rna768, rna768 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna768
Unique Name	rna768
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1775
Alignment location	CM002456.1:375767..377541 +

Link to JBrowse

Properties


Property Name	Value
Product	Aminoacyl-tRNA synthetase, class Ic
Orig transcript id	gnl\|cribi\|Naga_100035g30.3388.mrna
Orig protein id	gnl\|cribi\|Naga_100035g30.3388
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:375767..377541 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100035g30	gene735	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna768	rna768-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29924.1	cds768	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:375767..377541+
coding sequence from alignment at CM002456.1:375767..377541+

mRNA sequence

>rna768 ID=rna768|Name=rna768|organism=Nannochloropsis gaditana|type=mRNA|length=1775bp
CATGCTTTTTGGAAACTGGAAGCCGAGAGGGATGTGGCAGGGTGTTTGTT
CCCAGCCTCGCCCTTTGTTGCAACGCTTTGTCATCCATCGAACACATTTG
ATGATCGTGATCGTAGACTTTATGCTCGAAAATTCACACACAGACAAATA
TGTCGGTCGATAAGCGCTTCTCGGTCCAAGCCACGGCGCGTTTTAGCGTC
CTCGAAGCTCCAGGAGGTAGGTACGCCCCACCTGCCTATGCGCCTGCCGT
GGCACCTCGTTTTCCTTCATCCCTTTTCGCGCCGTGGACGCCCCGATGCC
TTCAAATGCATGTTTGCATAGTGGGAGTAACATTCAGCGGTACAGTATTA
TAAATTTATGGAAGGACGGTACGACCCTCTCACGCCCTGTCTCCCCCTCA
CTACCTTTACTCCGCACCGCCCCAGGCACACAAAGGTCTTCTACCTCTTC
ATCTCAAGGAGCTCATAATAATACCAAATCCACGTCTTCAACGGTCTCCC
ATGGGCCGCTTTCTGCCGGAGGCACCATTACACGGGGAGCAAACGGTCTT
ATTGAAGGGAAGGAATACTTTGTCTCCCCGCTTTCCGCAGACGCCAAGTA
TGCCCTGGCCCGTAGTGTGGGAGAGGAGTGCATCCAAGAGCAGGAACTGC
GGTTGCTCCTGGAGAAAAAACCTCATCCCATTGTATACGACGGATTTGAA
CCTTCGGGACGTATGCATATAGCTCAGGGGGTGATGCGTGCCATCAATGC
CAACAAACTCACACAGTGTGGATGCGTCTTCAAATTCTGGGTGGCAGACT
GGTTCGCGTTGTTGAACAACAAAATGGGTGGAGACTTGAAAAAAATTCAA
ACGGTTGGGAGGTACATGATTGAAATCTGGCGGGCGGTCGGAATGGACAT
GCAAAACGTGGAGTTTTTGTGGGCGTCGGAGGAGATCAATGCCCACTCGG
ACGAATACTGGTCTCGAGTCATGGATATTGCCCGCATCAACAACCTGGCC
AGGATACAACGCTGCTGTACGATTATGGGGCGAAAAGATACGGAGGAGAT
GAGTGCCGCGCAAATCATGTACCCGTGTATGCAATGTGCCGACGTGTTCT
TCCTTAAAGCGGACATTTGCCAACTAGGCCTGGATCAACGGAAAGTGAAC
ATGCTGGCCCGCGAATACTGCGATAGCGTGAAAATCAAATTTAAGCCAGT
CATTATCTCGCATCACATGCTCATGGGCTTGAAAGAAGGTCAAGAAAAGA
TGAGTAAGTCTGACCCAGACTCCGCCATTTTCATGGAGGATTCCGAAGCG
GATTTGAAACGGAAAATCAAGAAAGCGTTCTGCCCTCCGGAAGTCATTGA
AGGTAATCCAATTATTGATTACGTGAAGCATATTATCTTTGGATACTACG
GTAAAATTGAGATCGAATTTCAAGGGAATGTGAGAAAAGAGTACGTGGAT
TACGAAGAGTTCGAGGCAGACTACAAGGGTGGGAAGATTCATCCGGGAGA
CTTAAAACCGGCCGTGACGATGGCACTGAATAGCATTTTGGAGCCAGTTC
GAAAGCATTTTGAAAGCGATCCGGTAGCAAAGAAACTGTTGGATCAGGTA
AAGAAATACAAGACGACCCGGTAGGCGAACGCAATAGTGAATGAGGAGGT
TAAATGAATGGGATGAGAAGGGACATAAAAATAGACTATCAACCTTTTCA
GAGCTAATGTATCCTTTTCAAACTGCATTAAGTATAAAGTAATGTTGAAA
ATGCGACACTGCAGCGATGGATGAT

