EWM29960.1, cds715 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29960.1 vs. NCBI_GenBank
Match: gi|585112555|gb|EWM29960.1| (ccch zinc finger and smr domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 1318.91 bits (3412), Expect = 0.000e+0 Identity = 659/659 (100.00%), Postives = 659/659 (100.00%), Query Frame = 0 Query: 1 MKIGSLALRLNARVGSEPGLLARPLYAIPGHRHAHSRIHNHSSALVTEADRGAVISRLVSAFGSMNGIQLTPFQLWLHDSLRTMGLDDGTFAPYIQALLMEASEGGVYENGGVEMTLASLCPPEQEPQWKSFCQDLLLYSAQPHLLSASAGHSPPSVASSPANTLSPSPESRVPSSVSATTLNTFSPVSSTSLTASPSLLSSSSRPFLPKRQQSQEHGQQPSSLVGSVTHDHAPGREEDDPFSLDTLSARVASSCLGEDEEEQEAVGPPTQFPDARLGPPDPLYPQPAEASRHMHVAPMGEHGRGHLGSLQASPSFHPYYSPMATPYLPGGPSNPLPPPELPSLQQLQDRSDLAPFQPTQLPEPHRQGSYPHHLHRHGSSEPAGGGGSARGVDDAYGLPDFGFLDEVDEGGAEEEGGREDLWEAQALEMAAVEEDESYIWEMGVNTLLGSFPHCAPEALLTALLRCDLDLEEAVARVEEALKPGVAPCRYYLAGFCARSDCAFSHAIATTTCVHWLLGSCRDGMLDEETQRPHTCPFRHDLPPKGGGPHDPAEDSSAGSSSSSSSTSSSSSSSSGPPFSATDESHFPALSSSSATTSAAASPSTPGSNTPGKSFLQVALTSKRTSLPRRRPTASSRAASVPAPASARRANAATAQRKGG 659 MKIGSLALRLNARVGSEPGLLARPLYAIPGHRHAHSRIHNHSSALVTEADRGAVISRLVSAFGSMNGIQLTPFQLWLHDSLRTMGLDDGTFAPYIQALLMEASEGGVYENGGVEMTLASLCPPEQEPQWKSFCQDLLLYSAQPHLLSASAGHSPPSVASSPANTLSPSPESRVPSSVSATTLNTFSPVSSTSLTASPSLLSSSSRPFLPKRQQSQEHGQQPSSLVGSVTHDHAPGREEDDPFSLDTLSARVASSCLGEDEEEQEAVGPPTQFPDARLGPPDPLYPQPAEASRHMHVAPMGEHGRGHLGSLQASPSFHPYYSPMATPYLPGGPSNPLPPPELPSLQQLQDRSDLAPFQPTQLPEPHRQGSYPHHLHRHGSSEPAGGGGSARGVDDAYGLPDFGFLDEVDEGGAEEEGGREDLWEAQALEMAAVEEDESYIWEMGVNTLLGSFPHCAPEALLTALLRCDLDLEEAVARVEEALKPGVAPCRYYLAGFCARSDCAFSHAIATTTCVHWLLGSCRDGMLDEETQRPHTCPFRHDLPPKGGGPHDPAEDSSAGSSSSSSSTSSSSSSSSGPPFSATDESHFPALSSSSATTSAAASPSTPGSNTPGKSFLQVALTSKRTSLPRRRPTASSRAASVPAPASARRANAATAQRKGG Sbjct: 1 MKIGSLALRLNARVGSEPGLLARPLYAIPGHRHAHSRIHNHSSALVTEADRGAVISRLVSAFGSMNGIQLTPFQLWLHDSLRTMGLDDGTFAPYIQALLMEASEGGVYENGGVEMTLASLCPPEQEPQWKSFCQDLLLYSAQPHLLSASAGHSPPSVASSPANTLSPSPESRVPSSVSATTLNTFSPVSSTSLTASPSLLSSSSRPFLPKRQQSQEHGQQPSSLVGSVTHDHAPGREEDDPFSLDTLSARVASSCLGEDEEEQEAVGPPTQFPDARLGPPDPLYPQPAEASRHMHVAPMGEHGRGHLGSLQASPSFHPYYSPMATPYLPGGPSNPLPPPELPSLQQLQDRSDLAPFQPTQLPEPHRQGSYPHHLHRHGSSEPAGGGGSARGVDDAYGLPDFGFLDEVDEGGAEEEGGREDLWEAQALEMAAVEEDESYIWEMGVNTLLGSFPHCAPEALLTALLRCDLDLEEAVARVEEALKPGVAPCRYYLAGFCARSDCAFSHAIATTTCVHWLLGSCRDGMLDEETQRPHTCPFRHDLPPKGGGPHDPAEDSSAGSSSSSSSTSSSSSSSSGPPFSATDESHFPALSSSSATTSAAASPSTPGSNTPGKSFLQVALTSKRTSLPRRRPTASSRAASVPAPASARRANAATAQRKGG 659
BLAST of EWM29960.1 vs. NCBI_GenBank
