EWM29978.1, cds696 (CDS) Nannochloropsis gaditana

Overview
NameEWM29978.1
Unique Namecds696
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:183486..184367 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29978.1
Productsmall nucleolar ribonucleoprotein complex subunit utp14
Orig transcript idgnl|cribi|Naga_100360g1.4055.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:183486..184367 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006364rRNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
GO:0032040small-subunit processome
Vocabulary: INTERPRO
TermDefinition
IPR006709SSU_processome_Utp14
Homology
BLAST of EWM29978.1 vs. NCBI_GenBank
Match: gi|585112584|gb|EWM29978.1| (small nucleolar ribonucleoprotein complex subunit utp14 [Nannochloropsis gaditana])

HSP 1 Score: 573.548 bits (1477), Expect = 0.000e+0
Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 0
Query:    1 MQAEGGGEGGGEGGGEGGKEVSGQAKGEGKRKRRRTKRESDGGRDRSGLEAGDGSDEGESEREEEGSQGRWVHTKEQADLVRRAFASVDVAEDFAQEKAEAIAEEEAEAEAAAAQKKGGKHGGAQMTAMPGWGTWAGPGASPPPFPTVSANKRAVRKMATGEKKENASSVAPTGRKGVMGWEGGGGRQEVAGVSGSTTVDKALVKPRLDRALPTVLINERRVKKTAVLKVAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKLRKTHRAVFPKS 293
            MQAEGGGEGGGEGGGEGGKEVSGQAKGEGKRKRRRTKRESDGGRDRSGLEAGDGSDEGESEREEEGSQGRWVHTKEQADLVRRAFASVDVAEDFAQEKAEAIAEEEAEAEAAAAQKKGGKHGGAQMTAMPGWGTWAGPGASPPPFPTVSANKRAVRKMATGEKKENASSVAPTGRKGVMGWEGGGGRQEVAGVSGSTTVDKALVKPRLDRALPTVLINERRVKKTAVLKVAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKLRKTHRAVFPKS
Sbjct:    1 MQAEGGGEGGGEGGGEGGKEVSGQAKGEGKRKRRRTKRESDGGRDRSGLEAGDGSDEGESEREEEGSQGRWVHTKEQADLVRRAFASVDVAEDFAQEKAEAIAEEEAEAEAAAAQKKGGKHGGAQMTAMPGWGTWAGPGASPPPFPTVSANKRAVRKMATGEKKENASSVAPTGRKGVMGWEGGGGRQEVAGVSGSTTVDKALVKPRLDRALPTVLINERRVKKTAVLKVAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKLRKTHRAVFPKS 293          
BLAST of EWM29978.1 vs. NCBI_GenBank
Match: gi|299473144|emb|CBN78720.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 131.724 bits (330), Expect = 9.444e-31
Identity = 81/209 (38.76%), Postives = 106/209 (50.72%), Query Frame = 0
Query:   79 DLVRRAFASVDVAEDFAQEKAEAIAEEEAEAEAAAAQKKGGKHGGAQMTAMPGWGTWAGPGASPPPFPTVSANKRAVRKMATGEKKENASSVAPTGRKGVMGWEGGGGRQEVAGVSGSTTVDKALVKPRLDRALPTVLINERRVKKTAVLKVAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKLRKTHR 287
            +LVRRAFA+ D   +F   K     ++E E E A  ++K           + GWG WAG GA  P  PT                                       + +V   +     ++A+ K R D  LP V++NE+R K++A   V++VPYPFTSREQYERSLR+PIG EWNT+ +VR  TRPAV VRAG  V P+KL K HR
Sbjct:  988 ELVRRAFAAPDFESEFKDSK-----DDEIEGELAKGREK-------LPGTLAGWGAWAGDGAPAPRGPT---------------------------------------KHQVLAKNAQVKKEEAIKKARKDDRLPKVVLNEKRQKRSAKYMVSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAVMVRAGVAVAPMKLGKIHR 1145          
BLAST of EWM29978.1 vs. NCBI_GenBank
Match: gi|1173932801|gb|OQR84706.1| (U3 small nucleolar RNA-associated protein, partial [Thraustotheca clavata])

