rna734, rna734 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna734
Unique Name	rna734
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1356
Alignment location	CM002456.1:283215..285782 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100510g5.4379.mrna
Orig protein id	gnl\|cribi\|Naga_100510g5.4379
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:283215..285782 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100510g5	gene703	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna734	rna734-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29940.1	cds734	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:283215..285782-
coding sequence from alignment at CM002456.1:283215..285782-

mRNA sequence

>rna734 ID=rna734|Name=rna734|organism=Nannochloropsis gaditana|type=mRNA|length=1356bp
ATGACACGCCAAGGCTGGTTTGTTCTTGGCGTGGCTGCACACTTCACCAT
CGTCCTTCAAGCCTTTCACGTCCGACTTGTCCCAAAGCACGCCCTTCCGG
CATTAGCCAGGCGCTCCCCCGTTTCCAGCTTGATCTTCGGCCCCCCCTCC
AGTCATGGCCTGCACCACTCAAGAATAAGGAGCTCAGGGTTCGCAATGTA
CAACTCGCCCGACGATGGGACCAGCAGCGGGCAAAGCGTGGTGGTGGAGG
AGGTTGAGAAGGGGGAGACGGATCTTGAATTGAACGATACCGCAGTGCTC
ACGGCTTCTGTCGGCAGCCCCGCCACGGAGACGGCCAATGCCATGTTCCA
ACTGTGGAAGCGTCGGTTGTGGACGAAAGCTGACTATTTGCACTCCCATG
CCGTATCGGGCGCGGCCTTCATGGTCCTAGGCGCCCTGTACGTTTTGTTT
TTCGTGGGCGACCAAGTCTTCGGGGGGAGCGCCCTAGCCCAGGCCGAGCG
CGGGGTGGTAGGATGGGTGCCCCTCGCCATCATGTGGACCGGCGTTGTGA
ATTGTATCAGCTGTCTGCCCATGTCCAAGTTCCGCGCGGGACCCCAGGGG
GGCTACGACACCAAGGGCGCCGGTTTCAAAGGGTTGGGAATAGGCATGAC
CATGCTTGGCATATGGACCGCCTACTTCTTCTCCGGGCATTACCCGAGCT
GGATGGCGCCGGTAGACCCGCTTTTGGCTCTGGGCTTTCTGGCGGTGATT
GTGCATGGCATTGTCAATTCTGAGGTGGCCTTGGCCAAGGAACTGGAAGA
GAAGGCTCCCGCCATGTCCCCTGAAGGCGTGTGGAGCTCTACCCCGTCCT
CCCCTGCGTCCTCCCCGGACGCCTCCCTGACAGAGCGGGAGACCCGTACC
GAAATCGTGCTGAACCACCGCGTCGCGTCGTACCCTAACCTCCTCCACCT
CCCAGTCCTCTACAACGTCATCCTCGGAGGCCAGCCCTGGCTCCAGCAGG
TGGTCGCCAAATTCCCACTGGAGCCCACCCTCCTCTTCCACGCCTCGTTC
GGGATCGCGGTGGCGAACAGCATCGTCTTTCTGGGGGCGACTTTGAAGGA
CCGTAAGCTCATGACGTTGCGGCAGTGGTTGTTGCTCCAAGTGGTGGTGA
TGACCCCCTTCGTCACGACCGTCGTGGACGTATGGAGCTTGGGAAGGGAA
GTGAGCATCAACCCCTTGGAGGCGCCGCTCTTCGGGAGGCTTTTAACCGC
ATTGCTTTGGTGGGTAGACATTCATTACAGTAAGACAAGGCACTCTAAGC
AAAGAATATCGGGGATTGGTCGCGGACACACTCGTGTCGGCCGTGCTATG
CCTTAG

