EWM29924.1, cds768 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM29924.1
Unique Name	cds768
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002456.1:375916..375982 +
Alignment location	CM002456.1:376192..377390 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM29924.1
Product	Aminoacyl-tRNA synthetase, class Ic
Orig transcript id	gnl\|cribi\|Naga_100035g30.3388.mrna
Gbkey	CDS
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:375916..375982 +
CM002456.1	supercontig	CM002456.1:376192..377390 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation
GO:0006139	nucleobase-containing compound metabolic process
GO:0006418	tRNA aminoacylation for protein translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity
GO:0004831	tyrosine-tRNA ligase activity
GO:0004812	aminoacyl-tRNA ligase activity
GO:0005524	ATP binding
GO:0000166	nucleotide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR014729	Rossmann-like_a/b/a_fold
IPR023617	Tyr-tRNA-ligase_arc/euk-type
IPR002305	aa-tRNA-synth_Ic

Homology

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BLAST of EWM29924.1 vs. NCBI_GenBank
Match: gi|585112507|gb|EWM29924.1| (Aminoacyl-tRNA synthetase, class Ic [Nannochloropsis gaditana])

HSP 1 Score: 884.404 bits (2284), Expect = 0.000e+0
Identity = 421/421 (100.00%), Postives = 421/421 (100.00%), Query Frame = 0

Query:    1 MSVDKRFSVQATARFSVLEAPGGTQRSSTSSSQGAHNNTKSTSSTVSHGPLSAGGTITRGANGLIEGKEYFVSPLSADAKYALARSVGEECIQEQELRLLLEKKPHPIVYDGFEPSGRMHIAQGVMRAINANKLTQCGCVFKFWVADWFALLNNKMGGDLKKIQTVGRYMIEIWRAVGMDMQNVEFLWASEEINAHSDEYWSRVMDIARINNLARIQRCCTIMGRKDTEEMSAAQIMYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCDSVKIKFKPVIISHHMLMGLKEGQEKMSKSDPDSAIFMEDSEADLKRKIKKAFCPPEVIEGNPIIDYVKHIIFGYYGKIEIEFQGNVRKEYVDYEEFEADYKGGKIHPGDLKPAVTMALNSILEPVRKHFESDPVAKKLLDQVKKYKTTR 421
            MSVDKRFSVQATARFSVLEAPGGTQRSSTSSSQGAHNNTKSTSSTVSHGPLSAGGTITRGANGLIEGKEYFVSPLSADAKYALARSVGEECIQEQELRLLLEKKPHPIVYDGFEPSGRMHIAQGVMRAINANKLTQCGCVFKFWVADWFALLNNKMGGDLKKIQTVGRYMIEIWRAVGMDMQNVEFLWASEEINAHSDEYWSRVMDIARINNLARIQRCCTIMGRKDTEEMSAAQIMYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCDSVKIKFKPVIISHHMLMGLKEGQEKMSKSDPDSAIFMEDSEADLKRKIKKAFCPPEVIEGNPIIDYVKHIIFGYYGKIEIEFQGNVRKEYVDYEEFEADYKGGKIHPGDLKPAVTMALNSILEPVRKHFESDPVAKKLLDQVKKYKTTR
Sbjct:    1 MSVDKRFSVQATARFSVLEAPGGTQRSSTSSSQGAHNNTKSTSSTVSHGPLSAGGTITRGANGLIEGKEYFVSPLSADAKYALARSVGEECIQEQELRLLLEKKPHPIVYDGFEPSGRMHIAQGVMRAINANKLTQCGCVFKFWVADWFALLNNKMGGDLKKIQTVGRYMIEIWRAVGMDMQNVEFLWASEEINAHSDEYWSRVMDIARINNLARIQRCCTIMGRKDTEEMSAAQIMYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCDSVKIKFKPVIISHHMLMGLKEGQEKMSKSDPDSAIFMEDSEADLKRKIKKAFCPPEVIEGNPIIDYVKHIIFGYYGKIEIEFQGNVRKEYVDYEEFEADYKGGKIHPGDLKPAVTMALNSILEPVRKHFESDPVAKKLLDQVKKYKTTR 421

