rna738, rna738 (mRNA) Nannochloropsis gaditana

Overview
Namerna738
Unique Namerna738
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1215
Alignment locationCM002456.1:292070..294003 +

Link to JBrowse

Properties
Property NameValue
Productfructosamine 3 kinase
Orig transcript idgnl|cribi|Naga_100351g5.7478.mrna
Orig protein idgnl|cribi|Naga_100351g5.7478
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:292070..294003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100351g5gene707Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna738rna738-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29937.1cds738Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna738 ID=rna738|Name=rna738|organism=Nannochloropsis gaditana|type=mRNA|length=1215bp
ATGGCAGCCTCCCCAGTTCAGTCCAAGCATGAAATCAGTGAAGCTGGGGA
GGCAGATTTATATGGCGCTTGCCGTCCTGTGAAGAGTTTCCAAAAGCTTA
ATCAAATCGGGGAAGGAGCGTATGGTACTGTGTATCGTGGCATCGATAAA
GCAAACGGACGCATGGTGGCCTTAAAGCGTGTGATTCTACATAACGAGAA
GCAAGATGGATTCCCCTTGACGTCCTTGAGGGAAATTCGTACGCTTAAAT
TGATAGGTCGTCACCCTCATTGCGTCCGATTGGAAGAGATAGCAGTGGGG
AGAAAAAGAGACGGTGTCTTCTTGGTCTTTGAATACTGCGAGCACGATAT
GGCGCACCTGATAGACCACATGAATACGCGCTTCACATCTTCCGAGGTCA
AGAACCTCCTGTTGCAGCTTCTGCGTGGCGTGGCACATTTGCACGAGCTA
TGGATCATCCATCGTGACATCAAAATGAGCAATTTGCTCTACACCAACGC
AGGCCGGCTCAAGCTCGCCGACTTTGGACTTGCTCGTTTATACGGTGCCC
CTCCCGCTCCTATGACCCCCAAGGTGGTCACTCTGTGGTACAGGGCCCCT
GAGCTATTGCTGGGGTCGGAGACCTACGACGTGTCTATTGACATGTGGGC
CGTGGGGTGCATTTTCGGGGAGCTCTTGGAATACAAGCCCCTGTTGCCCG
GCGGAGACGAACTGGAGCAACTCAAAAAGATCTTTGAGCTGCTGGGGAGC
CCAAATGAGCGGATCTGGCCGGGTGTGGAGTCCCTGCCTCACGTAGCTTC
GGGAATGGTCTCGCTGCGTCCGGACAGGTACCCCTACAATACAGTGGCCG
CGCGCCTCCCGCGTTTGAGCGAAGGCGGCGTGGACTTGCTCAATTCTTTC
TTGGCATATGACCCACAAAAGCGGTTGAATGCCACGGATGCTCAGAGACA
CGCCTTCTTTACGAACGAGCGGCCATTGCCTAAGGAAGACTCTTTGATGC
CTACGTTTCCGTCCCGTCATGATGAGATGGAAGCCAGAGAAAAGGAAAGA
GCTCGGCTTTCAGAGGGTCAAAAGTCTTCCACTGCCATGTTGCTCAAGAG
TGCTTTATTTTCTTCGTCCTCCGCGTCTAGAAAGGGACTGGGAGGAAGAG
AAGGGTTGAAGACCTCAGGGGGAACCATTATGCCGGTAGTGAAGAAGGCT
AAGCATGACGGATGA
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protein sequence of rna738

