rna709, rna709 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna709
Unique Name	rna709
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1236
Alignment location	CM002456.1:229775..232318 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100200g1.10013.mrna
Orig protein id	gnl\|cribi\|Naga_100200g1.10013
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:229775..232318 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100200g1	gene680	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29964.1	cds709	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna709	rna709-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:229775..232318-
coding sequence from alignment at CM002456.1:229775..232318-

mRNA sequence

>rna709 ID=rna709|Name=rna709|organism=Nannochloropsis gaditana|type=mRNA|length=1236bp
ATGGAGGGGGTGGAAGGGGGCGGAGGGGAGGACGGGAGGGGAAGCGATCC
TGAGTGGCAGTGGTACATTGTCAACGATTTCCTGGTCGAACCCACGATTT
TGGAGGACGCGCTGGGTTTCCTACCCGCCTGGAAGGAACCTTGTATCCTC
CTCTATCGGGACCGAACAAGCACGGCCGCCGCCCACGCGGCCTGGCTCGA
GCAGCTCCGGGCCGCCGGCGCGAGGGTGGCTGGGGGTGGAAAGCGGGAAG
TTGGCGAGGAAAAAGGAGAGAACGACAGCTCCGCAGATGCCTCTGGCGCC
GGTGGGCTTGCCGTCGGCACCCTTCCTCCCTCCATCCCCGTCTCCATCTT
CGCCTCCCCGTCCCGCTCCACCGCCACCCCCTTACCCCCAACGTTCACGC
CCTTGACCCCGGAAGCATTGCCTGGACGGGGCGATTTGGTGGGCATCGAC
GCCGAATTTGTGCAGTTGGAAATGGAGACCGCGTCCGTGTTGGAAACGGG
GGCGAGGGTTGTATTCAAAGAGGGTCGGCAGGCCTTGGCGCGCCTGTCCC
TTCTGGACGTTCGCAGCGATCAGGTTATGGTGGACGACTATGTCCTTCCG
TCAGAACCAGTCATGGATTATCTGACGCGGTTTTCGGGCATCGTGCCGGA
GGATTTGGACCCTTCCCTCTCCCGCCACCACTTGGTGACCGCCCGCACGG
CCTACTTGAAGCTTCGGTGCCTGATTGATCGGGGCGTGATATTGGTTGGT
CATGGGCTTAAAAAAGATTTTCGGATCATCAATGTGTATGTGCCGCCGGC
GCAAGTGATCGACACGGTGGATTTGTGGTGCTTGGAAGGGCAGCGGAAGA
TCTCTCTGCGCTTTCTTGCGGCCTATCTGTTGGGGGAGAGCATCCAGGGG
GAAACGCACGATTCGATCGAGGACGCACGGACAGCGGTGCGACTCTACCA
GAAATGGGAAGAGGCAAAGAAAGAAGGGAAACTGGCGCAGGTCTTGAACG
GGGTCTACGAATACGGACGAACGACGGGATGGAAACTTCAACAGCAAGGG
TTTCCGAAAGAGAAGAAATGCGAGAGCAAAATAGCCAGCCTTTGTGTTGT
ACACACTCCAATGCAAGTAGAGAAACGTGCACATTTAGAGTGTGAAAGGA
AGGATGATGTAGATATGGGTAGGGTTTTGATGAATGCAGTGGTCCGATAT
GTCGTAAATAAAGCACAGAGGGGTGTGCTGCGATGA

protein sequence of rna709

>rna709-protein ID=rna709-protein|Name=rna709|organism=Nannochloropsis gaditana|type=polypeptide|length=722bp
MVGPREGGEVRQERGKKEERGDAREGIVKEQVESEEEGGGEEEGGSEEEG
GSEGEGSSLPSSRGGECYSGAAGGKKRRPGKESPGRGERGRRGGCERRRG
ARQRANSFAAYLDGRHRKEWEDRHGLPGPGEGGHGARHGGGRGDPMSVLP
AAHLPLPVRRVMWTESTSFCRDKHMFDPHYARFLWELLQVAQPGSSSLPP
SLPPALPPSAGLRAYAAGLQYVWNVLIHARALSSLPSWLATLRSILHGEG
NGGREGGREGGREALSGQCGLWTLLYFADDPDGRTAGLDCLLLCPYPSTR
LALVSLIVEAIPQVDKTGLLAVREGSGEGGSEDGLAHPLARLMGLYLVVV
TEAAGVDGRDFFASRWEGISIPGGAPVGPSSWLTGDAGAQGEGGREGGME
MEATPSITPEVLLLLVEAAGQGPDLRALLRTLGGIARVAALVVSLNGGDN
AHLFTRPNLLVRGQGILSLSLRLLGMLVAEALPEDLQRPSHLRVLSSRRF
VELAATLHPDLTSVILAKLTTVPSLPSSFPSSLSPRPSSDCQRVRVAIAD
VVGVLVDRTIEAAALQPQASSLPPPSRSSVSLLSYPQSLVVPGARPLLRV
LEAVLGPRQGRGREGGRENAEVEQWRLELSMPLIHQCSAVLRRVAEGRRG
GGRGIGRGAGGGASHELSEGEMDLIWQVTRLYFALAARSPVATAFMAAKV
GATMTEWRKIIKGMTPRATKRR

mRNA from alignment at CM002456.1:229775..232318-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna709 ID=rna709|Name=rna709|organism=Nannochloropsis gaditana|type=mRNA|length=2544bp|location=Sequence derived from alignment at CM002456.1:229775..232318- (Nannochloropsis gaditana)
ATGGTGGGGCCGAGGGAGGGGGGGGAGGTCAGGCAGGAGAGGGGGAAGAA
GGAGGAAAGGGGGGACGCAAGGGAAGGAATCGTCAAGGAGCAGGTGGAAA
GCGAAGAGGAGGGAGGAGGCGAGGAGGAGGGAGGGAGCGAGGAGGAGGGA
GGGAGCGAAGGAGAGGGTTCCTCACTGCCTTCGTCGCGGGGGGGGGAATG
CTACAGCGGGGCAGCCGGTGGCAAGAAGCGGCGGCCGGGGAAAGAGAGCC
CTGGTAGGGGAGAAAGGGGGCGCCGCGGTGGGTGCGAACGACGGAGAGGG
GCGCGTCAACGGGCGAACAGCTTCGCGGCCTACCTGGACGGTCGTCATCG
CAAAGAGTGGGAGGATCGGCACGGTCTCCCAGGTCCGGGGGAGGGCGGGC
ACGGGGCCAGGCATGGGGGAGGGCGAGGGGACCCCATGTCTGTCTTGCCC
GCAGCGCACCTGCCGCTGCCCGTGCGCCGGGTCATGTGGACGGAGAGCAC
GAGCTTTTGCCGCGACAAGCACATGTTCGACCCTCATTACGCCCGTTTCT
TGTGGGAACTCCTGCAAGTGGCCCAGCCTGGCTCGTCCTCCCTCCCGCCC
TCCCTACCCCCCGCCCTCCCGCCCTCCGCGGGCCTTCGCGCCTATGCGGC
AGGCCTTCAATACGTCTGGAATGTCTTAATCCATGCCCGAGCCCTGTCCT
CCCTCCCTTCCTGGCTCGCCACCCTCCGTTCCATCCTCCACGGCGAGGGC
AACGGCGGGAGGGAGGGCGGGAGGGAGGGCGGGAGGGAGGCTTTGTCGGG
ACAATGCGGACTCTGGACACTTTTGTATTTCGCGGACGACCCCGACGGAC
GCACCGCCGGCTTAGACTGCCTCTTGCTATGCCCCTATCCCTCCACGCGC
CTCGCCCTTGTCAGTCTCATTGTCGAGGCGATCCCCCAAGTGGACAAGAC
CGGTCTGTTGGCGGTGAGGGAGGGCTCGGGGGAGGGCGGGAGCGAGGACG
GGCTCGCGCATCCTCTGGCACGACTCATGGGCTTGTACTTGGTGGTGGTG
ACCGAGGCGGCTGGGGTGGACGGTCGTGACTTCTTCGCGTCTCGGTGGGA
GGGAATAAGCATACCCGGAGGGGCGCCGGTTGGGCCCAGCTCCTGGCTCA
CGGGCGATGCCGGGGCGCAGGGGGAAGGAGGGAGGGAGGGAGGGATGGAG
ATGGAGGCCACGCCCTCGATCACGCCCGAAGTCCTCTTGCTCCTGGTGGA
AGCAGCCGGGCAGGGACCAGACTTGCGCGCATTGCTCCGCACTCTGGGTG
GCATCGCCCGTGTGGCCGCCCTGGTTGTATCCTTGAATGGCGGGGACAAT
GCGCATTTGTTCACCCGTCCCAACCTCTTGGTCCGGGGCCAAGGCATCCT
TTCGCTCTCGCTGCGGTTGCTGGGAATGCTGGTCGCTGAGGCCTTGCCAG
AGGATTTGCAGAGACCCTCCCACCTCCGGGTACTCTCCTCCCGACGTTTT
GTGGAGTTGGCAGCTACCCTCCATCCTGACCTCACCTCCGTGATCCTCGC
CAAACTGACCACCGTGCCCTCCCTCCCCTCCTCTTTCCCTTCTTCCCTCT
CCCCCCGCCCGTCCTCGGATTGCCAGAGGGTCCGTGTCGCCATCGCCGAC
GTCGTTGGCGTGCTCGTGGACAGGACCATTGAAGCTGCGGCGCTTCAGCC
CCAGGCATCTTCCCTCCCTCCCCCATCCCGCAGTTCCGTTTCCCTCCTCA
GCTACCCACAGAGCCTCGTTGTCCCCGGTGCCCGACCTCTTTTGCGTGTT
TTGGAGGCAGTGCTGGGTCCGAGGCAGGGGCGGGGAAGGGAGGGAGGGCG
GGAAAACGCAGAGGTGGAGCAATGGCGGCTAGAGCTCTCCATGCCTTTGA
TCCATCAGTGCAGTGCGGTGTTGAGGCGAGTTGCCGAAGGAAGGCGAGGG
GGAGGACGAGGGATAGGGAGGGGAGCAGGGGGAGGGGCCTCCCATGAATT
GTCAGAGGGAGAAATGGACTTGATATGGCAAGTCACTCGGCTCTACTTTG
CACTGGCAGCACGCTCTCCCGTGGCCACTGCCTTCATGGCCGCTAAAGTG
GGTGCGACGATGACGGAATGGAGGAAGATCATCAAAGGGATGACGCCAAG
GGCGACCAAAAGGCGGTAAGCCAGCGTGTCACCCCTCAGCAAACCTTCGC
ACCGGAGATCATCGCGGGACGATGGCTATCCGAAGGACAGCGCATCTCTG
GCAGCAGAACACGGACAGGTGGGCGGTTACGGAGTGGTCGATTTCGAAAA
TTGAGGAATAGGAAGCGCCGCAATTCACACTGACGACTGGATGTTGAATC
AAAGTAATTTTCCCCACAACGCCTGAAGGCCGACACCTCGGCGCAAAGTC
GGTTGCGAATAATTTAATGGAAGGACACTGTACAATGTCTTGGGGAGATT
TGCATGCGACGGGTCTTTACCATGTTGCGTGTCAATCCATAAAAGGCCAA
TGCCGACACGAAATAAAATCAGCTAACTTGGCAGTCACTTAATC

Coding sequence (CDS) from alignment at CM002456.1:229775..232318-

>rna709 ID=rna709|Name=rna709|organism=Nannochloropsis gaditana|type=CDS|length=2169bp|location=Sequence derived from alignment at CM002456.1:229775..232318- (Nannochloropsis gaditana)
ATGGTGGGGCCGAGGGAGGGGGGGGAGGTCAGGCAGGAGAGGGGGAAGAA
GGAGGAAAGGGGGGACGCAAGGGAAGGAATCGTCAAGGAGCAGGTGGAAA
GCGAAGAGGAGGGAGGAGGCGAGGAGGAGGGAGGGAGCGAGGAGGAGGGA
GGGAGCGAAGGAGAGGGTTCCTCACTGCCTTCGTCGCGGGGGGGGGAATG
CTACAGCGGGGCAGCCGGTGGCAAGAAGCGGCGGCCGGGGAAAGAGAGCC
CTGGTAGGGGAGAAAGGGGGCGCCGCGGTGGGTGCGAACGACGGAGAGGG
GCGCGTCAACGGGCGAACAGCTTCGCGGCCTACCTGGACGGTCGTCATCG
CAAAGAGTGGGAGGATCGGCACGGTCTCCCAGGTCCGGGGGAGGGCGGGC
ACGGGGCCAGGCATGGGGGAGGGCGAGGGGACCCCATGTCTGTCTTGCCC
GCAGCGCACCTGCCGCTGCCCGTGCGCCGGGTCATGTGGACGGAGAGCAC
GAGCTTTTGCCGCGACAAGCACATGTTCGACCCTCATTACGCCCGTTTCT
TGTGGGAACTCCTGCAAGTGGCCCAGCCTGGCTCGTCCTCCCTCCCGCCC
TCCCTACCCCCCGCCCTCCCGCCCTCCGCGGGCCTTCGCGCCTATGCGGC
AGGCCTTCAATACGTCTGGAATGTCTTAATCCATGCCCGAGCCCTGTCCT
CCCTCCCTTCCTGGCTCGCCACCCTCCGTTCCATCCTCCACGGCGAGGGC
AACGGCGGGAGGGAGGGCGGGAGGGAGGGCGGGAGGGAGGCTTTGTCGGG
ACAATGCGGACTCTGGACACTTTTGTATTTCGCGGACGACCCCGACGGAC
GCACCGCCGGCTTAGACTGCCTCTTGCTATGCCCCTATCCCTCCACGCGC
CTCGCCCTTGTCAGTCTCATTGTCGAGGCGATCCCCCAAGTGGACAAGAC
CGGTCTGTTGGCGGTGAGGGAGGGCTCGGGGGAGGGCGGGAGCGAGGACG
GGCTCGCGCATCCTCTGGCACGACTCATGGGCTTGTACTTGGTGGTGGTG
ACCGAGGCGGCTGGGGTGGACGGTCGTGACTTCTTCGCGTCTCGGTGGGA
GGGAATAAGCATACCCGGAGGGGCGCCGGTTGGGCCCAGCTCCTGGCTCA
CGGGCGATGCCGGGGCGCAGGGGGAAGGAGGGAGGGAGGGAGGGATGGAG
ATGGAGGCCACGCCCTCGATCACGCCCGAAGTCCTCTTGCTCCTGGTGGA
AGCAGCCGGGCAGGGACCAGACTTGCGCGCATTGCTCCGCACTCTGGGTG
GCATCGCCCGTGTGGCCGCCCTGGTTGTATCCTTGAATGGCGGGGACAAT
GCGCATTTGTTCACCCGTCCCAACCTCTTGGTCCGGGGCCAAGGCATCCT
TTCGCTCTCGCTGCGGTTGCTGGGAATGCTGGTCGCTGAGGCCTTGCCAG
AGGATTTGCAGAGACCCTCCCACCTCCGGGTACTCTCCTCCCGACGTTTT
GTGGAGTTGGCAGCTACCCTCCATCCTGACCTCACCTCCGTGATCCTCGC
CAAACTGACCACCGTGCCCTCCCTCCCCTCCTCTTTCCCTTCTTCCCTCT
CCCCCCGCCCGTCCTCGGATTGCCAGAGGGTCCGTGTCGCCATCGCCGAC
GTCGTTGGCGTGCTCGTGGACAGGACCATTGAAGCTGCGGCGCTTCAGCC
CCAGGCATCTTCCCTCCCTCCCCCATCCCGCAGTTCCGTTTCCCTCCTCA
GCTACCCACAGAGCCTCGTTGTCCCCGGTGCCCGACCTCTTTTGCGTGTT
TTGGAGGCAGTGCTGGGTCCGAGGCAGGGGCGGGGAAGGGAGGGAGGGCG
GGAAAACGCAGAGGTGGAGCAATGGCGGCTAGAGCTCTCCATGCCTTTGA
TCCATCAGTGCAGTGCGGTGTTGAGGCGAGTTGCCGAAGGAAGGCGAGGG
GGAGGACGAGGGATAGGGAGGGGAGCAGGGGGAGGGGCCTCCCATGAATT
GTCAGAGGGAGAAATGGACTTGATATGGCAAGTCACTCGGCTCTACTTTG
CACTGGCAGCACGCTCTCCCGTGGCCACTGCCTTCATGGCCGCTAAAGTG
GGTGCGACGATGACGGAATGGAGGAAGATCATCAAAGGGATGACGCCAAG
GGCGACCAAAAGGCGGTAA

Synonyms

Publications