Match: gi|553180149|ref|XP_005853353.1| (hypothetical protein NGA_0684800 [Nannochloropsis gaditana CCMP526] >gi|422295707|gb|EKU23006.1| hypothetical protein NGA_0684800 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 534.258 bits (1375), Expect = 0.000e+0 Identity = 267/269 (99.26%), Postives = 267/269 (99.26%), Query Frame = 0 Query: 65 MNGIQLTPFQLWLHDSLRTMGLDDGTFAPYIQALLMEASEGGVYENGGVEMTLASLCPPEQEPQWKSFCQDLLLYSAQPHLLSASAGHSPPSVASSPANTLSPSPESRVPSSVSATTLNTFSPVSSTSLTASPSLLSSSSRPFLPKRQQSQEHGQQPSSLVGSVTHDHAPGREEDDPFSLDTLSARVASSCLGEDEEEQEAVGPPTQFPDARLGPPDPLYPQPAEASRHMHVAPMGEHGRGHLGSLQASPSFHPYYSPMATPYLPGGPS 333 MNGIQLTPFQLWLHDSLRTMGLDDGTFAPYIQALLMEASEGGVYENGGVEMTLASLCPPEQEPQWKSFCQ LLLYSAQPHLLSASAGHSPPSVASSPANTLSPSPESRVPSSVSATTLNTFSPVSSTSLTASPSLLSSSSRPFLPKRQQSQEHGQQPSSLVGSVTHDHAPGREEDDPFSLDTLSARVASSCLGEDEEEQE VGPPTQFPDARLGPPDPLYPQPAEASRHMHVAPMGEHGRGHLGSLQASPSFHPYYSPMATPYLPGGPS Sbjct: 1 MNGIQLTPFQLWLHDSLRTMGLDDGTFAPYIQALLMEASEGGVYENGGVEMTLASLCPPEQEPQWKSFCQGLLLYSAQPHLLSASAGHSPPSVASSPANTLSPSPESRVPSSVSATTLNTFSPVSSTSLTASPSLLSSSSRPFLPKRQQSQEHGQQPSSLVGSVTHDHAPGREEDDPFSLDTLSARVASSCLGEDEEEQETVGPPTQFPDARLGPPDPLYPQPAEASRHMHVAPMGEHGRGHLGSLQASPSFHPYYSPMATPYLPGGPS 269
BLAST of EWM29960.1 vs. NCBI_GenBank
Match: gi|695413549|ref|XP_009526064.1| (hypothetical protein PHYSODRAFT_314545 [Phytophthora sojae] >gi|348677189|gb|EGZ17006.1| hypothetical protein PHYSODRAFT_314545 [Phytophthora sojae]) HSP 1 Score: 77.7962 bits (190), Expect = 2.716e-11 Identity = 59/190 (31.05%), Postives = 87/190 (45.79%), Query Frame = 0 Query: 430 AAVEEDESYIWEMG---VNTLLGSFPHCAPEALLTALLRCDLDLEEAVARVE-----EALKPGVAPCRYYLAGFCARSDCAFSHAIATTTCVHWLLGSCRDGMLDEETQRPHTCPFRHDLPPKGGGPHDPAEDSSAGSSSSSSSTSSSSSSSSGPPFSATDESHFPALSSSSATTSAAASPSTP-GSNTP 610 AA++ ++S+ W + V+ L FP P L L LD+++A A ++ E++ PG CR+YL G C R+DC F H TC WL G+C Q H C F HD + +D++ G S +G P E FP+L S+++ +A ASP P GS+ P Sbjct: 187 AALQNEDSFFWSVAYELVSHLQLKFPDIDPSRLCDLLRLVGLDVDKAHAVLKATIERESIGPGQV-CRHYLQGECRRADCMFLHDTDKITCRFWLRGTC--------LQAEH-CVFAHDF-----CEYYSMDDNALGQRDYD---SEDEMEQNGAPLDIQAEDMFPSLQSATSGATAPASPPLPQGSDGP 358
BLAST of EWM29960.1 vs. NCBI_GenBank
Match: gi|298707600|emb|CBJ30179.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 74.3294 bits (181), Expect = 3.703e-10 Identity = 47/133 (35.34%), Postives = 65/133 (48.87%), Query Frame = 0 Query: 421 LWEAQALEMAAVEEDESYIWEMGVN-----TLLGSFPHCAPEALLTALLRCDLDLEEAVARVEEALKPG------VAPCRYYLA-GFCARSDCAFSHAIATTTCVHWLLGSCRDGMLDEETQRPHTCPFRHDL 541 L++ + E ++ ++Y E+ + L F C+PE+L AL + D +L+ A A V AL+ V PCR+ L G C RSDC FSH ATT C +WL G C + D C F HDL Sbjct: 116 LYDGKGQEEGTGQDQDAYYAEVQLEAEVLEVLAEGFSDCSPESLQVALAKSDWNLDRASAAVLLALQIACDASLAVKPCRHLLLDGECRRSDCTFSHDFATTPCRYWLQGCCVNSSDD--------CYFMHDL 240