protein sequence of rna768

>rna768-protein ID=rna768-protein|Name=rna768|organism=Nannochloropsis gaditana|type=polypeptide|length=421bp
MSVDKRFSVQATARFSVLEAPGGTQRSSTSSSQGAHNNTKSTSSTVSHGP
LSAGGTITRGANGLIEGKEYFVSPLSADAKYALARSVGEECIQEQELRLL
LEKKPHPIVYDGFEPSGRMHIAQGVMRAINANKLTQCGCVFKFWVADWFA
LLNNKMGGDLKKIQTVGRYMIEIWRAVGMDMQNVEFLWASEEINAHSDEY
WSRVMDIARINNLARIQRCCTIMGRKDTEEMSAAQIMYPCMQCADVFFLK
ADICQLGLDQRKVNMLAREYCDSVKIKFKPVIISHHMLMGLKEGQEKMSK
SDPDSAIFMEDSEADLKRKIKKAFCPPEVIEGNPIIDYVKHIIFGYYGKI
EIEFQGNVRKEYVDYEEFEADYKGGKIHPGDLKPAVTMALNSILEPVRKH
FESDPVAKKLLDQVKKYKTTR

mRNA from alignment at CM002456.1:375767..377541+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna768 ID=rna768|Name=rna768|organism=Nannochloropsis gaditana|type=mRNA|length=1775bp|location=Sequence derived from alignment at CM002456.1:375767..377541+ (Nannochloropsis gaditana)
CATGCTTTTTGGAAACTGGAAGCCGAGAGGGATGTGGCAGGGTGTTTGTT
CCCAGCCTCGCCCTTTGTTGCAACGCTTTGTCATCCATCGAACACATTTG
ATGATCGTGATCGTAGACTTTATGCTCGAAAATTCACACACAGACAAATA
TGTCGGTCGATAAGCGCTTCTCGGTCCAAGCCACGGCGCGTTTTAGCGTC
CTCGAAGCTCCAGGAGGTAGGTACGCCCCACCTGCCTATGCGCCTGCCGT
GGCACCTCGTTTTCCTTCATCCCTTTTCGCGCCGTGGACGCCCCGATGCC
TTCAAATGCATGTTTGCATAGTGGGAGTAACATTCAGCGGTACAGTATTA
TAAATTTATGGAAGGACGGTACGACCCTCTCACGCCCTGTCTCCCCCTCA
CTACCTTTACTCCGCACCGCCCCAGGCACACAAAGGTCTTCTACCTCTTC
ATCTCAAGGAGCTCATAATAATACCAAATCCACGTCTTCAACGGTCTCCC
ATGGGCCGCTTTCTGCCGGAGGCACCATTACACGGGGAGCAAACGGTCTT
attgaagggaaggaatacTTTGTCTCCCCGCTTTCCGCAGACGCCAAGTA
TGCCCTGGCCCGTAgtgtgggagaggagtgCATCCAAGAGCAGGAACTGC
GGTTGCTCCTGGAGAAAAAACCTCATCCCATTGTATACGACGGATTTGAA
CCTTCGGGACGTATGCATATAGCTCAGGGGGTGATGCGTGCCATCAATGC
CAACAAACTCACACAGTGTGGATGCGTCTTCAAATTCTGGGTGGCAGACT
GGTTCGCGTTGTTGAACAACAAAATGGGTGGAGACTTGAAAAAAATTCAA
ACGGTTGGGAGGTACATGATTGAAATCTGGCGGGCGGTCGGAATGGACAT
GCAAAACGTGGAGTTTTTGTGGGCGTCGGAGGAGATCAATGCCCACTCGG
ACGAATACTGGTCTCGAGTCATGGATATTGCCCGCATCAACAACCTGGCC
AGGATACAACGCTGCTGTACGATTATGGGGCGAAAAGATACGGAGGAGAT
GAGTGCCGCGCAAATCATGTACCCGTGTATGCAATGTGCCGACGTGTTCT
TCCTTAAAGCGGACATTTGCCAACTAGGCCTGGATCAACGGAAAGTGAAC
ATGCTGGCCCGCGAATACTGCGATAGCGTGAAAATCAAATTTAAGCCAGT
CATTATCTCGCATCACATGCTCATGGGCTTGAAAGAAGGTCAAGAAAAGA
TGAGTAAGTCTGACCCAGACTCCGCCATTTTCATGGAGGATTCCGAAGCG
GATTTGAAACGGAAAATCAAGAAAGCGTTCTGCCCTCCGGAAGTCATTGA
AGGTAATCCAATTATTGATTACGTGAAGCATATTATCTTTGGATACTACG
GTAAAATTGAGATCGAATTTCAAGGGAATGTGAGAAAAGAGTACGTGGAT
TACGAAGAGTTCGAGGCAGACTACAAGGGTGGGAAGATTCATCCGGGAGA
CTTAAAACCGGCCGTGACGATGGCACTGAATAGCATTTTGGAGCCAGTTC
GAAAGCATTTTGAAAGCGATCCGGTAGCAAAGAAACTGTTGGATCAGGTA
AAGAAATACAAGACGACCCGGTAGGCGAACGCAATAGTGAATGAGGAGGT
TAAATGAATGGGATGAGAAGGGACATAAAAATAGACTATCAACCTTTTCA
GAGCTAATGTATCCTTTTCAAACTGCATTAAGTATAAAGTAATGTTGAAA
ATGCGACACTGCAGCGATGGATGAT