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BLAST of EWM29924.1 vs. NCBI_GenBank
Match: gi|585112508|gb|EWM29925.1| (Aminoacyl-tRNA synthetase, class Ic [Nannochloropsis gaditana])

HSP 1 Score: 841.262 bits (2172), Expect = 0.000e+0
Identity = 401/415 (96.63%), Postives = 403/415 (97.11%), Query Frame = 0

Query:    7 FSVQATARFSVLEAPGGTQRSSTSSSQGAHNNTKSTSSTVSHGPLSAGGTITRGANGLIEGKEYFVSPLSADAKYALARSVGEECIQEQELRLLLEKKPHPIVYDGFEPSGRMHIAQGVMRAINANKLTQCGCVFKFWVADWFALLNNKMGGDLKKIQTVGRYMIEIWRAVGMDMQNVEFLWASEEINAHSDEYWSRVMDIARINNLARIQRCCTIMGRKDTEEMSAAQIMYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCDSVKIKFKPVIISHHMLMGLKEGQEKMSKSDPDSAIFMEDSEADLKRKIKKAFCPPEVIEGNPIIDYVKHIIFGYYGKIEIEFQGNVRKEYVDYEEFEADYKGGKIHPGDLKPAVTMALNSILEPVRKHFESDPVAKKLLDQVKKYKTTR 421
             S   +    +L    GTQRSSTSSSQGAHNNTKSTSSTVSHGPLSAGGTITRGANGLIEGKEYFVSPLSADAKYALARSVGEECIQEQELRLLLEKKPHPIVYDGFEPSGRMHIAQGVMRAINANKLTQCGCVFKFWVADWFALLNNKMGGDLKKIQTVGRYMIEIWRAVGMDMQNVEFLWASEEINAHSDEYWSRVMDIARINNLARIQRCCTIMGRKDTEEMSAAQIMYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCDSVKIKFKPVIISHHMLMGLKEGQEKMSKSDPDSAIFMEDSEADLKRKIKKAFCPPEVIEGNPIIDYVKHIIFGYYGKIEIEFQGNVRKEYVDYEEFEADYKGGKIHPGDLKPAVTMALNSILEPVRKHFESDPVAKKLLDQVKKYKTTR
Sbjct:   28 LSRPVSPSLPLLRTAPGTQRSSTSSSQGAHNNTKSTSSTVSHGPLSAGGTITRGANGLIEGKEYFVSPLSADAKYALARSVGEECIQEQELRLLLEKKPHPIVYDGFEPSGRMHIAQGVMRAINANKLTQCGCVFKFWVADWFALLNNKMGGDLKKIQTVGRYMIEIWRAVGMDMQNVEFLWASEEINAHSDEYWSRVMDIARINNLARIQRCCTIMGRKDTEEMSAAQIMYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCDSVKIKFKPVIISHHMLMGLKEGQEKMSKSDPDSAIFMEDSEADLKRKIKKAFCPPEVIEGNPIIDYVKHIIFGYYGKIEIEFQGNVRKEYVDYEEFEADYKGGKIHPGDLKPAVTMALNSILEPVRKHFESDPVAKKLLDQVKKYKTTR 442

[Close]

BLAST of EWM29924.1 vs. NCBI_GenBank
Match: gi|673038208|ref|XP_008873065.1| (tyrosine-tRNA ligase [Aphanomyces invadans] >gi|574471182|gb|ETV98190.1| tyrosine-tRNA ligase [Aphanomyces invadans])

HSP 1 Score: 551.206 bits (1419), Expect = 0.000e+0
Identity = 266/388 (68.56%), Postives = 314/388 (80.93%), Query Frame = 0

