rna696, rna696 (mRNA) Nannochloropsis gaditana

Overview
Namerna696
Unique Namerna696
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1299
Alignment locationCM002456.1:183389..184367 -

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Properties
Property NameValue
Productsmall nucleolar ribonucleoprotein complex subunit utp14
Orig transcript idgnl|cribi|Naga_100360g1.4055.mrna
Orig protein idgnl|cribi|Naga_100360g1.4055
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:183389..184367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100360g1gene667Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29978.1cds696Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna696rna696-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna696 ID=rna696|Name=rna696|organism=Nannochloropsis gaditana|type=mRNA|length=1299bp
ATGACAGAAAGTGGAATGCGTCGGCGTGCCCCAATGAATGCTGGAGCCTG
GGGCGCCGATGCAGACAAACCGAAAGCTCCCATAGCATCGGCAAAGGTGC
TAGAGCGCATGGACGTGTTCACGAAATTCCACGACGAGGATAAAATCCAG
ACGTCGCGCGGGGCCAGCATGGCCCTGTTCTCTTGGGTTTTGGTCCTCGT
CCTCTTATGTTCCGAGGCTTATGAGGCATTTTTGACATCACGTACCAAGG
AGCATTTGGTCGTGGACACTTCTCTGGGGGATAAGCTCAACATCACCCTC
GACATGACGTTTCACGCGTTGACCTGCGCCGACGTGCACGTGGACGCCAT
GGACGTGGCGGGGGACAATCAGATGCAAGTGGAGCACAACATGCTGAAAC
AGCGCCTCTCCTCCCAAGGGGAGAGGATTGGCTTCCCCTTCTTGGAGGAC
CCGACCGACTTTGATAGCAAAAAAGCCGACGCTCTACTTGGTGCCGCTCC
TTGGGACTACTGCGGCTCCTGCTTTCAGGCCCGTACCCACACCGGGGCAT
GCTGCAATTCCTGTCAGGATTTGGAGCAAGCCTACCTGACACAGGGCCTC
CCAATGGGAAAGATCAAGACCACCGCTCCTCAGTGCCTCCCGGGTTTCCA
GGCCCCTGCTCCCTCCGGGCCCATGCAGAAGGGGGAAGGCTGTAACCTTA
AGGGCTTCATGTCCGTGAACAAAGTGGCGGGAAACTTCCACATTGCTTTC
GGCGATTCGGTTGTGAAGGACGGCCGCCACATCCATCAATTCATCCCCTC
CGAAGCCCCCTTTTTCAACGTCTCGCACACCATCCAACACGTCTCCTTTG
GGGATGAGTACCCTGGCAGGGTCAATCCTCTCGATGGGAAGGTCAAGTAT
GTGAGCTCAACCGTCGGAACGGGCCTCTTCCAATATTTCATCAAGGTCAT
CCCTACGCATTATAAAGGCCGGGCGGGCGAAGCCATCCGCACAAACCGTA
TCAGCGTCACAGAACGCTTCAAGCCTCTCCACAAAGAGGGCGAGGCCCGG
CTTACGGGTGACAGTCACGCCCACAACGATCAGACGTCGGTCCTGCCCGG
GGTCTTCTTTATCTATGACTTAAGTCCCTTCAATGTGGAGGTCTCGACTG
TCAGTGTTCCCTTCAGCCATTTTCTTGTGAAGCTCTGCGCCATCGCCGGG
GGGGTCTTTTCCATCTCCCGTTTGCTCGACAATGTCTTCTATTATTCCGG
TCTTTTCCTTGGAAAGGGCACAGGCTTCTTGGCTGGGACTCCGAGATAA
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protein sequence of rna696