BLAST of EWM29960.1 vs. NCBI_GenBank
Match: gi|567945341|gb|ETK71152.1| (hypothetical protein L915_21532 [Phytophthora parasitica] >gi|570935291|gb|ETP00548.1| hypothetical protein F441_22033 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 73.559 bits (179), Expect = 5.821e-10 Identity = 55/189 (29.10%), Postives = 87/189 (46.03%), Query Frame = 0 Query: 430 AAVEEDESYIWEMG---VNTLLGSFPHCAPEALLTALLRCDLDLEEAVARVE-----EALKPGVAPCRYYLAGFCARSDCAFSHAIATTTCVHWLLGSCRDGMLDEETQRPHTCPFRHDLPPKGGGPHDPAEDSSAGSSSSSSSTSSSSSSSSGPPFSATDESHFPALSSSSATTSAAASPSTPGSNTP 610 AA+++++S+ W + V+ L F P L L LD+++A A ++ E++ PG CR+YL G C R+DC F H + TC WL G+C Q H C F HD + + ++ G S +S+ P E FP+L S+++ T++ P GSN+P Sbjct: 177 AAMQDEDSFFWSVAYELVSHLQLKFQDIDPNRLCDLLRLVGLDVDKAHAVLKATIERESIGPGQV-CRHYLQGECRRADCMFLHDTDSITCRFWLRGTC--------LQADH-CVFAHDF-----CEYYSMDVNALGQRDYDSEDEMDQNSA---PLDIQAEDMFPSLQSATSGTTSPQLPLPQGSNSP 347
BLAST of EWM29960.1 vs. NCBI_GenBank
Match: gi|567945342|gb|ETK71153.1| (hypothetical protein, variant 1 [Phytophthora parasitica] >gi|567945343|gb|ETK71154.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|570935292|gb|ETP00549.1| hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >gi|570935293|gb|ETP00550.1| hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 73.1738 bits (178), Expect = 6.589e-10 Identity = 55/189 (29.10%), Postives = 87/189 (46.03%), Query Frame = 0 Query: 430 AAVEEDESYIWEMG---VNTLLGSFPHCAPEALLTALLRCDLDLEEAVARVE-----EALKPGVAPCRYYLAGFCARSDCAFSHAIATTTCVHWLLGSCRDGMLDEETQRPHTCPFRHDLPPKGGGPHDPAEDSSAGSSSSSSSTSSSSSSSSGPPFSATDESHFPALSSSSATTSAAASPSTPGSNTP 610 AA+++++S+ W + V+ L F P L L LD+++A A ++ E++ PG CR+YL G C R+DC F H + TC WL G+C Q H C F HD + + ++ G S +S+ P E FP+L S+++ T++ P GSN+P Sbjct: 94 AAMQDEDSFFWSVAYELVSHLQLKFQDIDPNRLCDLLRLVGLDVDKAHAVLKATIERESIGPGQV-CRHYLQGECRRADCMFLHDTDSITCRFWLRGTC--------LQADH-CVFAHDF-----CEYYSMDVNALGQRDYDSEDEMDQNSA---PLDIQAEDMFPSLQSATSGTTSPQLPLPQGSNSP 264
BLAST of EWM29960.1 vs. NCBI_GenBank
Match: gi|566023150|gb|ETI46061.1| (hypothetical protein F443_09528 [Phytophthora parasitica P1569] >gi|567973951|gb|ETL24599.1| hypothetical protein L916_21396 [Phytophthora parasitica] >gi|568018400|gb|ETL92574.1| hypothetical protein L917_09161 [Phytophthora parasitica] >gi|568048836|gb|ETM45864.1| hypothetical protein L914_09187 [Phytophthora parasitica] >gi|570326797|gb|ETO74745.1| hypothetical protein F444_09597 [Phytophthora parasitica