Coding sequence (CDS) from alignment at CM002456.1:375767..377541+

>rna768 ID=rna768|Name=rna768|organism=Nannochloropsis gaditana|type=CDS|length=2532bp|location=Sequence derived from alignment at CM002456.1:375767..377541+ (Nannochloropsis gaditana)
ATGTCGGTCGATAAGCGCTTCTCGGTCCAAGCCACGGCGCGTTTTAGCGT
CCTCGAAGCTCCAGGAGGCACACAAAGGTCTTCTACCTCTTCATCTCAAG
GAGCTCATAATAATACCAAATCCACGTCTTCAACGGTCTCCCATGGGCCG
CTTTCTGCCGGAGGCACCATTACACGGGGAGCAAACGGTCTTattgaagg
gaaggaatacTTTGTCTCCCCGCTTTCCGCAGACGCCAAGTATGCCCTGG
CCCGTAgtgtgggagaggagtgCATCCAAGAGCAGGAACTGCGGTTGCTC
CTGGAGAAAAAACCTCATCCCATTGTATACGACGGATTTGAACCTTCGGG
ACGTATGCATATAGCTCAGGGGGTGATGCGTGCCATCAATGCCAACAAAC
TCACACAGTGTGGATGCGTCTTCAAATTCTGGGTGGCAGACTGGTTCGCG
TTGTTGAACAACAAAATGGGTGGAGACTTGAAAAAAATTCAAACGGTTGG
GAGGTACATGATTGAAATCTGGCGGGCGGTCGGAATGGACATGCAAAACG
TGGAGTTTTTGTGGGCGTCGGAGGAGATCAATGCCCACTCGGACGAATAC
TGGTCTCGAGTCATGGATATTGCCCGCATCAACAACCTGGCCAGGATACA
ACGCTGCTGTACGATTATGGGGCGAAAAGATACGGAGGAGATGAGTGCCG
CGCAAATCATGTACCCGTGTATGCAATGTGCCGACGTGTTCTTCCTTAAA
GCGGACATTTGCCAACTAGGCCTGGATCAACGGAAAGTGAACATGCTGGC
CCGCGAATACTGCGATAGCGTGAAAATCAAATTTAAGCCAGTCATTATCT
CGCATCACATGCTCATGGGCTTGAAAGAAGGTCAAGAAAAGATGAGTAAG
TCTGACCCAGACTCCGCCATTTTCATGGAGGATTCCGAAGCGGATTTGAA
ACGGAAAATCAAGAAAGCGTTCTGCCCTCCGGAAGTCATTGAAGGTAATC
CAATTATTGATTACGTGAAGCATATTATCTTTGGATACTACGGTAAAATT
GAGATCGAATTTCAAGGGAATGTGAGAAAAGAGTACGTGGATTACGAAGA
GTTCGAGGCAGACTACAAGGGTGGGAAGATTCATCCGGGAGACTTAAAAC