>rna696-protein ID=rna696-protein|Name=rna696|organism=Nannochloropsis gaditana|type=polypeptide|length=293bp
MQAEGGGEGGGEGGGEGGKEVSGQAKGEGKRKRRRTKRESDGGRDRSGLE
AGDGSDEGESEREEEGSQGRWVHTKEQADLVRRAFASVDVAEDFAQEKAE
AIAEEEAEAEAAAAQKKGGKHGGAQMTAMPGWGTWAGPGASPPPFPTVSA
NKRAVRKMATGEKKENASSVAPTGRKGVMGWEGGGGRQEVAGVSGSTTVD
KALVKPRLDRALPTVLINERRVKKTAVLKVAQVPYPFTSREQYERSLRRP
IGKEWNTTTAVREETRPAVKVRAGFLVEPIKLRKTHRAVFPKS
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mRNA from alignment at CM002456.1:183389..184367-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna696 ID=rna696|Name=rna696|organism=Nannochloropsis gaditana|type=mRNA|length=979bp|location=Sequence derived from alignment at CM002456.1:183389..184367- (Nannochloropsis gaditana)
ATGCAGGCGGAGGGCGGGGGTGAGGGCGGGGGTGAGGGCGGGGGTGAGGG
CGGGAAGGAGGTAAGTGGACAGGCGAAAGGCGAGGGGAAGAGGAAAAGGC
GAAGGACGAAGAGGGAATCGGACGGCGGCCGAGACAGGAGTGGACTAGAG
GCGGGGGATGGAAGCGATGAGGGGGAAAGCGAGAGGGAGGAAGAAGGGAG
TCAGGGGCGTTGGGTCCACACGAAGGAGCAAGCCGACCTGGTCCGACGTG
CTTTTGCGTCCGTGGACGTGGCGGAGGATTTCGCGCAAGAAAAGGCCGAG
GCCATCGCGGAGGAGGAGGCGGAGGCTGAAGCGGCGGCGGCCCAGAAAAA
AGGCGGGAAACATGGGGGCGCTCAGATGACTGCCATGCCAGGATGGGGCA
CTTGGGCAGGTCCTGGAGCTTCTCCGCCGCCCTTCCCGACCGTTTCTGCC
AACAAACGTGCTGTTCGTAAGATGGCAACAGGCGAGAAGAAAGAAAATGC
ATCCTCGGTGGCTCCTACGGGCAGAAAAGGGGTGATGGGTTGGGAGGGAG
GAGGAGGTAGGCAGGAAGTCGCCGGGGTGTCGGGGAGCACTACGGTGGAT
AAGGCATTGGTCAAGCCCCGCTTGGACCGAGCTCTACCCACCGTTCTGAT
CAACGAGCGGCGAGTGAAAAAAACTGCCGTTTTGAAAGTGGCGCAAGTGC
CGTACCCCTTCACTTCCCGCGAGCAATACGAACGCAGTTTGCGGCGACCG
ATTGGAAAAGAATGGAATACAACCACCGCGGTCCGGGAGGAAACGCGACC
AGCGGTAAAAGTACGCGCGGGCTTCTTGGTAGAGCCTATCAAATTACGTA
AGACCCATCGAGCCGTATTTCCAAAATCATGAAATTGAGAGGAGGAAGAA
GGAGAATTTAAGTAAAGGAAAATTCAGGTGCAAGACCGTTGCAATGTAGT
CTTTGAAGAGGAAAATATATATTACATGA
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Coding sequence (CDS) from alignment at CM002456.1:183389..184367-

>rna696 ID=rna696|Name=rna696|organism=Nannochloropsis gaditana|type=CDS|length=882bp|location=Sequence derived from alignment at CM002456.1:183389..184367- (Nannochloropsis gaditana)
ATGCAGGCGGAGGGCGGGGGTGAGGGCGGGGGTGAGGGCGGGGGTGAGGG
CGGGAAGGAGGTAAGTGGACAGGCGAAAGGCGAGGGGAAGAGGAAAAGGC
GAAGGACGAAGAGGGAATCGGACGGCGGCCGAGACAGGAGTGGACTAGAG
GCGGGGGATGGAAGCGATGAGGGGGAAAGCGAGAGGGAGGAAGAAGGGAG
TCAGGGGCGTTGGGTCCACACGAAGGAGCAAGCCGACCTGGTCCGACGTG
CTTTTGCGTCCGTGGACGTGGCGGAGGATTTCGCGCAAGAAAAGGCCGAG
GCCATCGCGGAGGAGGAGGCGGAGGCTGAAGCGGCGGCGGCCCAGAAAAA
AGGCGGGAAACATGGGGGCGCTCAGATGACTGCCATGCCAGGATGGGGCA
CTTGGGCAGGTCCTGGAGCTTCTCCGCCGCCCTTCCCGACCGTTTCTGCC
AACAAACGTGCTGTTCGTAAGATGGCAACAGGCGAGAAGAAAGAAAATGC
ATCCTCGGTGGCTCCTACGGGCAGAAAAGGGGTGATGGGTTGGGAGGGAG
GAGGAGGTAGGCAGGAAGTCGCCGGGGTGTCGGGGAGCACTACGGTGGAT
AAGGCATTGGTCAAGCCCCGCTTGGACCGAGCTCTACCCACCGTTCTGAT
CAACGAGCGGCGAGTGAAAAAAACTGCCGTTTTGAAAGTGGCGCAAGTGC
CGTACCCCTTCACTTCCCGCGAGCAATACGAACGCAGTTTGCGGCGACCG
ATTGGAAAAGAATGGAATACAACCACCGCGGTCCGGGAGGAAACGCGACC
AGCGGTAAAAGTACGCGCGGGCTTCTTGGTAGAGCCTATCAAATTACGTA
AGACCCATCGAGCCGTATTTCCAAAATCATGA
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Synonyms
Publications