P1976] >gi|570984287|gb|ETP43932.1| hypothetical protein F442_09437 [Phytophthora parasitica P10297]) HSP 1 Score: 73.1738 bits (178), Expect = 6.632e-10 Identity = 55/189 (29.10%), Postives = 87/189 (46.03%), Query Frame = 0 Query: 430 AAVEEDESYIWEMG---VNTLLGSFPHCAPEALLTALLRCDLDLEEAVARVE-----EALKPGVAPCRYYLAGFCARSDCAFSHAIATTTCVHWLLGSCRDGMLDEETQRPHTCPFRHDLPPKGGGPHDPAEDSSAGSSSSSSSTSSSSSSSSGPPFSATDESHFPALSSSSATTSAAASPSTPGSNTP 610 AA+++++S+ W + V+ L F P L L LD+++A A ++ E++ PG CR+YL G C R+DC F H + TC WL G+C Q H C F HD + + ++ G S +S+ P E FP+L S+++ T++ P GSN+P Sbjct: 177 AAMQDEDSFFWSVAYELVSHLQLKFQDIDPNRLCDLLRLVGLDVDKAHAVLKATIERESIGPGQV-CRHYLQGECRRADCMFLHDTDSITCRFWLRGTC--------LQADH-CVFAHDF-----CEYYSMDVNALGQRDYDSEDEMDQNSA---PLDIQAEDMFPSLQSATSGTTSPQPPLPQGSNSP 347
BLAST of EWM29960.1 vs. NCBI_GenBank
Match: gi|675195093|ref|XP_008906431.1| (hypothetical protein PPTG_12004 [Phytophthora parasitica INRA-310] >gi|566023151|gb|ETI46062.1| hypothetical protein, variant 1 [Phytophthora parasitica P1569] >gi|566023152|gb|ETI46063.1| hypothetical protein, variant 2 [Phytophthora parasitica P1569] >gi|567973952|gb|ETL24600.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|567973953|gb|ETL24601.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568018401|gb|ETL92575.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568018402|gb|ETL92576.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568048837|gb|ETM45865.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568048838|gb|ETM45866.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568093347|gb|ETN08143.1| hypothetical protein PPTG_12004 [Phytophthora parasitica INRA-310] >gi|570326798|gb|ETO74746.1| hypothetical protein, variant 1 [Phytophthora parasitica P1976] >gi|570326799|gb|ETO74747.1| hypothetical protein, variant 2 [Phytophthora parasitica P1976] >gi|570984288|gb|ETP43933.1| hypothetical protein, variant 1 [Phytophthora parasitica P10297] >gi|570984289|gb|ETP43934.1| hypothetical protein, variant 2 [Phytophthora parasitica P10297]) HSP 1 Score: 72.7886 bits (177), Expect = 8.421e-10 Identity = 55/189 (29.10%), Postives = 87/189 (46.03%), Query Frame = 0 Query: 430 AAVEEDESYIWEMG---VNTLLGSFPHCAPEALLTALLRCDLDLEEAVARVE-----EALKPGVAPCRYYLAGFCARSDCAFSHAIATTTCVHWLLGSCRDGMLDEETQRPHTCPFRHDLPPKGGGPHDPAEDSSAGSSSSSSSTSSSSSSSSGPPFSATDESHFPALSSSSATTSAAASPSTPGSNTP 610 AA+++++S+ W + V+ L F P L L LD+++A A ++ E++ PG CR+YL G C R+DC F H + TC WL G+C Q H C F HD + + ++ G S +S+ P E FP+L S+++ T++ P GSN+P Sbjct: 94 AAMQDEDSFFWSVAYELVSHLQLKFQDIDPNRLCDLLRLVGLDVDKAHAVLKATIERESIGPGQV-CRHYLQGECRRADCMFLHDTDSITCRFWLRGTC--------LQADH-CVFAHDF-----CEYYSMDVNALGQRDYDSEDEMDQNSA---PLDIQAEDMFPSLQSATSGTTSPQPPLPQGSNSP 264
