAGAAGAATGGCGAAGGGGGAAGAAGAGGAGGT
AGTCCGAACCCATCGTCGCAGACGTCTGCCTCGTCAGCAGGGCCAGGGGA
AGACGCGGGAGACCCGGCATCCCCTCACGGCGAATCCATGGAGATAGGGA
CGGGCGAAGGGAGCCCACCGGCGTGAAGACAGCCCGTGCGTTTGATCGAG
GGAAACTGATGAAAATGTGAGCGGAGTGAGGCTACGGCTATTCTCGGTCG
ATGACGAGCGTTCAGGCAGTCAAGGAGACGTTGAAAAATAAGACAACTAG
CTGTCCAGACACCCGACCAAAAACACGACACAGTACAGAGTGCACTGCTC
back to topCoding sequence (CDS) from alignment at CM002456.1:399984..401733- >rna781 ID=rna781|Name=rna781|organism=Nannochloropsis gaditana|type=CDS|length=1545bp|location=Sequence derived from alignment at CM002456.1:399984..401733- (Nannochloropsis gaditana)
ATGCAAACGACAACACGCGCCATTCATGGCGAACCTACCTACACTCGAGT
CAAGAGGGAGCCAACAAGGCTTCTTAGCCTCTACAACACAGCACCGCAAG
CCGAAATAACACTGGAAGAATTTGAGCTGTACGCCTTGGACCGTCTACAA
ATTTTGCGATCTATTGAAAGCTTACGCCTGCGTGGGATGAAAGGAGACGA
ATTTCGAATGAAATTGGAGGAGATAATCTCCGCCTGTATGCCTATGACGC
TCGGTACGGCTGAGGAGGTTCGGAAGGACCAGATATCTCATTTCATTCTT
CGCATTGCCTACTGCAAGACGGAAGATTTGCGCCGATGGTTTTTGAAGCA
TGAGAGTGAACTTTTTCGATTCCGACTGGAACGTTTGGACAGTAACGAAC
GAGCCAAGTTCATGGAGCAGAGTGGACTGGCCTACGATGTGGTGTCAAAA
GAAGATGTTCTCCGCTTGAAGGCTCAGCTGCAGGCGGTGCCTATTTTCAG
CCAACAGCCCGGCTACGGGCAAGGGATTCACACAGTGGAAGTGACGCGGA
CGCAGTTTTTCCGCATTCCGTTCACGCAGGCCTTGGACCTGGTCGCCCAC
CGACAAGTCTTCCTGGAAGGGGGCTTTGCCTATGTGCCGGTGGAACGCTT
GGTGAGCATCATCGTTGCCCGCTTCCGCAGTTCTCTTTCCCGAGGTCTTT
TGGAGGCCTTTGGAGCTATGCCCTACGTGCTGACAGACGGGCGCATCGCC
CCTTTGGTCTCCAATATGGCCAAGCAGTACACGGGGAAAGACTTCTCGGG
CACCAAAACCGGCGACTCTTTGGATCTGAACGACCTGGACATGCTCGCGG
ACCGATCCATGCCCATGTGTATGCGCGTCTTGCACAAGAACCTCAGACTA
GAGCACAAACTGAAGCACTGGGGTCGGCTGCAGTATGGACTGTTCCTGAA
AGGCGCGGGCATCGGAATGGAGGACGCCATCCAGTTTTGGGAGAAAGAGT
TCACGAAGATCATGACCACGGATGTTTTCAACAAGCAGTACGCCTACAGC
ATCCGGCATTACTTTGGAAAGGAGGGGAAAAGAAAGGACTACACGCCATT
CAATTGCAGCAAGATCATCTTGGGCCCTGGCCCCGGTCACGGGGAATTCC
ACGGGTGCCCCTTCCGGCATTACGACGAAGCAAATTTGAATAAGCTTCTA
GAACGAGCAGGTGTCGGCGCGATGGACAGGGATGAGATGATCAAACTGTC
GAAAGGCCAGCACTATCAACTTGCCTGCATGAAGCACTTCGAGACAACGC
ACAAGGGAGCAGAAAGTCTGATAAGTATGGATGGGGTGGGAAACCACCCG
AACGCCTTCTTTGCCGCAAGCATGGCCTTTTACAAGGAGAAGAATGGCGA
AGGGGGAAGAAGAGGAGGTAGTCCGAACCCATCGTCGCAGACGTCTGCCT
CGTCAGCAGGGCCAGGGGAAGACGCGGGAGACCCGGCATCCCCTCACGGC
GAATCCATGGAGATAGGGACGGGCGAAGGGAGCCCACCGGCGTGA back to top
|