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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100200g11.10018.mrna |
| Orig protein id | gnl|cribi|Naga_100200g11.10018 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:207601..209563 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna701 ID=rna701|Name=rna701|organism=Nannochloropsis gaditana|type=mRNA|length=4080bp
ACAGCCACTTTCCTCGCTCAACGCTTGACATTTGAACGAGACTGCTTCAG
CGACCACGGCATCGGCACATAGATTGTGAACAGCGTCGTTTTCTGAGCCA
TCACTCATTGATCTTGCAATAAGGCACTGCTTGTGCTACGTAGGTGGGTA
TGATAGAGCGGTTGCCACAGCCAGAAGCACTAAAAGCGGAGGACTGGCCG
CCTTTGACGGAAACGACGGAAGCAGCTGCACCTTCTCCTATAGCAGCAGG
CACGGAAATTAGGCATCCAAAAGAGGCAGAACTCTTATTATCTCAAGGAG
ATAGGATAGAGAGGGAGGAAAATACTCAAGAAAATTTTACAAATGGAAAG
ATAATGGACCAGGAGACCTCGATAGGCCAGGCTGGGCATGTGAAAACACG
GGACGATGGAATTGAGATAGAGGATTGCAGCCACGATTTCGCATGTGGTT
GCAGCGAAGATGGTGGAAACGACGAGCCACATGGAAAAGACAATTTGAAT
CTTTCTGACGGCACGGTGGCCCTGTACCCTCACGAAAGATTCCAATACGA
GGTCTCGCCCCTGGAGCCTGGCGCACGTCTCCACCATGTAGCAGCGGACA
TCATCTTCGATCGTTGCCTGACTTACCTCCGAAAGGACGACGGTACTATG
TACACGGAGGGGCTTTTCATGCTTCAGCCGTCGATGACACGCGTCAGGGA
GCTGCAGCGGCGCATGTCTGTGGGGGGGGGCCTGGAGGGAGCCTCTGCGT
GGGGGGCGGAGGGAGCGGAAGGGGAAGAAGAGGGAAGAGCAGGGGGTCGA
AATCAAGAAGAGACTGGAAAGGCGTCACCGCCGGTGCCCTCATCGCCACA
TGAGGTGGCAGCGCTTCTGTTGCAGCATCTCCAAGTGCGACCGGACCCGC
TCATCCCCTCCTCGCTCTACGCCGCCTGGCTCGGCTGTCAGAAGGTGCCG
GGTGAGTCCGCCCGAGGCGGGCTTGGCTGTAGCGATGGCATGGCACGCCA
AGACGGGGTCTCTGTCCACATTCTTGGCCGGGAGGGCGATGCCGCAGAGG
CCTCGAGGGAAAGTGCGGCTCCCTCGGAAAGGCGGCCGTTGTCGCCGGTG
TCGCCCAACCACGCTTTGAGCGACCCGCACGATGAGGAGGCCGGGGGGAA
ATGGGGCGATCGGTGGGGGGACGGCGGGAAAGAGAACTCGTGGAGTGCCT
TCTATGGAGCGGATGGGGTGGACAAGGAAGTGTGTGAGGTGGAGGTGGCT
GCAAGCTGTGCCGCCCGAGGCGCCGGGGAGGACCCTATCCCCCAACCCGC
CGGAGCCCCCTCAGGATCGACCGCCCGTGGCGGCGGCGCTTCTCTCCTCC
GCGTCAAGTCTGTGCTTTGCGAACTGACGGAGAAGCAGTGGCGCCAGCTG
GGAAGCCTTTTGGACTTGATGCACGCCCTGGCCAAGGCACCCACCGGGGG
GAGCGACCTCCACGCCCCCACCGTCTCCGCCCTGGGTGCTATCCTCGGTC
CCGTCCTGAGTCGGCCGCCCGGCTCCGCCTACCTCTCGATCAGACACACC
CGAGACGTGCCCGCGCTCGCCTCCTTGGGGGCCACCGTCGTCGAGCACGC
GCCAGAGCTGCTGGCGTGCAGGGGGGAGGGGGAGCAGCTGGGTGGCGGGA
