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Properties
| Property Name | Value |
|---|
| Product | ubiquitin-conjugating enzyme e2 |
| Orig transcript id | gnl|cribi|Naga_100276g2.9384.mrna |
| Orig protein id | gnl|cribi|Naga_100276g2.9384 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:167984..169858 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna690 ID=rna690|Name=rna690|organism=Nannochloropsis gaditana|type=mRNA|length=1425bp
CACACTCAGACACGCAGCGCAACCAAAAACGCCGGAATTGAGTTCATAGC
CCCAAAAAAGTAATGTCCACTGCCGCCCGCCGCCGCCTGATGCGAGACTT
AAAACGGCTGCAAAGCGATCCACCACAGGGGGTGCAGGGCGCTCCGCTGG
ACAACAATATCATGACCTGGCAAGCAGTCATCTTCGGGCCAGATGACACG
CCATGGGAGGGAGGCACCTTCAAACTGCTTCTCGAGTTCACGGAAGACTA
TCCGAACAAGGCGCCTGCCGTGCGCTTCGTGACCAAAATGTTCCACCCGA
ATATCTACAACGACGGGCAGATCTGTCTAGATATACTGCAGAATCAGTGG
AGCCCCATCTACGACGTGTCGGCCATCCTCACCTCCATTCAATCCCTCCT
TTGTGACCCTAACCCTGCTTCCCCTGCCAACAGCGAGGCTTCCCGCCTGT
ACCAGGTACCGCCTCCCTCCCCCCCTTTCTCCCTCCCTCCGTCAATCCTG
TCCCTCTTTCTCCCGCCCCTCGCGGCTTGCTCGTCCTTTGCATTTTTCGT
CGCGCTTGGAGCTTCCGATCTGTATGCCTCCCTTTCACGTTGCTTCCGCC
CCGCAGCCTTTACATCTGTCGAGACGATTCCTTCCCTTTCTTCACACAAA
ATATGGCACCCGAATGTGTTTCCTGTGCCATGCATCCGTCCTGCAATGCC
ATTCACGCCTTACTTACTCGATTTCCCGGTCCACACTTTGGCAGGACAAC
CGCCGGGAGTACAACCGCCGGGTGAAGGAGGTGGTGGAGCAGAGCTGGAT
CGCTGACGACGACGATGACGATGAGGATGAAGATGAGGAGGGGGAAGAGG
AGGAGGGGGCGGAGAAAGAGAAAGGGGGGGCGGCGGGGGGTGGAGGTCAG
GCATGAAGAGAGGGATCGTGAGAGAGTTGACAAGGGCCGATTTTCCGATG
GATGTAGGGAGGTGATGAAGGAGTGAGGTGTGTGAATGGAGGAGTATGGA
AGCTGATAGTATTTGTGCGGGCGACAAAGGCCAGGAAGGTGTCGAGGGAC
TGAGGGAGAGAAGGAGGGTGCTTTCAGTCGCACGGTTCGTCCCCCTATAC
TTGCCTTCTGATCGTGCTGGTGGCAGATGCACTGAGTCATGGACCTCAGT
CACGTGTCCACGGTAGCAATGTCGTTTCTCAAATGCAGGGCGCAATGTCA
TGCGAAGATTTCGGGAAAGAGCCCCCCTTTAACCAGCCGGGGAGCTGGAT
GCGGAAAGCACTGCCTCCTTGTGGTGAATGTACATACAAACACAAGTAGG
AGACCGCGATAAAGCGATGGAAGCAAAGAGGGATATGGTTGGAAGAAAGG
GCTTGTGCCCGCATGTGTCGTTTCAAGTGCAACCTCCTTGTTATTCCTTC
ATGCGCAAGCAATCGCGACCTGCTA back to topprotein sequence of rna690 >rna690-protein ID=rna690-protein|Name=rna690|organism=Nannochloropsis gaditana|type=polypeptide|length=184bp
MSTAARRRLMRDLKRLQSDPPQGVQGAPLDNNIMTWQAVIFGPDDTPWEG
GTFKLLLEFTEDYPNKAPAVRFVTKMFHPNIYNDGQICLDILQNQWSPIY
DVSAILTSIQSLLCDPNPASPANSEASRLYQDNRREYNRRVKEVVEQSWI
ADDDDDDEDEDEEGEEEEGAEKEKGGAAGGGGQA back to topmRNA from alignment at CM002456.1:167984..169858+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna690 ID=rna690|Name=rna690|organism=Nannochloropsis gaditana|type=mRNA|length=1875bp|location=Sequence derived from alignment at CM002456.1:167984..169858+ (Nannochloropsis gaditana)