CGGCCGTGACGATGGCACTGAATAGCATTTTGGAGCCAGTTCGAAAGCAT
TTTGAAAGCGATCCGGTAGCAAAGAAACTGTTGGATCAGGTAAAGAAATA
CAAGACGACCCGGTAGATGTCGGTCGATAAGCGCTTCTCGGTCCAAGCCA
CGGCGCGTTTTAGCGTCCTCGAAGCTCCAGGAGGCACACAAAGGTCTTCT
ACCTCTTCATCTCAAGGAGCTCATAATAATACCAAATCCACGTCTTCAAC
GGTCTCCCATGGGCCGCTTTCTGCCGGAGGCACCATTACACGGGGAGCAA
ACGGTCTTattgaagggaaggaatacTTTGTCTCCCCGCTTTCCGCAGAC
GCCAAGTATGCCCTGGCCCGTAgtgtgggagaggagtgCATCCAAGAGCA
GGAACTGCGGTTGCTCCTGGAGAAAAAACCTCATCCCATTGTATACGACG
GATTTGAACCTTCGGGACGTATGCATATAGCTCAGGGGGTGATGCGTGCC
ATCAATGCCAACAAACTCACACAGTGTGGATGCGTCTTCAAATTCTGGGT
GGCAGACTGGTTCGCGTTGTTGAACAACAAAATGGGTGGAGACTTGAAAA
AAATTCAAACGGTTGGGAGGTACATGATTGAAATCTGGCGGGCGGTCGGA
ATGGACATGCAAAACGTGGAGTTTTTGTGGGCGTCGGAGGAGATCAATGC
CCACTCGGACGAATACTGGTCTCGAGTCATGGATATTGCCCGCATCAACA
ACCTGGCCAGGATACAACGCTGCTGTACGATTATGGGGCGAAAAGATACG
GAGGAGATGAGTGCCGCGCAAATCATGTACCCGTGTATGCAATGTGCCGA
CGTGTTCTTCCTTAAAGCGGACATTTGCCAACTAGGCCTGGATCAACGGA
AAGTGAACATGCTGGCCCGCGAATACTGCGATAGCGTGAAAATCAAATTT
AAGCCAGTCATTATCTCGCATCACATGCTCATGGGCTTGAAAGAAGGTCA
AGAAAAGATGAGTAAGTCTGACCCAGACTCCGCCATTTTCATGGAGGATT
CCGAAGCGGATTTGAAACGGAAAATCAAGAAAGCGTTCTGCCCTCCGGAA
GTCATTGAAGGTAATCCAATTATTGATTACGTGAAGCATATTATCTTTGG
ATACTACGGTAAAATTGAGATCGAATTTCAAGGGAATGTGAGAAAAGAGT
ACGTGGATTACGAAGAGTTCGAGGCAGACTACAAGGGTGGGAAGATTCAT
CCGGGAGACTTAAAACCGGCCGTGACGATGGCACTGAATAGCATTTTGGA
GCCAGTTCGAAAGCATTTTGAAAGCGATCCGGTAGCAAAGAAACTGTTGG
ATCAGGTAAAGAAATACAAGACGACCCGGTAG

Synonyms

Publications