GTGAGGCACACGAGGCGGGGCAAGGCGCCAGTGTCGTGGGGGCGGAGGAC
CGTGCAGAGAGGGAAGCGGAAGAAAGGGGTGCGTCTCCCGTACGAGCCGC
TCGGCCTTGGAGCAGTGCCACCGCTTCGAGCCCCGGCCACCGGGACTCAC
GAGATGGACACGAGAGGGCCCCCCGTGCCCTCTCACCCCCTTGCTCGCCG
CCTGTCAGTATCCTTCTCTCCCACGGGGGCCCTGCCCTCTTCGTCTCCCC
CCTCGGCGACGCCCAGCAGTCCGATGGGCTCCCTTCGAGTCATGGATCAT
CCCCTCTGCCCCAGCAGAACGCACGGGAAGTAGAGCACCGGCTCCTCCAG
CAGGCGGAGCACCTTGATCGTCAGAGGCAACAGGTGGAAGCGGCCAGGGC
GGTGCTAACTGAGCGACTGATGCCCGGTCTGAGCAAGAGGCTCTTTTCGG
AGAGAACAGAAGATCGCCTCTCCCAGGCTTCTGGCCTCGTTGCGTGCTTC
GAGGAAGACAGCTGTCCAAGCCAACATAACTCTATATGCCGTACCCAGAG
TGGACGCAGCGCCCAGCTTTCTTCAGAGCAGCAGCTGTTCGGAGCTGAGC
GGTCGAATCCTCCCCTTCCTGCCTCGTCGGACACGCCTGCTCCTCCTCCT
CCTCTTACCGTGCCCTCTGTACCTTGTTCTCCCCCTCTGATTCCTCATCC
GTCATCGCCTGATCTCAAGTGTCTACCGCACGGCCCCCCCGTACCCTTAA
CTCCTCTTTCTCAACAACTTGACCTGGACCAAGAGACGGGGAAGCAAGCC
TTGATAGTCGAAAGCAGCATAAATGGTGGGGAGCACGAGCCACGCTGGAG
GGAGGACACCGAGGGCTCCAATGTGTCTACACAGGCACAGACAAGGGGAT
GGAAGGCAATTGAAAAAAATCGAGCGGTCAAGATCCTGCAGCGGTTGGCG
TTGACATTCGTGAGGCGACAGCGAAAGCGGAAACACCTGACAGTCAAGGA
GCAAAAAGCAGCGCCTTGCGAGGCTGCCAGGGTGATAGAGGTGGCGCCTG
TCCTTGGGGTATCCGAGGCGAGTCTTACTGTGCAAGCGCTAGGTCCATGC
TGCGAAGCACGTTCCAGTAGTCCTCTTGCGCATCCTACCAGTGGCGTGAA
CCAGACATGCAACGCTTTTACACCAGAGGGCGATGCGTGGGAGGCCATGA
GGTACTGGAAACCTGCGATCCATACGAAAACTAGCAATCTTGAGGAGAGG
AAGCAAGTTATTCCTCCTTTAAAACACTTATTATCAAAAGCAGCTTCCAT
TCCGTCCTCCTCGGAATTTCAGGCTTTGCTAAGGGAGAAAAAGCGGGTGA
AAGCTCGTTTGAAGAAATTCAACGCTGCATTTCTGGAGAATCATGGCCGC
CTTCCGAGTATGCACGACAAAGAGCCTATGCGGAGGTTTTACAGGGAGTA
TAATTTACTAAAACTCCAGATAGCCAAGGCCCTGGAGAAGTATCAAGGCA
ACCGGCAGGAAGAGTCAAGGGGAAAGGGCGTAGGAGAAACCTCCGGCAGG
CCTCGCGACGGGGCTCAGCCCGAAACGCGTGTCGGGGAAAGCAACGAGGA
GGCCTCGATGACCTACTGGGGGATAATAACCCCCGGAAAGGACTCTCAGC
GCAGCGGCTTGCCTCCTCCAAGCCCTCGGAGAGGAGGCGATCTTCCCATT
GTCTACAGTCCGACACGAGGACAACCGAGCACATCCGACAATCTGATAGG
GGGAGAGATGGCCTCAATGAACCGTCTTTGCAATCTTTCTCAGAGGTCAG
ACTCGAATTTATCTGAGGCCTCTGACGTGCAAACTTTGCGGAGAGAAAAA
AAGAAGCTTCACGTAGTCCTACGGAAGTTCGAATCATCTTTTCGTGAACA
ATACGGCAGACGCATTCTCACTGCGAAAGACATAGCGCCTGTTGAAAAGC
AGTATGAGCGTTACATACACATTAAAAGCAAGCTGGCGACACTTGCATTG
ATGGAAAAGAGCGAGGAAATCAGCGAACAGAAGGAAACGATAAAGTCTCG
GAATATTCTGAACACTTTCCACGAGTAAATCGCCAACATAACGGCAAATG