CACACTCAGACACGCAGCGCAACCAAAAACGCCGGAATTGAGTTCATAGC
CCCAAAAAAGTAATGTCCactgccgcccgccgccgcctgaTGCGAGACTT
AAAACGGCTGCAAAGCGATCCACCACAGGGGGTGCAGGGCGCTCCGCTGG
ACAACAATGTAGGTGTTGTGGATGAGGATTGCACGTGATTATGTGGAAGC
CCTCTGCGAGAGAGTGACCCGTCCCAATGAGATGAGGATTCAACTTGGAT
ACACGCTTAGCTTCCTGCATCCACTTCTCATCAGATCATGACCTGGCAAG
CAGTCATCTTCGGGCCAGATGACACgccatgggagggaggcaccttCAAA
CTGCTTCTCGAGTTCACGGAAGACTATCCGAACAAGGTAGGAGAAGTCTT
GGGACGGAGGCAAGGTCTCCAAGCACGTCCGCAGCTGCGAAATGCACATA
TTTTTTTGCACGCGATGACCTTTGCCAAATATGAAGAGTTCCCAATACTT
TTtccatctccctttccctcccgtgccTTGGTGGCTGTGAAGGCGCCTGC
CGTGCGCTTCGTGACCAAAATGTTCCACCCGAATATCTACAACGACGGGC
AGATCTGTCTAGGTAAGTCTTCgcggggaagcgagggagggttcTGTGTC
TGGGCGGAGTCAGTACGCGGCGTGGGGCGAGGCCAGTGTGGGAGTACGTA
ACGGCTTAGCGTGCGTCCGAATACACATATATTTaattatatatatatat
atcgtttctcaccctctcctcttccggtAGATATACTGCAGAATCAGTGG
AGCCCCATCTACGACGTGTCGGCCATCCTCACCTCCATTCAATCCCTCCT
TTGTGACCCTAACCCTGCTTCCCCTGCCAACAGCGAGGCTTCCCGCCTGT
ACCAGgtaccgcctccctccccccctttctccctccctccgtcaatcctg
tccctctttctcccgcccctcgcggCTTGCTCGTCCTTTGCATTTTTCGT
CGCGCTTGGAGCTTCCGATCTGTATGCCTCCCTTTCACGTTGCTTCCGCC
CCGCAGCCTTTACATCTGTCGAGAcgattccttccctttcttcacaCAAA
ATATGGCACCCGAATGTGTTTCCTGTGCCATGCATCCGTCCTGCAATGCC
ATTCACGCCTTACTTACTCGATTTCCCGGTCCACACTTTGGCAGGACAAC
CGCCGGGAGTACAACCGCcgggtgaaggaggtggtggagcagAGCTGGAT
CGctgacgacgacgatgacgatgaggatgaagatgaggagggggaagagg
aggagggggcggagaaagagaaagggggggcggcggggggtgGAGGTCAG
gcatgaagagagggatCGTGAGAGAGTTGACAAGGGCCGATTTTCCGATG
GATGTAGGGAGGTGATGAAGGAGTGAGGTGTGTGAATGGAGGAGTATGGA
AGCTGATAGTATTTGTGCGGGCGACAAAGGCCAGGAAGGTGTCGAGGGac
tgagggagagaaggagggtgctTTCAGTCGCACGGTTCGTCCCCCTATAC
TTGCCTTCTGATCGTGCTGGTGGCAGATGCACTGAGTCATGGACCTCAGT
CACGTGTCCACGGTAGCAATGTCGTTTCTCAAATGCAGGGCGCAATGTCA
TGCGAAGATTTCGGGAAAGAGCCCCCCTTTAACCAGCCGGGGAGCTGGAT
GCGGAAAGCACTGCCTCCTTGTGGTGAATGTACATACAAACACAAGTAGG
AGACCGCGATAAAGCGATGGAAGCAAAGAGGGATATGGTTGGAAGAAAGG
GCTTGTGCCCGCATGTGTCGTTTCAAGTGCAACCTCCTTGTTATTCCTTC
ATGCGCAAGCAATCGCGACCTGCTA back to topCoding sequence (CDS) from alignment at CM002456.1:167984..169858+ >rna690 ID=rna690|Name=rna690|organism=Nannochloropsis gaditana|type=CDS|length=2775bp|location=Sequence derived from alignment at CM002456.1:167984..169858+ (Nannochloropsis gaditana)
ATGTCCactgccgcccgccgccgcctgaTGCGAGACTTAAAACGGCTGCA
AAGCGATCCACCACAGGGGGTGCAGGGCGCTCCGCTGGACAACAATATCA
TGACCTGGCAAGCAGTCATCTTCGGGCCAGATGACACgccatgggaggga
ggcaccttCAAACTGCTTCTCGAGTTCACGGAAGACTATCCGAACAAGGC
GCCTGCCGTGCGCTTCGTGACCAAAATGTTCCACCCGAATATCTACAACG
ACGGGCAGATCTGTCTAGATATACTGCAGAATCAGTGGAGCCCCATCTAC
GACGTGTCGGCCATCCTCACCTCCATTCAATCCCTCCTTTGTGACCCTAA