>rna738-protein ID=rna738-protein|Name=rna738|organism=Nannochloropsis gaditana|type=polypeptide|length=425bp
MIFRNVVCIFGALFVAFGGVQAFLLPSVQSCSALSIWPRGVARQNLKCNV
IPAQEQQSDHSQSKVQGNLADVIADARAQEEAEKIMKELEDGAVREMGEA
QAAGPKYMPSTEPDDPIIMSLQKVLGVGRVEKWELLDSRWNGNEVFKYTT
DKGLFFIKLNRVEDPSVFLTEAVGLSALAATNTLPCPKPLHLGKLPKVGD
VGPGAFMVLEHLKLLPFGIMRTDMQQRLGEQLAALHLDQTHAALHRGRFG
FSVSNFLALTPLNNTWTDDWPSFLARRLESQVAALYQEKQYGRAALNETD
MELRILGSRVIRAVPALLAGVKVSPSLIHGDLWIGNAGATEAGPVIFDPA
CFFGHHEMELAMMTLFGGFRDEFWNAYHARLPKEKGFETRQKLYQFYYYL
NQLNLFGDAGVKRTCVRLAEELLLI
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mRNA from alignment at CM002456.1:292070..294003+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna738 ID=rna738|Name=rna738|organism=Nannochloropsis gaditana|type=mRNA|length=1934bp|location=Sequence derived from alignment at CM002456.1:292070..294003+ (Nannochloropsis gaditana)
TGAGTATTTGTCGGCTAGAGCAAAAATGTGGCCATCGTAGCTTTTTCACA
CAATATTACTTCCTGTTCGAGCGATATTTCCCAGTCTGTTGAAAGGCATT
CATAATATATTTGTAGCCGTAGTCatcgggaaggggaggttaacGCAGCA
GAGAAGGGAACGGCGATATCTTCAACATCAATGACCGGCCGTGCACGACC
CTCTGCTGCCAAATCCCACGCACCCTGACATTCCCCTGCATCCCAATAAT
ATCTATACGAAAAGGCTTGACGCTTTGTTCGTATTTTGCCATGATCTTTC
GGAACGTGGTGTGTATTTTCGGGGCGCTCTTCGTAGCATTCGGCGGCGTC
CAAgcattccttctcccgtcAGTCCAGTCCTGTTCCGCCTTGAGCATCTG
GCCCCGGGGTGTCGCGCGTCAGAACTTAAAATGCAACGTCATACCCGCAC
AAGAGCAGCAGAGCGATCATTCGCAATCTAAAGTGCAAGGCAATTTGGCT
GATGTGATCGCAGACGCCCGCgcccaggaggaagcggaaaaaaTCATGAA
GGAACTGGAGGACGGCGCTGTTCGCGAAATGGGAGAAGCACAGGCAGCGG
GTCCTAAATATATGCCGAGCACCGAGCCTGATGATCCCATTATCATGTCT
TTGCAAAAAGTCTTGGGTGTAGGACGTGTGGAGAAATGGGAGCTCCTGGA
TTCCCGGTGGAACGGGAACGAGGTCTTCAAGTACACGACAGACAAGGGAC
TCTTTTTCATCAAACTCAATCGCGTCGAAGACCCCTCTGTGTTTCTGACT
GAGGCGGTGGGCTTGAGTGCCTTGGCCGCGACTAACACGCTCCCCTGTCC
CAAGCCTCTCCACCTGGGGAAGCTTCCCAAAGTCGGGGACGTGGGTCCGG
GTGCCTTCATGGTGCTGGAGCATTTGAAACTCCTGCCTTTTGGAATCATG
CGTACTGACATGCAGCAACGCCTAGGAGAGCAATTGGCCGCCCTTCACCT
CGACCAAACCCATGCCGCCCTCCACCGGGGCAGGTTCGGATTTTCCGTCT
CGAATTTTCTTGCGTTGACCCCTCTGAACAACACCTGGACCGATGACTGG
CCTTCCTTTCTGGCCCGTCGCCTCGAGTCCCAGGTGGCGGCCTTGTACCA
AGAAAAGCAGTACGGTCGTGCTGCACTCAATGAAACGGACATGGAGCTGC
GCATATTGGGCTCTCGCGTCATCCGGGCGGTGCCCGCCTTGTTGGCAGGG
GTCAAGGTGTCCCCATCTCTTATTCACGGTGATCTATGGATTGGCAACGC
CGGTGCTACGGAGGCTGGTCCCGTGATCTTCGACCCTGCCTGTTTCTTTG
GCCATCACGAGATGGAACTGGCGATGATGACTTTGTTTGGGGGCTTTCGC
GACGAGTTTTGGAACGCGTACCACGCGCGTTTGCCGAAAGAAAAAGGCTT
TGAGACCCGTCAGAAACTCTATCAGTTCTACTACTATTTGAACCAATTGA
ATCTTTTCGGGGACGCGGGGGTGAAGAGGACGTGCGTGCGCCTGGCCGAG
GAGCTGTTATTGATTTAGCGTGGcgaagcagggaaggaaaagcagcaTGT
CTTTCTAAGTAGTAAGAAATAGCAGCATGAAGCGTCTTAAAAAAGGGAAT
TTTGCGTTTTTGAAGGCTTACGAGCGCCATTTTGCTGTGACTGATTAAAA
GTGACAGTCGGCGGAAAGCGTTACATTATCCTAGAAATATCATCTCTCCT
GATGCGAAAATCAAATCGTTCAAAATATTCCTCGATGATTTTATGTATGA
AGACATATTATCTGTAGAGTTCGCGATCCAAGTGCGCATTGCTTTCTGTT
TAACAATGTAGTTTCAGCATGAGGTAGGACTCATGAGTGGACGTGCGCTA
AAATCTGGGACAACAACTGAAAACTTTGCACCAA
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Coding sequence (CDS) from alignment at CM002456.1:292070..294003+

>rna738 ID=rna738|Name=rna738|organism=Nannochloropsis gaditana|type=CDS|length=1278bp|location=Sequence derived from alignment at CM002456.1:292070..294003+ (Nannochloropsis gaditana)
ATGATCTTTCGGAACGTGGTGTGTATTTTCGGGGCGCTCTTCGTAGCATT
CGGCGGCGTCCAAgcattccttctcccgtcAGTCCAGTCCTGTTCCGCCT
TGAGCATCTGGCCCCGGGGTGTCGCGCGTCAGAACTTAAAATGCAACGTC
ATACCCGCACAAGAGCAGCAGAGCGATCATTCGCAATCTAAAGTGCAAGG
CAATTTGGCTGATGTGATCGCAGACGCCCGCgcccaggaggaagcggaaa
aaaTCATGAAGGAACTGGAGGACGGCGCTGTTCGCGAAATGGGAGAAGCA
CAGGCAGCGGGTCCTAAATATATGCCGAGCACCGAGCCTGATGATCCCAT
TATCATGTCTTTGCAAAAAGTCTTGGGTGTAGGACGTGTGGAGAAATGGG
AGCTCCTGGATTCCCGGTGGAACGGGAACGAGGTCTTCAAGTACACGACA
GACAAGGGACTCTTTTTCATCAAACTCAATCGCGTCGAAGACCCCTCTGT
GTTTCTGACTGAGGCGGTGGGCTTGAGTGCCTTGGCCGCGACTAACACGC
TCCCCTGTCCCAAGCCTCTCCACCTGGGGAAGCTTCCCAAAGTCGGGGAC
GTGGGTCCGGGTGCCTTCATGGTGCTGGAGCATTTGAAACTCCTGCCTTT
TGGAATCATGCGTACTGACATGCAGCAACGCCTAGGAGAGCAATTGGCCG
CCCTTCACCTCGACCAAACCCATGCCGCCCTCCACCGGGGCAGGTTCGGA
TTTTCCGTCTCGAATTTTCTTGCGTTGACCCCTCTGAACAACACCTGGAC
CGATGACTGGCCTTCCTTTCTGGCCCGTCGCCTCGAGTCCCAGGTGGCGG
CCTTGTACCAAGAAAAGCAGTACGGTCGTGCTGCACTCAATGAAACGGAC
ATGGAGCTGCGCATATTGGGCTCTCGCGTCATCCGGGCGGTGCCCGCCTT
GTTGGCAGGGGTCAAGGTGTCCCCATCTCTTATTCACGGTGATCTATGGA
TTGGCAACGCCGGTGCTACGGAGGCTGGTCCCGTGATCTTCGACCCTGCC
TGTTTCTTTGGCCATCACGAGATGGAACTGGCGATGATGACTTTGTTTGG
GGGCTTTCGCGACGAGTTTTGGAACGCGTACCACGCGCGTTTGCCGAAAG
AAAAAGGCTTTGAGACCCGTCAGAAACTCTATCAGTTCTACTACTATTTG
AACCAATTGAATCTTTTCGGGGACGCGGGGGTGAAGAGGACGTGCGTGCG
CCTGGCCGAGGAGCTGTTATTGATTTAG
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Synonyms
Publications