GCTTTGTCATAGTCATACACATAGAAAAATAATGAAAAACCATTATTATA
CATATACTTTACGAGAACTATTTGATAGATGTCCATGTCTATAGATGTCC
ATGTCTATCGACTTTGTATAGGGTCTTAACAGACTCTTTATTTCCAGAAA
CCCTTGATTTTTAAAAATCGTACAATGTATAGGGTGCGAGGTATGATAAA
CAATGATACGGGTGCGAGGTATGATAAACAATGATACGGGTTACTCTGAA
GAGATTGTTTTCCTTGGACGACGAATGATTATATTTCGTGGTAGCCGATA
GTGTTACATCCTAAAAGGATCCAATTTAAT back to topprotein sequence of rna701 >rna701-protein ID=rna701-protein|Name=rna701|organism=Nannochloropsis gaditana|type=polypeptide|length=440bp
MRIPERRDNSGVEGGMKRFTRRRTSDMEAAHQTSSSTPPINVAAGNDEAV
DLPSSTTSHAQSMAGFNTDSQHPGATSPPPTKPPRVVTPTTAMNAGKSWW
WPWKNVFIAFGVALVLSVTVKGFGSFTNMEDNGFALVAATAPGSHWGNWR
SMTRCDCKAFQQCTAALAKAKTLSATRVGRFIQLATCQLATGQDEDCQLH
DKELKRGLTRFRFFFPDLVLRLRLAADFRWWVRLGCYFLMSCALLEIIFY
LVETTRLRWHRRRTLGEDPGSWWEKEISVWLFLVVWHEALSYLVHYVYSD
SHTMCDGVGLFFRDAMALYTLIQVFTRAVVKRGPNAHRAWLLQAEQKYLA
LQHRPWWVQVVRDPRVGAFHTFSGVELKITEDPVGFVSNLVLTLTSIAKK
VLSWLPSDVQALVPGLGGGRPVEGSSSYGSSGGRDTSKDE back to topmRNA from alignment at CM002456.1:207601..209563+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna701 ID=rna701|Name=rna701|organism=Nannochloropsis gaditana|type=mRNA|length=1963bp|location=Sequence derived from alignment at CM002456.1:207601..209563+ (Nannochloropsis gaditana)
ATGAGGTATTTCTGAAGCAAAGATGTGAATGCCAATATTTTCATTCAGTA
AGATGTGTATTTTCGATGAAAATCGTCGGTACTCGACGCACTTCAATTTT
TCAATGCACGGATCCCCTTACTCGGGGCTGAACGTTTCAATTCCACACTT
TATGTGAGCTAGATGTAATGATGTCAAGATTTGAGCAACCGGACATTGTA
GCTTATTTTTATGCTTTTAATTTAAAGCACGCAACATGATCTCCGTAGCC
CAGGTAAACCCATCTTTACAACCTCTGGCGGACTGTATGCACGTGTCGTG
TtaaaaaaatcaaaattCAACGGTCCAGGGAACCCAAGATTtaaaaaatt
gcgcgaaaagggAGCCAAGATGATGCGGGGATATAAAGTCTTATGTGCTT
TTCGATGGTTTGCAAAAAATCGCCGTCGCAGGCCAGAATTATTTTCGGCT
GATGGATGTATTTAATTACTTTTATCTGCCCTTGGTACCGACAGAATCCC
GGAGCGTCGTGATAACAGCGGAGTTGAGGGTGGGATGAAGCGCTTTACTC
GGAGACGAACCTCTGACATGGAGGCCGCCCATCAAACATCCTCTTCGACC
CCGCCAATTAATGTTGCTGCGGGTAATGATGAAGCGGTGGATCTGCCCTC
CTCAACCACCTCTCATGCTCAGTCCATGGCGGGCTTCAACACCGATTCAC
AGCACCCGGGCGCgacgtctccccctcccacaaAACCTCCTCGCGTCGTC
ACCCCAACCACGGCGATGAACGCTGGAAAATCATGGTGGTGGCCTTGGAA
AAACGTTTTCATTGCATTCGGTGTTGCGTTGGTGTTAAGCGTGACAGTCA
AAGGTTTTGGTTCCTTCACGAATATGGAAGACAATGGCTTTGCCTTGGTC
GCCGCCACGGCTCCCGGGTCGCATTGGGGCAATTGGCGGAGCATGACCCG
TTGCGATTGCAAGGCCTTTCAACAATGCACTGCCGCGTTGGCGAAAGCGA
AAACTCTCTCTGCGACCCGCGTCGGCCGCTTCATCCAGCTTGCGACGTGT
CAGCTTGCCACGGGCCAAGATGAAGACTGCCAATTGCACGACAAGGAGCT
CAAGCGTGGTCTGACCCGCTTtcgtttcttcttccctgaCCTCGTGCTCC
GGCTGCGCTTGGCCGCAGATTTCAGGTGGTGGGTTCGGCTGGGCTGTTAT
TTCTTGATGTCTTGCGCCTTGTTGGAGATCATTTTCTACCTGGTGGAGAC
GACCCGTCTACGGTGGCACCGGCGACGGACACTAGGGGAAGACCCAGGAA
GctggtgggaaaaggagataTCCGTGTGGCTGTTCTTGGTTGTGTGGCAC
GAGGCCCTGAGCTACCTGGTCCACTACGTGTACAGCGACAGCCACACGAT
GTGCGACGGGGTCGGCCTCTTCTTTCGGGACGCCATGGCCCTGTACACCT
TGATCCAGGTCTTTACAAGGGCCGTGGTCAAACGCGGTCCCAATGCCCAC
CGTGCCTGGCTCCTACAAGCCGAACAGAAATATTTGGCCCTCCAGCACCG
GCCCTGGTGGGTGCAGGTGGTCCGGGACCCGCGTGTGGGCGCTTTCCATA
CGTTTTCAGGGGTGGAACTGAAAATTACGGAAGACCCCGTGGGGTTTGTC
AGCAATTTGGTGCTGACCCTCACGAGCATTGCCAAGAAGGTGTTGAGCTG
GTTGCCCTCGGACGTGCAGGCGTTGGTGCCTGGGCtggggggcggaaggc
cgGTGGAAGGGTCTTCTTCGTATGGTtcaagcggggggagggacacgTCG
AAAGATGAATAAGCCACATGCGATGAAGTAACAAGGAAGATACAGAGGCT
GGCAGCGGCCGACGGGAGAAATGCGAAAATACGATCGAAAAGGAATGCAA
AATGCTGGACAGAAAGTCGAAAAAGATGACACCCTCCGTGGGGATCGCGG
AGAGCAACTTGCC back to topCoding sequence (CDS) from alignment at CM002456.1:207601..209563+ >rna701 ID=rna701|Name=rna701|organism=Nannochloropsis gaditana|type=CDS|length=2646bp|location=Sequence derived from alignment at CM002456.1:207601..209563+ (Nannochloropsis gaditana)
ATGAGAATCCCGGAGCGTCGTGATAACAGCGGAGTTGAGGGTGGGATGAA
GCGCTTTACTCGGAGACGAACCTCTGACATGGAGGCCGCCCATCAAACAT
CCTCTTCGACCCCGCCAATTAATGTTGCTGCGGGTAATGATGAAGCGGTG
GATCTGCCCTCCTCAACCACCTCTCATGCTCAGTCCATGGCGGGCTTCAA
CACCGATTCACAGCACCCGGGCGCgacgtctccccctcccacaaAACCTC
CTCGCGTCGTCACCCCAACCACGGCGATGAACGCTGGAAAATCATGGTGG
TGGCCTTGGAAAAACGTTTTCATTGCATTCGGTGTTGCGTTGGTGTTAAG
CGTGACAGTCAAAGGTTTTGGTTCCTTCACGAATATGGAAGACAATGGCT
TTGCCTTGGTCGCCGCCACGGCTCCCGGGTCGCATTGGGGCAATTGGCGG
AGCATGACCCGTTGCGATTGCAAGGCCTTTCAACAATGCACTGCCGCGTT
GGCGAAAGCGAAAACTCTCTCTGCGACCCGCGTCGGCCGCTTCATCCAGC
TTGCGACGTGTCAGCTTGCCACGGGCCAAGATGAAGACTGCCAATTGCAC
GACAAGGAGCTCAAGCGTGGTCTGACCCGCTTtcgtttcttcttccctga
CCTCGTGCTCCGGCTGCGCTTGGCCGCAGATTTCAGGTGGTGGGTTCGGC
TGGGCTGTTATTTCTTGATGTCTTGCGCCTTGTTGGAGATCATTTTCTAC
CTGGTGGAGACGACCCGTCTACGGTGGCACCGGCGACGGACACTAGGGGA
AGACCCAGGAAGctggtgggaaaaggagataTCCGTGTGGCTGTTCTTGG
TTGTGTGGCACGAGGCCCTGAGCTACCTGGTCCACTACGTGTACAGCGAC
AGCCACACGATGTGCGACGGGGTCGGCCTCTTCTTTCGGGACGCCATGGC
CCTGTACACCTTGATCCAGGTCTTTACAAGGGCCGTGGTCAAACGCGGTC
CCAATGCCCACCGTGCCTGGCTCCTACAAGCCGAACAGAAATATTTGGCC
CTCCAGCACCGGCCCTGGTGGGTGCAGGTGGTCCGGGACCCGCGTGTGGG
CGCTTTCCATACGTTTTCAGGGGTGGAACTGAAAATTACGGAAGACCCCG
TGGGGTTTGTCAGCAATTTGGTGCTGACCCTCACGAGCATTGCCAAGAAG
GTGTTGAGCTGGTTGCCCTCGGACGTGCAGGCGTTGGTGCCTGGGCtggg
gggcggaaggccgGTGGAAGGGTCTTCTTCGTATGGTtcaagcgggggga
gggacacgTCGAAAGATGAATAAATGAGAATCCCGGAGCGTCGTGATAAC
AGCGGAGTTGAGGGTGGGATGAAGCGCTTTACTCGGAGACGAACCTCTGA
CATGGAGGCCGCCCATCAAACATCCTCTTCGACCCCGCCAATTAATGTTG
CTGCGGGTAATGATGAAGCGGTGGATCTGCCCTCCTCAACCACCTCTCAT
GCTCAGTCCATGGCGGGCTTCAACACCGATTCACAGCACCCGGGCGCgac
gtctccccctcccacaaAACCTCCTCGCGTCGTCACCCCAACCACGGCGA
TGAACGCTGGAAAATCATGGTGGTGGCCTTGGAAAAACGTTTTCATTGCA
TTCGGTGTTGCGTTGGTGTTAAGCGTGACAGTCAAAGGTTTTGGTTCCTT
CACGAATATGGAAGACAATGGCTTTGCCTTGGTCGCCGCCACGGCTCCCG
GGTCGCATTGGGGCAATTGGCGGAGCATGACCCGTTGCGATTGCAAGGCC
TTTCAACAATGCACTGCCGCGTTGGCGAAAGCGAAAACTCTCTCTGCGAC
CCGCGTCGGCCGCTTCATCCAGCTTGCGACGTGTCAGCTTGCCACGGGCC
AAGATGAAGACTGCCAATTGCACGACAAGGAGCTCAAGCGTGGTCTGACC
CGCTTtcgtttcttcttccctgaCCTCGTGCTCCGGCTGCGCTTGGCCGC
AGATTTCAGGTGGTGGGTTCGGCTGGGCTGTTATTTCTTGATGTCTTGCG
CCTTGTTGGAGATCATTTTCTACCTGGTGGAGACGACCCGTCTACGGTGG
CACCGGCGACGGACACTAGGGGAAGACCCAGGAAGctggtgggaaaagga
gataTCCGTGTGGCTGTTCTTGGTTGTGTGGCACGAGGCCCTGAGCTACC
TGGTCCACTACGTGTACAGCGACAGCCACACGATGTGCGACGGGGTCGGC
CTCTTCTTTCGGGACGCCATGGCCCTGTACACCTTGATCCAGGTCTTTAC
AAGGGCCGTGGTCAAACGCGGTCCCAATGCCCACCGTGCCTGGCTCCTAC
AAGCCGAACAGAAATATTTGGCCCTCCAGCACCGGCCCTGGTGGGTGCAG
GTGGTCCGGGACCCGCGTGTGGGCGCTTTCCATACGTTTTCAGGGGTGGA
ACTGAAAATTACGGAAGACCCCGTGGGGTTTGTCAGCAATTTGGTGCTGA
CCCTCACGAGCATTGCCAAGAAGGTGTTGAGCTGGTTGCCCTCGGACGTG
CAGGCGTTGGTGCCTGGGCtggggggcggaaggccgGTGGAAGGGTCTTC
TTCGTATGGTtcaagcggggggagggacacgTCGAAAGATGAATAA back to top
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