protein sequence of rna734

>rna734-protein ID=rna734-protein|Name=rna734|organism=Nannochloropsis gaditana|type=polypeptide|length=234bp
MLSLSVMVLEALALFFTAVTAISTYYFSFRTNLTFPSQQSQITYYSVYQT
CATSTLFGDRVFAAANGMCAAVWFVEAFLIMALVTACFGYVLHIMSDKRA
LLPSGKRAWSVMWQQHLWSALFLILGLGTAGGVFRNLRILLLRNIPVGQS
AQLRFSWGFATHIVATVLHIILTLILVIFRPDEGPIQQGMYTDENYSQPM
TPRSGMHPMTPKSFAGPMTPPAADDAPTDAVAAF

mRNA from alignment at CM002456.1:283215..285782-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna734 ID=rna734|Name=rna734|organism=Nannochloropsis gaditana|type=mRNA|length=2568bp|location=Sequence derived from alignment at CM002456.1:283215..285782- (Nannochloropsis gaditana)
AAAGGACAAGTATTAGTACGGACAAAGGACGCGTTGCGACCGTAAAAAAC
GAGGAAAGATATAGTACCAAGCATAGTAGACGCCTGTCGCTGTCCCTGTG
CATAAAACACCACTCTTTTTCAAAAGCGGGGGGTATAAGGACGGGAAAGC
GATCGGAAAGCGAGTCAAGGGCCATGTGGGGGGGCGACTCCAAGAAAAAG
CAAGTTGAAGTTTTGGGAAACGTCCTTCTCTTCTGGTGTTGACAGGAAAA
AGGCCATGCAAGAAGACGAACAAACGTTGAATTTTGCCACATGCGTGTCG
TATGATTCTATTCGGTATGGTAGGGTGGTGTAGGCTTGCAGGGACACAGA
GTTTATGCAGCCGTGCCTTGGCGTGTGATCCTTGTTTGCCTTCCTGATGA
GTCGTAGCTGGTATAGATTTCTCGCTTACTCCATTGGAAAATACATGCAC
GCCATTGCTATTTGTAAAACCCGTTGGCCGTCTTGTTTGTCTTTATAAGT
CCCTTTTCTGTGTTACCCATTTTTTCTTGTGTCGACCTGTGCATCTTGCG
TGTCGAATCAAAGGACAGGCATGTCATTTTTGGTGCTGGTCCACCTTTGT
GCGAGATCGGACCTCCTACCCAACTGTTCTTGACTCCGATCCCGCCATCA
CTGAGCTTTGCCGATCTGCTCGAAATTAAAGCATCCTTAATACTTACATG
TGGACTTTCATCAGTGAGAGGTGTTTATGCTAAAAATACTACTGACTAGA
CAGCACGCAGTACCCATGCCTTACAAATTGATCGAAACTATCTCACATTA
CATGTCCATGAAATAGCCGTTCCCCTTTCGTAAAGGTCGACGTCCTTTCC
AACAATGCTTTCCTTGTCAGTCATGGTTCTAGAGGCTCTTGCCCTCTTTT
TCACGGCCGTCACCGCGATCTCAACATGTAAGTTCTAAAGCGGACGGGCC
GGCAGCAAGCAGACAGGGTCCCCACAAGGAGCATTCCCGCGCCCAATATG
CCATGGGATCGGGTCATGGGCTCGGGAGAAGCTTACACCGCTTCCTCTTT
GTGCTTTGGACTGGATCATGTACACTAAAGCTCACGTCCCTCCTTCTCTC
TGCTCTTCCCCCTGACCCCCTACGCCTCTTTCCCTCTTTCCCAGACTACT
TCAGCTTCAGGACAAACCTGACGTTTCCCTCTCAGCAGTCTCAAATCACC
TACTACTCGGTATACCAGACGTGCGCCACCAGCACGCTTTTCGGAGACCG
TGTCTTCGCGGCTGCCAATGGGATGTGCGCCGCCGTTTGGTTCGTTGAGG
CGTTTTTGATCATGGCGCTCGTCACTGCCTGCTTTGGCTACGTGCTGCAC
ATCATGTCCGACAAACGGGCCCTGGTAAGCTTGAACCTCCTACTCCAGAA
TGACAAGACGTGAAAAGTTCCTCCCTTGCCAAGAAAGCTCAGGCTGTCGA
AACCACCGCACGTACTCAAAAGCTTTGTATATCCCCTCCCCCCCACAGCT
GCCGTCGGGAAAACGTGCCTGGTCCGTCATGTGGCAACAGCACTTATGGA
GCGCCCTTTTCCTCATTCTGGGCCTGGGGACTGCTGGCGGTGTCTTCCGC
AACCTGCGAATTCTTTTGCTCCGAAACATTCCTGTCGGTCAAAGCGCCCA
GCTCCGTTTCTCCTGGGGCTTTGCGACGCACATCGTCGCGACCGTCCTCC
ACATCATCCTCACCTTGATCCTGGTCATCTTCCGCCCGGACGAGGGCCCC
ATCCAGCAAGGCATGTACACGGACGAGAACTACTCGCAGCCCATGACTCC
ACGGAGCGGGATGCACCCGATGACGCCCAAAAGCTTCGCCGGGCCCATGA
CCCCCCCGGCAGCAGATGATGCACCAACAGATGCAGTCGCAGCATTTTGA
CACGGAAGAGGAGGAATGAGCGTCCCTGACTACGGAGTGATTGTCATGTA
TAGCATGTATAAGAGCGTTCTGGATGCATGAGTCGCGCGGTGCATGAGTC
TTGTGCAGCCACGGCGTCGCGGAGTCGCGGTGCCAACGGGGAGTTTTCGA
CCTTCGAGTGTATGAGGGAGTATCGACACGATAAAGAGGAAGCGAGGGAT
GCGGCCCTGTCGAGCATCATAAGGAGAAGGGGGGGTGGGGGCGTGTGCAT
GCCAAAGCGGAGAAAGAATCATTCGGTATCTTGCTTCGAGAAAACCATGC
GAAAGGGAACGTTTATTTGGGAGAGTCTTCCCGACGGCGTGCATTACAGA
CGTCCTCTCGCATAACCAAGCCAGGACGTGTCCTTGCCTAGACCACGCGT
GTGCTTGCGTTGTTGTATCACCTCCTGAATGGGGCCAGTGCCAGGGGAAG
ACGAGAAGGATTGTAGCCAAAGGAAAAACGGGCCTGGGCCCCCTAAGGCA
TAGCACGGCCGACACGAGTGTGTCCGCGACCAATCCCCGATATTCTTTGC
TTAGAGTGCCTTGTCTTACTGTAATGAATGTCTACCCACCAAAGCAATGC
GGTTAAAAGCCTCCCGAAGAGCGGCGCCTTGCCTCTGTACATGCACCAGT
CATTCGACCCCCCTTCCC

Coding sequence (CDS) from alignment at CM002456.1:283215..285782-

>rna734 ID=rna734|Name=rna734|organism=Nannochloropsis gaditana|type=CDS|length=2115bp|location=Sequence derived from alignment at CM002456.1:283215..285782- (Nannochloropsis gaditana)
CTGCCGTCGGGAAAACGTGCCTGGTCCGTCATGTGGCAACAGCACTTATG
GAGCGCCCTTTTCCTCATTCTGGGCCTGGGGACTGCTGGCGGTGTCTTCC
GCAACCTGCGAATTCTTTTGCTCCGAAACATTCCTGTCGGTCAAAGCGCC
CAGCTCCGTTTCTCCTGGGGCTTTGCGACGCACATCGTCGCGACCGTCCT
CCACATCATCCTCACCTTGATCCTGGTCATCTTCCGCCCGGACGAGGGCC
CCATCCAGCAAGGCATGTACACGGACGAGAACTACTCGCAGCCCATGACT
CCACGGAGCGGGATGCACCCGATGACGCCCAAAAGCTTCGCCGGGCCCAT
GACCCCCCCGGCAGCAGATGATGCACCAACAGATGCAGTCGCAGCATTTT
GAACTACTTCAGCTTCAGGACAAACCTGACGTTTCCCTCTCAGCAGTCTC
AAATCACCTACTACTCGGTATACCAGACGTGCGCCACCAGCACGCTTTTC
GGAGACCGTGTCTTCGCGGCTGCCAATGGGATGTGCGCCGCCGTTTGGTT
CGTTGAGGCGTTTTTGATCATGGCGCTCGTCACTGCCTGCTTTGGCTACG
TGCTGCACATCATGTCCGACAAACGGGCCCTGATGCTTTCCTTGTCAGTC
ATGGTTCTAGAGGCTCTTGCCCTCTTTTTCACGGCCGTCACCGCGATCTC
AACATCTGCCGTCGGGAAAACGTGCCTGGTCCGTCATGTGGCAACAGCAC
TTATGGAGCGCCCTTTTCCTCATTCTGGGCCTGGGGACTGCTGGCGGTGT
CTTCCGCAACCTGCGAATTCTTTTGCTCCGAAACATTCCTGTCGGTCAAA
GCGCCCAGCTCCGTTTCTCCTGGGGCTTTGCGACGCACATCGTCGCGACC
GTCCTCCACATCATCCTCACCTTGATCCTGGTCATCTTCCGCCCGGACGA
GGGCCCCATCCAGCAAGGCATGTACACGGACGAGAACTACTCGCAGCCCA
TGACTCCACGGAGCGGGATGCACCCGATGACGCCCAAAAGCTTCGCCGGG
CCCATGACCCCCCCGGCAGCAGATGATGCACCAACAGATGCAGTCGCAGC
ATTTTGAACTACTTCAGCTTCAGGACAAACCTGACGTTTCCCTCTCAGCA
GTCTCAAATCACCTACTACTCGGTATACCAGACGTGCGCCACCAGCACGC
TTTTCGGAGACCGTGTCTTCGCGGCTGCCAATGGGATGTGCGCCGCCGTT
TGGTTCGTTGAGGCGTTTTTGATCATGGCGCTCGTCACTGCCTGCTTTGG
CTACGTGCTGCACATCATGTCCGACAAACGGGCCCTGATGCTTTCCTTGT
CAGTCATGGTTCTAGAGGCTCTTGCCCTCTTTTTCACGGCCGTCACCGCG
ATCTCAACATCTGCCGTCGGGAAAACGTGCCTGGTCCGTCATGTGGCAAC
AGCACTTATGGAGCGCCCTTTTCCTCATTCTGGGCCTGGGGACTGCTGGC
GGTGTCTTCCGCAACCTGCGAATTCTTTTGCTCCGAAACATTCCTGTCGG
TCAAAGCGCCCAGCTCCGTTTCTCCTGGGGCTTTGCGACGCACATCGTCG
CGACCGTCCTCCACATCATCCTCACCTTGATCCTGGTCATCTTCCGCCCG
GACGAGGGCCCCATCCAGCAAGGCATGTACACGGACGAGAACTACTCGCA
GCCCATGACTCCACGGAGCGGGATGCACCCGATGACGCCCAAAAGCTTCG
CCGGGCCCATGACCCCCCCGGCAGCAGATGATGCACCAACAGATGCAGTC
GCAGCATTTTGAACTACTTCAGCTTCAGGACAAACCTGACGTTTCCCTCT
CAGCAGTCTCAAATCACCTACTACTCGGTATACCAGACGTGCGCCACCAG
CACGCTTTTCGGAGACCGTGTCTTCGCGGCTGCCAATGGGATGTGCGCCG
CCGTTTGGTTCGTTGAGGCGTTTTTGATCATGGCGCTCGTCACTGCCTGC
TTTGGCTACGTGCTGCACATCATGTCCGACAAACGGGCCCTGATGCTTTC
CTTGTCAGTCATGGTTCTAGAGGCTCTTGCCCTCTTTTTCACGGCCGTCA
CCGCGATCTCAACAT

Synonyms

Publications