Query:   39 TKSTSSTVSHGPLSAGGTITRGANGLIEGKEYFVSPLSADAKYALARSVGEECIQEQELRLLLEKKPHPIVYDGFEPSGRMHIAQGVMRAINANKLTQCGCVFKFWVADWFALLNNKMGGDLKKIQTVGRYMIEIWRAVGMDMQNVEFLWASEEINAHSDEYWSRVMDIARINNLARIQRCCTIMGRKDTEEMSAAQIMYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCDSVKIKFKPVIISHHMLMGLKEGQEKMSKSDPDSAIFMEDSEADLKRKIKKAFCPPEVIEGNPIIDYVKHIIF-----GYYGKIEIEFQGNVRKEYVDYEEFEADYKGGKIHPGDLKPAVTMALNSILEPVRKHFESDPVAKKLLDQVKKYKTTR 421
            T  +S  V+  P       T   + L E +++  S L+ D ++ L +SVGEECI+E+ELR LLEKK HPI YDGFEPSGRMHIAQGV+R IN NKLT  GC+F+FWVADWFALLNNKMGGDLKKI+ VG+YMIEIW+AVGM+M NV+FLWAS+EINAH+DEYW+RV+D+AR  N+ARIQRCCTIMGRK+ ++MSAAQ+MYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCD  KIKFKPVIISHHMLMGLK+GQEKMSKSDPDSAIFMED+ +D+ RKIKKA+CPP  ++GNPI+DY+KHIIF     G   K + EF G+  K Y+ Y+E  ADY    IHPGDLKP++T  LN ILEPVRKHFE    AKKLL ++KK+K TR
Sbjct:   33 TSKSSKKVAAAP-------TVYESRLHEVRDWKKSTLTLDERFELCKSVGEECIKEEELRALLEKKEHPICYDGFEPSGRMHIAQGVLRMINVNKLTSAGCIFRFWVADWFALLNNKMGGDLKKIRKVGQYMIEIWKAVGMNMDNVQFLWASDEINAHADEYWTRVIDVARKFNVARIQRCCTIMGRKEADDMSAAQMMYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCDEAKIKFKPVIISHHMLMGLKQGQEKMSKSDPDSAIFMEDTVSDVSRKIKKAYCPPGEVDGNPIMDYMKHIIFPMFPDGVVVKRKEEFGGD--KTYLTYDEMAADYLAEAIHPGDLKPSLTEHLNLILEPVRKHFEQGE-AKKLLAEIKKFKITR 410

[Close]

BLAST of EWM29924.1 vs. NCBI_GenBank
Match: gi|698818673|ref|XP_009842365.1| (tyrosine-tRNA ligase [Aphanomyces astaci] >gi|574102516|gb|ETV68066.1| tyrosine-tRNA ligase [Aphanomyces astaci])

HSP 1 Score: 551.206 bits (1419), Expect = 0.000e+0
Identity = 260/363 (71.63%), Postives = 307/363 (84.57%), Query Frame = 0

Query:   64 LIEGKEYFVSPLSADAKYALARSVGEECIQEQELRLLLEKKPHPIVYDGFEPSGRMHIAQGVMRAINANKLTQCGCVFKFWVADWFALLNNKMGGDLKKIQTVGRYMIEIWRAVGMDMQNVEFLWASEEINAHSDEYWSRVMDIARINNLARIQRCCTIMGRKDTEEMSAAQIMYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCDSVKIKFKPVIISHHMLMGLKEGQEKMSKSDPDSAIFMEDSEADLKRKIKKAFCPPEVIEGNPIIDYVKHIIF-----GYYGKIEIEFQGNVRKEYVDYEEFEADYKGGKIHPGDLKPAVTMALNSILEPVRKHFESDPVAKKLLDQVKKYKTTR 421
            L E +++  S LS D ++ L +SVGEECI+E+ELR+LLEKK HPI YDGFEPSGRMHIAQGV+R IN NKLT  GC+F+FWVADWFALLNNKMGGDLKKI+ VG+YMIEIW+AVGM+M NV+FLWAS+EIN+H+DEYW+RV+D+AR  N+ARIQRCCTIMGRK+ ++MSAAQ+MYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCD  KIKFKPVIISHHMLMGLK+GQEKMSKSDPDSAIFMED+ +D+ RKIKKA+CPP  ++GNPI+DY+KHIIF     G   K + ++ G+  K YV+Y+E   DY    IHPGDLKPA+T  LN ILEPVRKHFE    AKKLL ++KK+K TR
Sbjct:   51 LHEVRDWKKSALSLDERFELCKSVGEECIKEEELRVLLEKKEHPICYDGFEPSGRMHIAQGVLRMINVNKLTSAGCIFRFWVADWFALLNNKMGGDLKKIRKVGQYMIEIWKAVGMNMDNVQFLWASDEINSHADEYWTRVIDVARKFNVARIQRCCTIMGRKEADDMSAAQMMYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCDEAKIKFKPVIISHHMLMGLKQGQEKMSKSDPDSAIFMEDTASDVSRKIKKAYCPPAQVDGNPIMDYMKHIIFPMFPDGVVVKRKEDYGGD--KTYVEYDEMVVDYLSEAIHPGDLKPALTEYLNQILEPVRKHFEQGE-AKKLLAEIKKFKVTR 410