BLAST of EWM29960.1 vs. NCBI_GenBank
Match: gi|567945344|gb|ETK71155.1| (hypothetical protein, variant 3 [Phytophthora parasitica] >gi|570935294|gb|ETP00551.1| hypothetical protein, variant 3 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 72.0182 bits (175), Expect = 1.217e-9 Identity = 55/192 (28.65%), Postives = 88/192 (45.83%), Query Frame = 0 Query: 430 AAVEEDESYIWEMG---VNTLLGSFPHCAPEALLTALLRCDLDLEEAVARVE-----EALKPGVAPCRYYLAGFCARSDCAFSHAIATTTCVHWLLGSCRDGMLDEETQRPHTCPFRHDLPPKGGGPHDPAEDSSAGSSSSSSSTSSSSSSSSGPPFSATDESHFPALSSSSATTSAAASPSTPGSNTPGKS 613 AA+++++S+ W + V+ L F P L L LD+++A A ++ E++ PG CR+YL G C R+DC F H + TC WL G+C Q H C F HD + + ++ G S +S+ P E FP+L S+++ T++ P GSN+P + Sbjct: 177 AAMQDEDSFFWSVAYELVSHLQLKFQDIDPNRLCDLLRLVGLDVDKAHAVLKATIERESIGPGQV-CRHYLQGECRRADCMFLHDTDSITCRFWLRGTC--------LQADH-CVFAHDF-----CEYYSMDVNALGQRDYDSEDEMDQNSA---PLDIQAEDMFPSLQSATSGTTSPQLPLPQGSNSPSMT 350
BLAST of EWM29960.1 vs. NCBI_GenBank
Match: gi|566023153|gb|ETI46064.1| (hypothetical protein, variant 3 [Phytophthora parasitica P1569] >gi|567973954|gb|ETL24602.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|568018403|gb|ETL92577.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|568048839|gb|ETM45867.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|570326800|gb|ETO74748.1| hypothetical protein, variant 3 [Phytophthora parasitica P1976] >gi|570984290|gb|ETP43935.1| hypothetical protein, variant 3 [Phytophthora parasitica P10297]) HSP 1 Score: 72.0182 bits (175), Expect = 1.364e-9 Identity = 55/192 (28.65%), Postives = 88/192 (45.83%), Query Frame = 0 Query: 430 AAVEEDESYIWEMG---VNTLLGSFPHCAPEALLTALLRCDLDLEEAVARVE-----EALKPGVAPCRYYLAGFCARSDCAFSHAIATTTCVHWLLGSCRDGMLDEETQRPHTCPFRHDLPPKGGGPHDPAEDSSAGSSSSSSSTSSSSSSSSGPPFSATDESHFPALSSSSATTSAAASPSTPGSNTPGKS 613 AA+++++S+ W + V+ L F P L L LD+++A A ++ E++ PG CR+YL G C R+DC F H + TC WL G+C Q H C F HD + + ++ G S +S+ P E FP+L S+++ T++ P GSN+P + Sbjct: 177 AAMQDEDSFFWSVAYELVSHLQLKFQDIDPNRLCDLLRLVGLDVDKAHAVLKATIERESIGPGQV-CRHYLQGECRRADCMFLHDTDSITCRFWLRGTC--------LQADH-CVFAHDF-----CEYYSMDVNALGQRDYDSEDEMDQNSA---PLDIQAEDMFPSLQSATSGTTSPQPPLPQGSNSPSMT 350 The following BLAST results are available for this feature:
BLAST of EWM29960.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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