CCCTGCTTCCCCTGCCAACAGCGAGGCTTCCCGCCTGTACCAGGACAACC
GCCGGGAGTACAACCGCcgggtgaaggaggtggtggagcagAGCTGGATC
Gctgacgacgacgatgacgatgaggatgaagatgaggagggggaagagga
ggagggggcggagaaagagaaagggggggcggcggggggtgGAGGTCAGg
catgaATGTCCactgccgcccgccgccgcctgaTGCGAGACTTAAAACGG
CTGCAAAGCGATCCACCACAGGGGGTGCAGGGCGCTCCGCTGGACAACAA
TATCATGACCTGGCAAGCAGTCATCTTCGGGCCAGATGACACgccatggg
agggaggcaccttCAAACTGCTTCTCGAGTTCACGGAAGACTATCCGAAC
AAGGCGCCTGCCGTGCGCTTCGTGACCAAAATGTTCCACCCGAATATCTA
CAACGACGGGCAGATCTGTCTAGATATACTGCAGAATCAGTGGAGCCCCA
TCTACGACGTGTCGGCCATCCTCACCTCCATTCAATCCCTCCTTTGTGAC
CCTAACCCTGCTTCCCCTGCCAACAGCGAGGCTTCCCGCCTGTACCAGGA
CAACCGCCGGGAGTACAACCGCcgggtgaaggaggtggtggagcagAGCT
GGATCGctgacgacgacgatgacgatgaggatgaagatgaggagggggaa
gaggaggagggggcggagaaagagaaagggggggcggcggggggtgGAGG
TCAGgcatgaATGTCCactgccgcccgccgccgcctgaTGCGAGACTTAA
AACGGCTGCAAAGCGATCCACCACAGGGGGTGCAGGGCGCTCCGCTGGAC
AACAATATCATGACCTGGCAAGCAGTCATCTTCGGGCCAGATGACACgcc
atgggagggaggcaccttCAAACTGCTTCTCGAGTTCACGGAAGACTATC
CGAACAAGGCGCCTGCCGTGCGCTTCGTGACCAAAATGTTCCACCCGAAT
ATCTACAACGACGGGCAGATCTGTCTAGATATACTGCAGAATCAGTGGAG
CCCCATCTACGACGTGTCGGCCATCCTCACCTCCATTCAATCCCTCCTTT
GTGACCCTAACCCTGCTTCCCCTGCCAACAGCGAGGCTTCCCGCCTGTAC
CAGGACAACCGCCGGGAGTACAACCGCcgggtgaaggaggtggtggagca
gAGCTGGATCGctgacgacgacgatgacgatgaggatgaagatgaggagg
gggaagaggaggagggggcggagaaagagaaagggggggcggcggggggt
gGAGGTCAGgcatgaATGTCCactgccgcccgccgccgcctgaTGCGAGA
CTTAAAACGGCTGCAAAGCGATCCACCACAGGGGGTGCAGGGCGCTCCGC
TGGACAACAATATCATGACCTGGCAAGCAGTCATCTTCGGGCCAGATGAC
ACgccatgggagggaggcaccttCAAACTGCTTCTCGAGTTCACGGAAGA
CTATCCGAACAAGGCGCCTGCCGTGCGCTTCGTGACCAAAATGTTCCACC
CGAATATCTACAACGACGGGCAGATCTGTCTAGATATACTGCAGAATCAG
TGGAGCCCCATCTACGACGTGTCGGCCATCCTCACCTCCATTCAATCCCT
CCTTTGTGACCCTAACCCTGCTTCCCCTGCCAACAGCGAGGCTTCCCGCC
TGTACCAGGACAACCGCCGGGAGTACAACCGCcgggtgaaggaggtggtg
gagcagAGCTGGATCGctgacgacgacgatgacgatgaggatgaagatga
ggagggggaagaggaggagggggcggagaaagagaaagggggggcggcgg
ggggtgGAGGTCAGgcatgaATGTCCactgccgcccgccgccgcctgaTG
CGAGACTTAAAACGGCTGCAAAGCGATCCACCACAGGGGGTGCAGGGCGC
TCCGCTGGACAACAATATCATGACCTGGCAAGCAGTCATCTTCGGGCCAG
ATGACACgccatgggagggaggcaccttCAAACTGCTTCTCGAGTTCACG
GAAGACTATCCGAACAAGGCGCCTGCCGTGCGCTTCGTGACCAAAATGTT
CCACCCGAATATCTACAACGACGGGCAGATCTGTCTAGATATACTGCAGA
ATCAGTGGAGCCCCATCTACGACGTGTCGGCCATCCTCACCTCCATTCAA
TCCCTCCTTTGTGACCCTAACCCTGCTTCCCCTGCCAACAGCGAGGCTTC
CCGCCTGTACCAGGACAACCGCCGGGAGTACAACCGCcgggtgaaggagg
tggtggagcagAGCTGGATCGctgacgacgacgatgacgatgaggatgaa
gatgaggagggggaagaggaggagggggcggagaaagagaaagggggggc
ggcggggggtgGAGGTCAGgcatga back to top
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