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BLAST of EWM29924.1 vs. NCBI_GenBank
Match: gi|298708484|emb|CBJ30608.1| (Tyrosine--tRNA ligase [Ectocarpus siliculosus])

HSP 1 Score: 544.273 bits (1401), Expect = 0.000e+0
Identity = 272/430 (63.26%), Postives = 321/430 (74.65%), Query Frame = 0

Query:    1 MSVDKRFSVQATARFSVLEAPGGTQ-RSSTSSSQGAHNNTKSTSSTVSHGPLSAGGTITRGANGLI-EGKEYFVSPLSA-----DAKYALARSVGEECIQEQELRLLLEKKPHPIVYDGFEPSGRMHIAQGVMRAINANKLTQCGCVFKFWVADWFALLNNKMGGDLKKIQTVGRYMIEIWRAVGMDMQNVEFLWASEEINAHSDEYWSRVMDIARINNLARIQRCCTIMGRKDTEEMSAAQIMYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCDSV--KIKFKPVIISHHMLMGLKEGQEKMSKSDPDSAIFMEDSEADLKRKIKKAFCPPEVIEGNPIIDYVKHIIFGYYGKIEIEFQGNVRKEYVDYEEFEADYKGGKIHPGDLKPAVTMALNSILEPVRKHFESDPVAKKLLDQVKKYKTTR 421
            M  +  F V  T++F+V +  G TQ   + SSS        + SST +      G +  +G   ++ E   + VS L A     + +Y L RSV +ECIQE+EL+ LLE + HPI YDGFEPSGRMHIAQGVMR IN NKLT+ GC FKFWVADWFA LNNKMGGDLKKIQTVG+YMIEIW+A GMDM NVEFLWASEEIN    EYW RVM++AR+NNL+R+QRC  IMGR +  EMS+AQI YPCMQCADVFFLKADICQLGLDQRKVNMLAREYCD    KIKFKPVI+SHHML GLKEGQ KMSKSDPDSAIFMED+ AD+KRKIKKA+CPPEV+EGNP++DY KH++F + G++ I F+      Y  Y++ E D+  GKIHP +LKPAVT ALN+IL+PVR HF     AKKLLD V+KYK TR
Sbjct:    1 MPANGSFVVNKTSKFAVFDVKGVTQDAGAASSSSSGAAAAAAGSSTTAAASSGKGKSSNKGTKEVVLEAPPFDVSQLKASECSLEERYELCRSVADECIQEEELKRLLEARAHPICYDGFEPSGRMHIAQGVMRVINVNKLTKAGCHFKFWVADWFAQLNNKMGGDLKKIQTVGKYMIEIWKATGMDMNNVEFLWASEEINRRPAEYWGRVMEVARLNNLSRVQRCGQIMGRAEAGEMSSAQIFYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCDMTKPKIKFKPVILSHHMLAGLKEGQAKMSKSDPDSAIFMEDTAADVKRKIKKAYCPPEVVEGNPVLDYCKHLLFAWSGELTISFREGEPITYTSYDDMEKDFVSGKIHPSELKPAVTDALNAILQPVRDHFAKGD-AKKLLDTVRKYKVTR 429

[Close]

BLAST of EWM29924.1 vs. NCBI_GenBank
Match: gi|1173958022|gb|OQS04446.1| (tyrosyl-tRNA synthetase [Thraustotheca clavata])

HSP 1 Score: 542.347 bits (1396), Expect = 0.000e+0
Identity = 260/419 (62.05%), Postives = 318/419 (75.89%), Query Frame = 0

Query:    8 SVQATARFSVLEAPGGTQRSSTSSSQGAHNNTKSTSSTVSHGPLSAGGTITRGANGLIEGKEYFVSPLSADAKYALARSVGEECIQEQELRLLLEKKPHPIVYDGFEPSGRMHIAQGVMRAINANKLTQCGCVFKFWVADWFALLNNKMGGDLKKIQTVGRYMIEIWRAVGMDMQNVEFLWASEEINAHSDEYWSRVMDIARINNLARIQRCCTIMGRKDTEEMSAAQIMYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCDSVKIKFKPVIISHHMLMGLKEGQEKMSKSDPDSAIFMEDSEADLKRKIKKAFCPPEVIEGNPIIDYVKHIIFGYYGKIEI-----EFQGNVRKEYVDYEEFEADYKGGKIHPGDLKPAVTMALNSILEPVRKHFESDPVAKKLLDQVKKYKTTR 421
            SV+A     V  A    + +   +        + T + V  G   A        + L E +E+  S L+ + ++ + RSVGEECI+++ELR LLEKK HPI YDGFEPSGRMHIAQG++R IN N+LT  GC+F+FWVADWFALLNNKMGGDLKKI+ VG+Y+IEIW+A GM+M+NV+FLWAS+EINAH+DEYW+RV+D+AR  N+ARIQRCCTIMGRK+ ++MSAAQ+MYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCD VKIK KPVIISHHMLMGLK+GQEKMSKSDPDSAIFMED+ +D+ RKIKKA+CPP  +  NPI+DY+KHI+F  + K  +     EF G+  K Y+ ++E  ADY    IHPGDLKP +T  LN ILEPVR+HF S    KKLL ++KKYK TR
Sbjct:    7 SVKAEIASKVEAAKASVEATVEVAKAKVEAAVEETKAKVEAGKPKAAPEPRVYESKLNEVREWKKSTLTLEERFEICRSVGEECIKDEELRALLEKKDHPICYDGFEPSGRMHIAQGILRMINVNRLTSAGCIFRFWVADWFALLNNKMGGDLKKIRKVGQYLIEIWKAAGMNMENVQFLWASDEINAHADEYWTRVIDVARRFNIARIQRCCTIMGRKEADDMSAAQLMYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCDEVKIKHKPVIISHHMLMGLKQGQEKMSKSDPDSAIFMEDTASDVSRKIKKAYCPPGQVNDNPILDYMKHIVFPLFTKGVVVKRKEEFGGD--KTYMTFDELAADYLTEAIHPGDLKPTLTDYLNQILEPVRQHF-SQGEPKKLLAEIKKYKITR 422

[Close]

BLAST of EWM29924.1 vs. NCBI_GenBank
Match: gi|971520003|dbj|GAQ78185.1| (Tyrosyl-tRNA synthetase [Klebsormidium nitens])

HSP 1 Score: 526.554 bits (1355), Expect = 0.000e+0
Identity = 248/352 (70.45%), Postives = 291/352 (82.67%), Query Frame = 0