HSP 1 Score: 107.457 bits (267), Expect = 8.984e-24
Identity = 70/211 (33.18%), Postives = 106/211 (50.24%), Query Frame = 0
Query:   77 QADLVRRAFASVDVAEDFAQEKAEAIAEEEAEAEAAAAQKKGGKHGGAQMTAMPGWGTWAGPGASPPPFPTVSANKRAVRKMATGEKKENASSVAPTGRKGVMGWEGGGGRQEVAGVSGSTTVDKALVKPRLDRALPTVLINERRVKKTAVLKVAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKLRKTHR 287
            Q +LVRRAFA  D  ++  +EK E +A ++ EA++ A          A++T M GWG+WAG G        V  ++R ++++   +K    +  A   +                               R D  +  VLINE++ KK A    A VPYPFTSREQYE ++R P+G +WNTT +    T PAV +RAG +++P++L K  +
Sbjct:  105 QDELVRRAFAFADDGDEIQKEKDE-LAAQDGEAKSGAE--------VAKLTGMSGWGSWAGEG--------VKQSQRQLQRLELAKKVAADAKTAALAK-------------------------------RKDAKMARVLINEKKDKKAAKFMCATVPYPFTSREQYEMAMRNPLGSDWNTTKSTNALTVPAVMLRAGKIIQPLQLTKEQK 267          
BLAST of EWM29978.1 vs. NCBI_GenBank
Match: gi|1173942555|gb|OQR91532.1| (U3 small nucleolar RNA-associated protein [Achlya hypogyna])

HSP 1 Score: 111.309 bits (277), Expect = 1.179e-23
Identity = 81/215 (37.67%), Postives = 102/215 (47.44%), Query Frame = 0
Query:   77 QADLVRRAFASVDVAEDFAQEKAEAIAEEEAEAEAAAAQKKGGKHGG--AQMTAMPGWGTWAGPGASPPPFPTVSANKRAVRKMATGEKKENASSVAPTGRKGVMGWEGGGGRQEVAGVSGSTTVDKALVKPRLDRALPTVLINERRVKKTAVLKVAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKLRKTHRAV 289
            Q +LVRRAFA  D  ED          E  AE +  AA+    K G   A++T M GWG+WAG G                                 T R+ +        R E A    +     AL K R D  +  VLINE++ KK A    A VPYPFTSREQYE ++R P+G +WNTT A  E T PAV +RAG +++P+ L K  RAV
Sbjct:  706 QDELVRRAFAFADEGED----------EIGAEKDRLAAEDGDAKSGAEVAKLTGMTGWGSWAGEGVK-------------------------------TSRRQL-------ARLEQAKAVAAAAKQTALNK-RKDAKMQRVLINEKKDKKAAKFMCATVPYPFTSREQYELAMRNPLGSDWNTTKAANELTAPAVMLRAGKIIQPLALTKQERAV 871          
BLAST of EWM29978.1 vs. NCBI_GenBank
Match: gi|673017200|ref|XP_008862561.1| (hypothetical protein H310_01274 [Aphanomyces invadans] >gi|574481764|gb|ETW08756.1| hypothetical protein H310_01274 [Aphanomyces invadans])

HSP 1 Score: 110.538 bits (275), Expect = 1.892e-23
Identity = 75/212 (35.38%), Postives = 105/212 (49.53%), Query Frame = 0
Query:   77 QADLVRRAFASVDVAEDFAQEKAEAIAEEEAEAEAAAAQKKGGKHGGAQMTAMPGWGTWAGPGASPPPFPTVSANKRAVRKMATGEKKENASSVAPTGRKGVMGWEGGGGRQEVAGVSGSTTVDKALVKPRLDRALPTVLINERRVKKTAVLKVAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKLRKTHRA 288
            Q +LVR+AFA  +  E+  Q++ + +A  +A+ +  A          A++T M GWG+WAG G  P                    K++NA  +A   RK V   E                   AL K R D  + TVLINE++ KK A   V+ VPYPFTSREQYE ++R P+G +WNT  A    T P V  RAG ++EP++L    +A
Sbjct:  735 QEELVRKAFAFAEDTENEIQKEKDLLAARDADVKVGAE--------VARLTGMEGWGSWAGQGIKP-------------------SKRQNA-RLALAQRKVVEATEA------------------ALAK-RKDSKMETVLINEKKDKKAAKFMVSTVPYPFTSREQYELAMRNPLGSDWNTARASNALTVPEVMTRAGKMIEPLRLTNEQKA 899          
BLAST of EWM29978.1 vs. NCBI_GenBank
Match: gi|813199956|ref|XP_012209549.1| (hypothetical protein SPRG_15068 [Saprolegnia parasitica CBS 223.65] >gi|641525262|gb|KDO19738.1| hypothetical protein SPRG_15068 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 100.138 bits (248), Expect = 1.520e-20
Identity = 72/208 (34.62%), Postives = 99/208 (47.60%), Query Frame = 0
Query:   77 QADLVRRAFASVDVAEDFAQEKAEAIAEEEAEAEAAAAQKKGGKHGG--AQMTAMPGWGTWAGPGASPPPFPTVSANKRAVRKMATGEKKENASSVAPTGRKGVMGWEGGGGRQEVAGVSGSTTVDKALVKPRLDRALPTVLINERRVKKTAVLKVAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKL 282
            Q +LVRRAFA  D  +D          E  AE +  AA+    K G   A++T M GWG+WAG G        V  +KR + ++   +    A+ +A   +                               R D  L  VLINE++ KK A   VA VPYPFTSREQYE ++R P+G +WNTT +    T P V +RAG +++P+ L
Sbjct:  178 QDELVRRAFAFADEGDD----------EIGAEKDRIAAEDGDAKSGAEVAKLTGMTGWGSWAGEG--------VKTSKRQLARLEQAKAVAAAAKLAALNK-------------------------------RKDAKLSRVLINEKKDKKAAKFMVASVPYPFTSREQYELAMRNPLGADWNTTKSANALTAPEVMLRAGQIIQPLVL 336          
BLAST of EWM29978.1 vs. NCBI_GenBank
Match: gi|189191270|ref|XP_001931974.1| (small nucleolar ribonucleoprotein complex subunit Utp14 [Pyrenophora tritici-repentis Pt-1C-BFP] >gi|187973580|gb|EDU41079.1| small nucleolar ribonucleoprotein complex subunit Utp14 [Pyrenophora tritici-repentis Pt-1C-BFP])

HSP 1 Score: 101.679 bits (252), Expect = 2.288e-20
Identity = 76/229 (33.19%), Postives = 107/229 (46.72%), Query Frame = 0
Query:   53 DGSDEGESEREEEGSQGRWVHTKEQADLVRRAFASVDVAEDFAQEKAEAIAEEEAEAEAAAAQKKGGKHGGAQMTAMPGWGTWAGPGASPPPFPTVSANKRAVRKMATGEKKENASSVAPTGRKGVMGWEGGGGRQEVAGVSGSTTVDKALVKPRLDRALPTVLINERRVKKTAVLKVAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIK 281
            D SD+ ++  EEEG     VH + QA L  + FA  +V   F+ EKA  IAEEE+                  ++ +PGWG W G G                  M+  E+K N  + + T + G+                   + DK     R DR L  V+INE+RVK T       +P+PF +REQYERSLR P GKEW T    ++ TRP V V+ G +++P++
Sbjct:  790 DDSDQNDAALEEEGIDLDLVH-RNQA-LTAKGFAGDNVEATFSAEKAATIAEEES---------------SETVSYLPGWGAWTGHG------------------MSKAEQKRNLGAKSVTQKPGI-------------------SADK-----RKDRKLDKVIINEKRVKPTVKYMAGTLPFPFENREQYERSLRVPKGKEWVTKKTHQDVTRPRVIVKQG-VIKPLR 958          
BLAST of EWM29978.1 vs. NCBI_GenBank
Match: gi|669166176|ref|XP_008618650.1| (hypothetical protein SDRG_14306 [Saprolegnia diclina VS20] >gi|530729643|gb|EQC27885.1| hypothetical protein SDRG_14306 [Saprolegnia diclina VS20])

HSP 1 Score: 100.523 bits (249), Expect = 4.575e-20
Identity = 70/206 (33.98%), Postives = 101/206 (49.03%), Query Frame = 0
Query:   77 QADLVRRAFASVDVAEDFAQEKAEAIAEEEAEAEAAAAQKKGGKHGGAQMTAMPGWGTWAGPGASPPPFPTVSANKRAVRKMATGEKKENASSVAPTGRKGVMGWEGGGGRQEVAGVSGSTTVDKALVKPRLDRALPTVLINERRVKKTAVLKVAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKL 282
            Q +LVRRAFA  D  +D    + + IA E+ +A++ A          A++T M GWG+WAG G        V  +KR + ++   +    A+ +A   +                               R D  L  VLINE++ KK A   VA VPYPFTSREQYE ++R P+G +WNTT +    T P V +RAG +++P+ L
Sbjct:  758 QEELVRRAFAFADEGDDEIGAEKDRIAAEDGDAKSGA--------EVAKLTGMTGWGSWAGEG--------VKTSKRQLARLEQAKAVAAAAKLAALSK-------------------------------RKDAKLSRVLINEKKDKKAAKFMVASVPYPFTSREQYELAMRNPLGADWNTTKSANALTAPEVMLRAGQIIQPLVL 916          
BLAST of EWM29978.1 vs. NCBI_GenBank
Match: gi|698777028|ref|XP_009821558.1| (hypothetical protein H257_00526 [Aphanomyces astaci] >gi|574123683|gb|ETV89158.1| hypothetical protein H257_00526 [Aphanomyces astaci])

HSP 1 Score: 100.138 bits (248), Expect = 6.383e-20
Identity = 73/217 (33.64%), Postives = 101/217 (46.54%), Query Frame = 0
Query:   77 QADLVRRAFASVDVAEDFAQEKAEAIAEEEAEAEAAAAQKKGGKHGG--AQMTAMPGWGTWAGPGASPPPFPTVSANKRAVRKMATGEKKENASSVAPTGRKGVMGWEGGGGRQEVAGVSGSTTVDKALVKPRLDRALPTVLINERRVKKTAVLKVAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKLRKTHRAVFP 291
            Q +LVR+AFA       FA++    IA+E+   E  AA+    K G   A++T M GWG+WAG G  P        +KR   ++A   +                        QE    + +            D  +  VLINE++ KK A   V  VPYPFTSREQYE ++R P+G +WNT  A    T P V  RAG +++P++L    RA  P
Sbjct:  737 QEELVRKAFA-------FAEDTENEIAKEK---ELLAARDADVKVGAEVARLTGMEGWGSWAGEGIKP--------SKRQNARLALAHR----------------------TVQEAKAAALAKRK---------DHKMDAVLINEKKDKKAAKFMVNTVPYPFTSREQYELAMRNPLGSDWNTARASNAMTVPEVMTRAGKIIQPLRLTNEQRAPKP 904          
BLAST of EWM29978.1 vs. NCBI_GenBank
Match: gi|953501334|emb|CEG37335.1| (Uncharacterized conserved protein [Plasmopara halstedii])

HSP 1 Score: 100.138 bits (248), Expect = 6.408e-20
Identity = 73/212 (34.43%), Postives = 106/212 (50.00%), Query Frame = 0
Query:   77 QADLVRRAFASV-DVAEDFAQEKAEAIAEEEAEAEAAAAQKKGGKHGGAQMTAMPGWGTWAGPGASPPPFPTVSANKRAVRKMATGEKKENASSVAPTGRKGVMGWEGGGGRQEVAGVSGSTTVDKALVKPRLDRALPTVLINERRVKKTAVLKVAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKLRKTHR 287
            Q +LVRRAF  V D  ++ AQEK + +A ++A A      KKG +   A++  M GWG+WAG G S      VS N+ A        +++ A ++A   ++  +      GR+                    D  L  VLINER+ KK A   +  VPYPFTSR++YE ++R P+G +WNT+      T P +   AG  + P+KL K  R
Sbjct:  676 QDELVRRAFEFVADTEDELAQEK-DRLAGQDANA------KKGAE--IAKLVGMSGWGSWAGDGVS------VSKNQIA--------REQKAKNIAREAKEKAL-----AGRK--------------------DARLKHVLINERKDKKAAKFMLKDVPYPFTSRQEYEAAMRNPLGSDWNTSQVTNVLTAPKIMKHAGTAIAPLKLSKEDR 839          
The following BLAST results are available for this feature:
BLAST of EWM29978.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112584|gb|EWM29978.1|0.000e+0100.00small nucleolar ribonucleoprotein complex subunit ... [more]
gi|299473144|emb|CBN78720.1|9.444e-3138.76conserved unknown protein [Ectocarpus siliculosus][more]
gi|1173932801|gb|OQR84706.1|8.984e-2433.18U3 small nucleolar RNA-associated protein, partial... [more]
gi|1173942555|gb|OQR91532.1|1.179e-2337.67U3 small nucleolar RNA-associated protein [Achlya ... [more]
gi|673017200|ref|XP_008862561.1|1.892e-2335.38hypothetical protein H310_01274 [Aphanomyces invad... [more]
gi|813199956|ref|XP_012209549.1|1.520e-2034.62hypothetical protein SPRG_15068 [Saprolegnia paras... [more]
gi|189191270|ref|XP_001931974.1|2.288e-2033.19small nucleolar ribonucleoprotein complex subunit ... [more]
gi|669166176|ref|XP_008618650.1|4.575e-2033.98hypothetical protein SDRG_14306 [Saprolegnia dicli... [more]
gi|698777028|ref|XP_009821558.1|6.383e-2033.64hypothetical protein H257_00526 [Aphanomyces astac... [more]
gi|953501334|emb|CEG37335.1|6.408e-2034.43Uncharacterized conserved protein [Plasmopara hals... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna696rna696Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications