EWM29978.1, cds696 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29978.1 vs. NCBI_GenBank
Match: gi|585112584|gb|EWM29978.1| (small nucleolar ribonucleoprotein complex subunit utp14 [Nannochloropsis gaditana]) HSP 1 Score: 573.548 bits (1477), Expect = 0.000e+0 Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 0 Query: 1 MQAEGGGEGGGEGGGEGGKEVSGQAKGEGKRKRRRTKRESDGGRDRSGLEAGDGSDEGESEREEEGSQGRWVHTKEQADLVRRAFASVDVAEDFAQEKAEAIAEEEAEAEAAAAQKKGGKHGGAQMTAMPGWGTWAGPGASPPPFPTVSANKRAVRKMATGEKKENASSVAPTGRKGVMGWEGGGGRQEVAGVSGSTTVDKALVKPRLDRALPTVLINERRVKKTAVLKVAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKLRKTHRAVFPKS 293 MQAEGGGEGGGEGGGEGGKEVSGQAKGEGKRKRRRTKRESDGGRDRSGLEAGDGSDEGESEREEEGSQGRWVHTKEQADLVRRAFASVDVAEDFAQEKAEAIAEEEAEAEAAAAQKKGGKHGGAQMTAMPGWGTWAGPGASPPPFPTVSANKRAVRKMATGEKKENASSVAPTGRKGVMGWEGGGGRQEVAGVSGSTTVDKALVKPRLDRALPTVLINERRVKKTAVLKVAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKLRKTHRAVFPKS Sbjct: 1 MQAEGGGEGGGEGGGEGGKEVSGQAKGEGKRKRRRTKRESDGGRDRSGLEAGDGSDEGESEREEEGSQGRWVHTKEQADLVRRAFASVDVAEDFAQEKAEAIAEEEAEAEAAAAQKKGGKHGGAQMTAMPGWGTWAGPGASPPPFPTVSANKRAVRKMATGEKKENASSVAPTGRKGVMGWEGGGGRQEVAGVSGSTTVDKALVKPRLDRALPTVLINERRVKKTAVLKVAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKLRKTHRAVFPKS 293
BLAST of EWM29978.1 vs. NCBI_GenBank
Match: gi|299473144|emb|CBN78720.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 131.724 bits (330), Expect = 9.444e-31 Identity = 81/209 (38.76%), Postives = 106/209 (50.72%), Query Frame = 0 Query: 79 DLVRRAFASVDVAEDFAQEKAEAIAEEEAEAEAAAAQKKGGKHGGAQMTAMPGWGTWAGPGASPPPFPTVSANKRAVRKMATGEKKENASSVAPTGRKGVMGWEGGGGRQEVAGVSGSTTVDKALVKPRLDRALPTVLINERRVKKTAVLKVAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKLRKTHR 287 +LVRRAFA+ D +F K ++E E E A ++K + GWG WAG GA P PT + +V + ++A+ K R D LP V++NE+R K++A V++VPYPFTSREQYERSLR+PIG EWNT+ +VR TRPAV VRAG V P+KL K HR Sbjct: 988 ELVRRAFAAPDFESEFKDSK-----DDEIEGELAKGREK-------LPGTLAGWGAWAGDGAPAPRGPT---------------------------------------KHQVLAKNAQVKKEEAIKKARKDDRLPKVVLNEKRQKRSAKYMVSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAVMVRAGVAVAPMKLGKIHR 1145
BLAST of EWM29978.1 vs. NCBI_GenBank
Match: gi|1173932801|gb|OQR84706.1| (U3 small nucleolar RNA-associated protein, partial [Thraustotheca clavata]) HSP 1 Score: 107.457 bits (267), Expect = 8.984e-24 Identity = 70/211 (33.18%), Postives = 106/211 (50.24%), Query Frame = 0 Query: 77 QADLVRRAFASVDVAEDFAQEKAEAIAEEEAEAEAAAAQKKGGKHGGAQMTAMPGWGTWAGPGASPPPFPTVSANKRAVRKMATGEKKENASSVAPTGRKGVMGWEGGGGRQEVAGVSGSTTVDKALVKPRLDRALPTVLINERRVKKTAVLKVAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKLRKTHR 287 Q +LVRRAFA D ++ +EK E +A ++ EA++ A A++T M GWG+WAG G V ++R ++++ +K + A + R D + VLINE++ KK A A VPYPFTSREQYE ++R P+G +WNTT + T PAV +RAG +++P++L K + Sbjct: 105 QDELVRRAFAFADDGDEIQKEKDE-LAAQDGEAKSGAE--------VAKLTGMSGWGSWAGEG--------VKQSQRQLQRLELAKKVAADAKTAALAK-------------------------------RKDAKMARVLINEKKDKKAAKFMCATVPYPFTSREQYEMAMRNPLGSDWNTTKSTNALTVPAVMLRAGKIIQPLQLTKEQK 267
BLAST of EWM29978.1 vs. NCBI_GenBank
Match: gi|1173942555|gb|OQR91532.1| (U3 small nucleolar RNA-associated protein [Achlya hypogyna]) HSP 1 Score: 111.309 bits (277), Expect = 1.179e-23 Identity = 81/215 (37.67%), Postives = 102/215 (47.44%), Query Frame = 0 Query: 77 QADLVRRAFASVDVAEDFAQEKAEAIAEEEAEAEAAAAQKKGGKHGG--AQMTAMPGWGTWAGPGASPPPFPTVSANKRAVRKMATGEKKENASSVAPTGRKGVMGWEGGGGRQEVAGVSGSTTVDKALVKPRLDRALPTVLINERRVKKTAVLKVAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKLRKTHRAV 289 Q +LVRRAFA D ED E AE + AA+ K G A++T M GWG+WAG G T R+ + R E A + AL K R D + VLINE++ KK A A VPYPFTSREQYE ++R P+G +WNTT A E T PAV +RAG +++P+ L K RAV Sbjct: 706 QDELVRRAFAFADEGED----------EIGAEKDRLAAEDGDAKSGAEVAKLTGMTGWGSWAGEGVK-------------------------------TSRRQL-------ARLEQAKAVAAAAKQTALNK-RKDAKMQRVLINEKKDKKAAKFMCATVPYPFTSREQYELAMRNPLGSDWNTTKAANELTAPAVMLRAGKIIQPLALTKQERAV 871
BLAST of EWM29978.1 vs. NCBI_GenBank
Match: gi|673017200|ref|XP_008862561.1| (hypothetical protein H310_01274 [Aphanomyces invadans] >gi|574481764|gb|ETW08756.1| hypothetical protein H310_01274 [Aphanomyces invadans]) HSP 1 Score: 110.538 bits (275), Expect = 1.892e-23 Identity = 75/212 (35.38%), Postives = 105/212 (49.53%), Query Frame = 0 Query: 77 QADLVRRAFASVDVAEDFAQEKAEAIAEEEAEAEAAAAQKKGGKHGGAQMTAMPGWGTWAGPGASPPPFPTVSANKRAVRKMATGEKKENASSVAPTGRKGVMGWEGGGGRQEVAGVSGSTTVDKALVKPRLDRALPTVLINERRVKKTAVLKVAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKLRKTHRA 288 Q +LVR+AFA + E+ Q++ + +A +A+ + A A++T M GWG+WAG G P K++NA +A RK V E AL K R D + TVLINE++ KK A V+ VPYPFTSREQYE ++R P+G +WNT A T P V RAG ++EP++L +A Sbjct: 735 QEELVRKAFAFAEDTENEIQKEKDLLAARDADVKVGAE--------VARLTGMEGWGSWAGQGIKP-------------------SKRQNA-RLALAQRKVVEATEA------------------ALAK-RKDSKMETVLINEKKDKKAAKFMVSTVPYPFTSREQYELAMRNPLGSDWNTARASNALTVPEVMTRAGKMIEPLRLTNEQKA 899
BLAST of EWM29978.1 vs. NCBI_GenBank
Match: gi|813199956|ref|XP_012209549.1| (hypothetical protein SPRG_15068 [Saprolegnia parasitica CBS 223.65] >gi|641525262|gb|KDO19738.1| hypothetical protein SPRG_15068 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 100.138 bits (248), Expect = 1.520e-20 Identity = 72/208 (34.62%), Postives = 99/208 (47.60%), Query Frame = 0 Query: 77 QADLVRRAFASVDVAEDFAQEKAEAIAEEEAEAEAAAAQKKGGKHGG--AQMTAMPGWGTWAGPGASPPPFPTVSANKRAVRKMATGEKKENASSVAPTGRKGVMGWEGGGGRQEVAGVSGSTTVDKALVKPRLDRALPTVLINERRVKKTAVLKVAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKL 282 Q +LVRRAFA D +D E AE + AA+ K G A++T M GWG+WAG G V +KR + ++ + A+ +A + R D L VLINE++ KK A VA VPYPFTSREQYE ++R P+G +WNTT + T P V +RAG +++P+ L Sbjct: 178 QDELVRRAFAFADEGDD----------EIGAEKDRIAAEDGDAKSGAEVAKLTGMTGWGSWAGEG--------VKTSKRQLARLEQAKAVAAAAKLAALNK-------------------------------RKDAKLSRVLINEKKDKKAAKFMVASVPYPFTSREQYELAMRNPLGADWNTTKSANALTAPEVMLRAGQIIQPLVL 336
BLAST of EWM29978.1 vs. NCBI_GenBank
Match: gi|189191270|ref|XP_001931974.1| (small nucleolar ribonucleoprotein complex subunit Utp14 [Pyrenophora tritici-repentis Pt-1C-BFP] >gi|187973580|gb|EDU41079.1| small nucleolar ribonucleoprotein complex subunit Utp14 [Pyrenophora tritici-repentis Pt-1C-BFP]) HSP 1 Score: 101.679 bits (252), Expect = 2.288e-20 Identity = 76/229 (33.19%), Postives = 107/229 (46.72%), Query Frame = 0 Query: 53 DGSDEGESEREEEGSQGRWVHTKEQADLVRRAFASVDVAEDFAQEKAEAIAEEEAEAEAAAAQKKGGKHGGAQMTAMPGWGTWAGPGASPPPFPTVSANKRAVRKMATGEKKENASSVAPTGRKGVMGWEGGGGRQEVAGVSGSTTVDKALVKPRLDRALPTVLINERRVKKTAVLKVAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIK 281 D SD+ ++ EEEG VH + QA L + FA +V F+ EKA IAEEE+ ++ +PGWG W G G M+ E+K N + + T + G+ + DK R DR L V+INE+RVK T +P+PF +REQYERSLR P GKEW T ++ TRP V V+ G +++P++ Sbjct: 790 DDSDQNDAALEEEGIDLDLVH-RNQA-LTAKGFAGDNVEATFSAEKAATIAEEES---------------SETVSYLPGWGAWTGHG------------------MSKAEQKRNLGAKSVTQKPGI-------------------SADK-----RKDRKLDKVIINEKRVKPTVKYMAGTLPFPFENREQYERSLRVPKGKEWVTKKTHQDVTRPRVIVKQG-VIKPLR 958
BLAST of EWM29978.1 vs. NCBI_GenBank
Match: gi|669166176|ref|XP_008618650.1| (hypothetical protein SDRG_14306 [Saprolegnia diclina VS20] >gi|530729643|gb|EQC27885.1| hypothetical protein SDRG_14306 [Saprolegnia diclina VS20]) HSP 1 Score: 100.523 bits (249), Expect = 4.575e-20 Identity = 70/206 (33.98%), Postives = 101/206 (49.03%), Query Frame = 0 Query: 77 QADLVRRAFASVDVAEDFAQEKAEAIAEEEAEAEAAAAQKKGGKHGGAQMTAMPGWGTWAGPGASPPPFPTVSANKRAVRKMATGEKKENASSVAPTGRKGVMGWEGGGGRQEVAGVSGSTTVDKALVKPRLDRALPTVLINERRVKKTAVLKVAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKL 282 Q +LVRRAFA D +D + + IA E+ +A++ A A++T M GWG+WAG G V +KR + ++ + A+ +A + R D L VLINE++ KK A VA VPYPFTSREQYE ++R P+G +WNTT + T P V +RAG +++P+ L Sbjct: 758 QEELVRRAFAFADEGDDEIGAEKDRIAAEDGDAKSGA--------EVAKLTGMTGWGSWAGEG--------VKTSKRQLARLEQAKAVAAAAKLAALSK-------------------------------RKDAKLSRVLINEKKDKKAAKFMVASVPYPFTSREQYELAMRNPLGADWNTTKSANALTAPEVMLRAGQIIQPLVL 916
BLAST of EWM29978.1 vs. NCBI_GenBank
Match: gi|698777028|ref|XP_009821558.1| (hypothetical protein H257_00526 [Aphanomyces astaci] >gi|574123683|gb|ETV89158.1| hypothetical protein H257_00526 [Aphanomyces astaci]) HSP 1 Score: 100.138 bits (248), Expect = 6.383e-20 Identity = 73/217 (33.64%), Postives = 101/217 (46.54%), Query Frame = 0 Query: 77 QADLVRRAFASVDVAEDFAQEKAEAIAEEEAEAEAAAAQKKGGKHGG--AQMTAMPGWGTWAGPGASPPPFPTVSANKRAVRKMATGEKKENASSVAPTGRKGVMGWEGGGGRQEVAGVSGSTTVDKALVKPRLDRALPTVLINERRVKKTAVLKVAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKLRKTHRAVFP 291 Q +LVR+AFA FA++ IA+E+ E AA+ K G A++T M GWG+WAG G P +KR ++A + QE + + D + VLINE++ KK A V VPYPFTSREQYE ++R P+G +WNT A T P V RAG +++P++L RA P Sbjct: 737 QEELVRKAFA-------FAEDTENEIAKEK---ELLAARDADVKVGAEVARLTGMEGWGSWAGEGIKP--------SKRQNARLALAHR----------------------TVQEAKAAALAKRK---------DHKMDAVLINEKKDKKAAKFMVNTVPYPFTSREQYELAMRNPLGSDWNTARASNAMTVPEVMTRAGKIIQPLRLTNEQRAPKP 904
BLAST of EWM29978.1 vs. NCBI_GenBank
Match: gi|953501334|emb|CEG37335.1| (Uncharacterized conserved protein [Plasmopara halstedii]) HSP 1 Score: 100.138 bits (248), Expect = 6.408e-20 Identity = 73/212 (34.43%), Postives = 106/212 (50.00%), Query Frame = 0 Query: 77 QADLVRRAFASV-DVAEDFAQEKAEAIAEEEAEAEAAAAQKKGGKHGGAQMTAMPGWGTWAGPGASPPPFPTVSANKRAVRKMATGEKKENASSVAPTGRKGVMGWEGGGGRQEVAGVSGSTTVDKALVKPRLDRALPTVLINERRVKKTAVLKVAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKLRKTHR 287 Q +LVRRAF V D ++ AQEK + +A ++A A KKG + A++ M GWG+WAG G S VS N+ A +++ A ++A ++ + GR+ D L VLINER+ KK A + VPYPFTSR++YE ++R P+G +WNT+ T P + AG + P+KL K R Sbjct: 676 QDELVRRAFEFVADTEDELAQEK-DRLAGQDANA------KKGAE--IAKLVGMSGWGSWAGDGVS------VSKNQIA--------REQKAKNIAREAKEKAL-----AGRK--------------------DARLKHVLINERKDKKAAKFMLKDVPYPFTSRQEYEAAMRNPLGSDWNTSQVTNVLTAPKIMKHAGTAIAPLKLSKEDR 839 The following BLAST results are available for this feature:
BLAST of EWM29978.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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