Query:   75 LSADAKYALARSVGEECIQEQELRLLLEKKPHP-IVYDGFEPSGRMHIAQGVMRAINANKLTQCGCVFKFWVADWFALLNNKMGGDLKKIQTVGRYMIEIWRAVGMDMQNVEFLWASEEINAHSDEYWSRVMDIARINNLARIQRCCTIMGRKDTEEMSAAQIMYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCDSVKIKFKPVIISHHMLMGLKEGQEKMSKSDPDSAIFMEDSEADLKRKIKKAFCPPEVIEGNPIIDYVKHIIFGYYGKIEI----EFQGNVRKEYVDYEEFEADYKGGKIHPGDLKPAVTMALNSILEPVRKHFESDPVAKKLLDQVKKYKTTR 421
            LS D ++ALARSVGEECIQE EL  LL KKP P + YDGFEPSGR+HIAQGVM+A+N NKLT+ GC+FKFWVADWFA LNNKMGGDLKKIQTVGRYMIE+W+AVGMD+ NV+FLW+SEEIN+ + EYW  VMDIAR NNLARI RC  IMGR + +++SAAQI+YPCMQCAD+FFLKADICQLG+DQRKVNMLAREYCD +K K KP+I+SHHML GL++GQEKMSKSDP+SAIFMEDSEA++  KIKKA+CPP VI+GNPI +YVK ++  + GK+ +    E  GN  K Y D  E EADY  G +HPGDLK A++  LN IL+PVR HF+ DP AKKLL QVK YKTTR
Sbjct:   31 LSIDERFALARSVGEECIQEDELWNLLLKKPTPPVCYDGFEPSGRVHIAQGVMKALNVNKLTKAGCIFKFWVADWFAQLNNKMGGDLKKIQTVGRYMIEVWKAVGMDLTNVQFLWSSEEINSKAHEYWPLVMDIARKNNLARIVRCSQIMGRNEKDDLSAAQILYPCMQCADIFFLKADICQLGMDQRKVNMLAREYCDEIKRKNKPIILSHHMLPGLQQGQEKMSKSDPNSAIFMEDSEAEVNVKIKKAYCPPGVIQGNPIFEYVKFVLIPWSGKLNVVRAEEHGGN--KTYTDIAEVEADYTAGSLHPGDLKSALSRGLNEILQPVRDHFQKDPEAKKLLTQVKSYKTTR 380

[Close]

BLAST of EWM29924.1 vs. NCBI_GenBank
Match: gi|669142024|ref|XP_008606574.1| (tyrosyl-tRNA synthetase [Saprolegnia diclina VS20] >gi|530741858|gb|EQC40100.1| tyrosyl-tRNA synthetase [Saprolegnia diclina VS20])

HSP 1 Score: 525.398 bits (1352), Expect = 0.000e+0
Identity = 257/363 (70.80%), Postives = 303/363 (83.47%), Query Frame = 0

Query:   64 LIEGKEYFVSPLSADAKYALARSVGEECIQEQELRLLLEKKPHPIVYDGFEPSGRMHIAQGVMRAINANKLTQCGCVFKFWVADWFALLNNKMGGDLKKIQTVGRYMIEIWRAVGMDMQNVEFLWASEEINAHSDEYWSRVMDIARINNLARIQRCCTIMGRKDTEEMSAAQIMYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCDSVKIKFKPVIISHHMLMGLKEGQEKMSKSDPDSAIFMEDSEADLKRKIKKAFCPPEVIEGNPIIDYVKHIIF-----GYYGKIEIEFQGNVRKEYVDYEEFEADYKGGKIHPGDLKPAVTMALNSILEPVRKHFESDPVAKKLLDQVKKYKTTR 421
            L E +E+  S LS D ++ + RSVGEECI+++EL+LLLEKK HPI YDGFEPSGRMHIAQG++R IN N+LT  GC+F+FWVADWFALLNNKMGGDLKKI+ VG+YMIEIW+A GM+M NV+FLWAS+EINAH+DEYW+RV+D+AR  N+ARIQRCCTIMGRK+ ++MSAAQ+MYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCD VKIK KPVIISHHMLMGLK+GQEKMSKSDPDSAIFMED+ +D+ RKIKKA+CPP  +  NPI+DY+KHIIF     G   K + +F G+  K Y+ YEE  ADY    IHPGDLKP +T  LN ILEPVR+HF S   AKKLL ++KK+K TR
Sbjct:   41 LGEVREWKKSTLSLDERFEICRSVGEECIKDEELKLLLEKKDHPICYDGFEPSGRMHIAQGILRVINVNRLTSAGCIFRFWVADWFALLNNKMGGDLKKIRKVGQYMIEIWKAAGMNMDNVQFLWASDEINAHADEYWTRVIDVARRFNIARIQRCCTIMGRKEADDMSAAQLMYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCDEVKIKHKPVIISHHMLMGLKQGQEKMSKSDPDSAIFMEDTASDVSRKIKKAYCPPGQVNDNPIMDYMKHIIFPLFTTGVTVKRKEDFGGD--KTYLTYEELAADYAAEAIHPGDLKPTLTDYLNQILEPVRQHF-SQGEAKKLLAEIKKFKITR 400

[Close]

BLAST of EWM29924.1 vs. NCBI_GenBank
Match: gi|813173921|ref|XP_012204914.1| (tyrosyl-tRNA synthetase [Saprolegnia parasitica CBS 223.65] >gi|641530180|gb|KDO24317.1| tyrosyl-tRNA synthetase [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 524.628 bits (1350), Expect = 0.000e+0
Identity = 256/363 (70.52%), Postives = 303/363 (83.47%), Query Frame = 0

Query:   64 LIEGKEYFVSPLSADAKYALARSVGEECIQEQELRLLLEKKPHPIVYDGFEPSGRMHIAQGVMRAINANKLTQCGCVFKFWVADWFALLNNKMGGDLKKIQTVGRYMIEIWRAVGMDMQNVEFLWASEEINAHSDEYWSRVMDIARINNLARIQRCCTIMGRKDTEEMSAAQIMYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCDSVKIKFKPVIISHHMLMGLKEGQEKMSKSDPDSAIFMEDSEADLKRKIKKAFCPPEVIEGNPIIDYVKHIIF-----GYYGKIEIEFQGNVRKEYVDYEEFEADYKGGKIHPGDLKPAVTMALNSILEPVRKHFESDPVAKKLLDQVKKYKTTR 421
            L E +E+  S LS + ++ + RSVGEECI+++EL+LLLEKK HPI YDGFEPSGRMHIAQG++R IN N+LT  GC+F+FWVADWFALLNNKMGGDLKKI+ VG+YMIEIW+A GM+M NV+FLWAS+EINAH+DEYW+RV+D+AR  N+ARIQRCCTIMGRK+ ++MSAAQ+MYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCD VKIK KPVIISHHMLMGLK+GQEKMSKSDPDSAIFMED+ +D+ RKIKKA+CPP  +  NPI+DY+KHIIF     G   K + +F G+  K Y+ YEE  ADY    IHPGDLKP +T  LN ILEPVR+HF S   AKKLL ++KK+K TR
Sbjct:   41 LAEVREWKKSTLSLEERFEICRSVGEECIKDEELKLLLEKKDHPICYDGFEPSGRMHIAQGILRVINVNRLTSAGCIFRFWVADWFALLNNKMGGDLKKIRKVGQYMIEIWKAAGMNMDNVQFLWASDEINAHADEYWTRVIDVARRFNIARIQRCCTIMGRKEADDMSAAQLMYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCDEVKIKHKPVIISHHMLMGLKQGQEKMSKSDPDSAIFMEDTASDVSRKIKKAYCPPGQVNDNPIMDYMKHIIFPLFTTGVTVKRKEDFGGD--KTYLTYEELAADYAAEAIHPGDLKPTLTDYLNQILEPVRQHF-SQGEAKKLLAEIKKFKITR 400

[Close]

BLAST of EWM29924.1 vs. NCBI_GenBank
Match: gi|1173952929|gb|OQS00504.1| (tyrosyl-tRNA synthetase [Achlya hypogyna])

HSP 1 Score: 523.472 bits (1347), Expect = 0.000e+0
Identity = 259/363 (71.35%), Postives = 301/363 (82.92%), Query Frame = 0

Query:   64 LIEGKEYFVSPLSADAKYALARSVGEECIQEQELRLLLEKKPHPIVYDGFEPSGRMHIAQGVMRAINANKLTQCGCVFKFWVADWFALLNNKMGGDLKKIQTVGRYMIEIWRAVGMDMQNVEFLWASEEINAHSDEYWSRVMDIARINNLARIQRCCTIMGRKDTEEMSAAQIMYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCDSVKIKFKPVIISHHMLMGLKEGQEKMSKSDPDSAIFMEDSEADLKRKIKKAFCPPEVIEGNPIIDYVKHIIF-----GYYGKIEIEFQGNVRKEYVDYEEFEADYKGGKIHPGDLKPAVTMALNSILEPVRKHFESDPVAKKLLDQVKKYKTTR 421
            L E +E+  S LS D ++ L RSVGEECI+E+ELRLLLEKK HPI YDGFEPSGRMHIAQG++R IN N+LT  GC+F+FWVADWFALLNNKMGGDLKKI+ VG+YMIEIW+A GM+M NV+FLWAS+EINAH+DEYW+RV+D+AR  N+ARIQRCCTIMGRK+ ++MSAAQ+MYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCD VKIK KPVIISHHMLMGLK+GQEKMSKSDPDSAIFMED+ +D+ RKIKKA+CPP  +  NPI+DY+KHIIF     G   K + +F G+  K Y+ YEE  ADY    IHPGDLKP +T  LN ILEPVR HF S    KKLL ++KK+K TR
Sbjct:   47 LAEVREWKKSELSLDERFELCRSVGEECIKEEELRLLLEKKDHPICYDGFEPSGRMHIAQGILRVINVNRLTSAGCIFRFWVADWFALLNNKMGGDLKKIRKVGQYMIEIWKAAGMNMDNVQFLWASDEINAHADEYWTRVIDVARRFNIARIQRCCTIMGRKEADDMSAAQLMYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCDEVKIKHKPVIISHHMLMGLKQGQEKMSKSDPDSAIFMEDTASDVSRKIKKAYCPPGQVNDNPIMDYMKHIIFPLFTTGVTVKRKEDFGGD--KTYMTYEELAADYLAEAIHPGDLKPTLTDYLNQILEPVRAHF-SQGEPKKLLAEIKKFKITR 406

The following BLAST results are available for this feature:

BLAST of EWM29924.1 vs. NCBI_GenBank

BLAST of EWM29924.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585112507\|gb\|EWM29924.1\|	0.000e+0	100.00	Aminoacyl-tRNA synthetase, class Ic [Nannochlorops...	[more]
gi\|585112508\|gb\|EWM29925.1\|	0.000e+0	96.63	Aminoacyl-tRNA synthetase, class Ic [Nannochlorops...	[more]
gi\|673038208\|ref\|XP_008873065.1\|	0.000e+0	68.56	tyrosine-tRNA ligase [Aphanomyces invadans] >gi\|57...	[more]
gi\|698818673\|ref\|XP_009842365.1\|	0.000e+0	71.63	tyrosine-tRNA ligase [Aphanomyces astaci] >gi\|5741...	[more]
gi\|298708484\|emb\|CBJ30608.1\|	0.000e+0	63.26	Tyrosine--tRNA ligase [Ectocarpus siliculosus]	[more]
gi\|1173958022\|gb\|OQS04446.1\|	0.000e+0	62.05	tyrosyl-tRNA synthetase [Thraustotheca clavata]	[more]
gi\|971520003\|dbj\|GAQ78185.1\|	0.000e+0	70.45	Tyrosyl-tRNA synthetase [Klebsormidium nitens]	[more]
gi\|669142024\|ref\|XP_008606574.1\|	0.000e+0	70.80	tyrosyl-tRNA synthetase [Saprolegnia diclina VS20]...	[more]
gi\|813173921\|ref\|XP_012204914.1\|	0.000e+0	70.52	tyrosyl-tRNA synthetase [Saprolegnia parasitica CB...	[more]
gi\|1173952929\|gb\|OQS00504.1\|	0.000e+0	71.35	tyrosyl-tRNA synthetase [Achlya hypogyna]	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna768	rna768	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications