rna681, rna681 (mRNA) Nannochloropsis gaditana

Overview
Namerna681
Unique Namerna681
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length827
Alignment locationCM002456.1:153832..154934 +

Link to JBrowse

Properties
Property NameValue
Productsugar phosphatase of the had superfamily
Orig transcript idgnl|cribi|Naga_100276g9.9392.mrna
Orig protein idgnl|cribi|Naga_100276g9.9392
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:153832..154934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100276g9gene654Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna681rna681-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29991.1cds681Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna681 ID=rna681|Name=rna681|organism=Nannochloropsis gaditana|type=mRNA|length=827bp
ACTAACAGCTTATGTTTCAAAGAACATCCCTTAAAAGAGCGTTTTCGGGA
GGCCGCAGCCCTACTAACGTAGCGTTTCTTTGCCTGCTGACATCGACGCT
ACACCATGCGCGTGCGTTTGGCCCGCTCCCTCCCTCCTTCTGGCATCCTT
CGTCCATCGATCCAGCAGCCACAGAAATCAAACCTCAGAGCCATCCACCT
CCCTTCCGTACGTCGACGGAAAGCAGGCCAGAAGCATCGGTTCCACTGCC
CCCTCCTCGCACAGTGAAGGACATTTTAGCCCTCGATTTCGACGGGGTCC
TGTGCAACAGTGTCGAGGAGAGTAGTCAAGCCGCCTTCAGGAGCGTCAAG
AAAATGTGGCCACAATTGGCTACGTATTGTGCGCCTGTGGGGGGCGCTTC
CGCGAACGAATGCCCGGGGTGGCTGAGTGACAGCTTGCGACACCTCCGCC
CGCTGGTCGAGACGGGCTACGAGAATGTCCTTCTGGCACGTTTGTGCATG
GAGAAGTACCTGCAGGGGCAGGGGTCCACGCCCGACATTCACATCACAGA
TCTTGCCGGGAAATGGCAAACACACATGCGTTCCGCCTTGCTGCACCGTT
ACGGGGTGACGGCGCAGGAGTTAGTTGACGTGCGTGGGGGATGGGAGGGA
GGGAAGGAGGGGGGAGGGAGGGAGGGAGGAAGGGAGGGAAGAAGGGATAT
AGTTTTTATGCCGGCACATCCATGTGGTCTTTATCACCTTATCAATGGCT
TTAAAACCCTTCTTTCCGACAGCTGTATGGCTCGGTGCGGGATGAGTGGC
TGGGGTCGGACGCGGAGGGCTGGGTGA
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protein sequence of rna681

>rna681-protein ID=rna681-protein|Name=rna681|organism=Nannochloropsis gaditana|type=polypeptide|length=329bp
MKATSTQAMKAGTSIVRRSQGLREIVDQYDVFLIDQWGVMHDGHAAYPGA
VECMQSILAAGKYVILLSNSSKRKAGSLARLTDMGFQPEKYLDVITSGEL
TYLGLKPPRSPSYANIRGTNVLVFGSGDEDREYVESLGCRVSPVEAADFL
LARGPFTILDSPDPATPPQTFGPGRILHESAEFEAVAAKAIARGLPMIVS
NPDIVRPGGDNDPMPGLLGRAYEQKGGQVMYVGKPYPLVYQECRKRLVGL
KPAGGKADWRICAIGDSMWNDVKGAVDEGWASVLVTDGIHAESLGVRQGS
GEEVPGESLDFFLEGFAYRPSHTIPCFRW
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mRNA from alignment at CM002456.1:153832..154934+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna681 ID=rna681|Name=rna681|organism=Nannochloropsis gaditana|type=mRNA|length=1103bp|location=Sequence derived from alignment at CM002456.1:153832..154934+ (Nannochloropsis gaditana)
TTCTCGGTTTAACGAGGTCCCTCAGCACCCTTGCCACTGGTATAACATTT
CTCGCTTTgattccctcctcttgtaacgccttcctcgccccgggGTCACC
GGCTCGATACCATATGAAAGCAACATCAACTCAAGCTATGAAAGCCGGCA
CCAGCATTGTCCGCCGCAGTCAGGGGCTTCGTGAGATAGTCGACCAATAT
GATGTGTTTCTCATCGATCAGTGGGGTGTTATGCACGACGGTCACGCCGC
CTAtccgggggcggtggagtgCATGCAGTCAATTTTGGCCGCCGGCAAGT
ATGTTATTCTCCTGTCTAACTCCTCGAAACGCAAAGCCGGCTCGCTCGCG
CGTCTTACAGACATGGGTTTTCAGCCTGAAAAGTACTTGGACGTTATCAC
GTCGGGCGAGCTCACTTACCTTGGCCTCAAGCCACCACGTTCCCCTTCTT
ACGCAAACATCCGAGGCACAAATGTCCTTGTCTTCGGGTCCGGAGATGAA
GACCGGGAGTACGTGGAATCGTTGGGCTGTCGGGTTTCTccggtggaggc
ggccgactTTCTCTTGGCCCGCGGTCCGTTCACAATACTGGATTCACCCG
ACCCTGCCACGCCGCCTCAAACGTTTGGACCGGGTCGAATCCTGCACGAG
AGCGCAGAGTTTGAAGCGGTGGCCGCCAAAGCCATAGCGCGGGGGCTGCC
CATGATTGTGTCCAATCCCGACATCGTCCGACCTGGCGGCGACAACGACC
CCATGCCCGGGCTTCTCGGGCGTGCCTATGAGCAGAAGGGGGGCCAGGTC
ATGTATGTAGGCAAGCCATACCCTCTGGTGTATCAAGAGTGCCGAAAACG
TCTCGTAGGGCTGAAGCCggccgggggaaaggcggatTGGAGGATATGCG
CAATCGGAGACTCGATGTGGAACGACGTGAAGGGCGCAGTGGACGAAGGC
TGGGCATCTGTCCTGGTCACGGATGGGATCCACGCAGAATCTTTGGGGGT
ACGACAGGGCTCTGGGGAGGAAGTGCCGGGTGAAAGCCTAGATTTCTTCC
TGGAAGGCTTCGCATACCGGCCAAGCCACACAATACCGTGTTTTCGATGG
TAA
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Coding sequence (CDS) from alignment at CM002456.1:153832..154934+

>rna681 ID=rna681|Name=rna681|organism=Nannochloropsis gaditana|type=CDS|length=990bp|location=Sequence derived from alignment at CM002456.1:153832..154934+ (Nannochloropsis gaditana)
ATGAAAGCAACATCAACTCAAGCTATGAAAGCCGGCACCAGCATTGTCCG
CCGCAGTCAGGGGCTTCGTGAGATAGTCGACCAATATGATGTGTTTCTCA
TCGATCAGTGGGGTGTTATGCACGACGGTCACGCCGCCTAtccgggggcg
gtggagtgCATGCAGTCAATTTTGGCCGCCGGCAAGTATGTTATTCTCCT
GTCTAACTCCTCGAAACGCAAAGCCGGCTCGCTCGCGCGTCTTACAGACA
TGGGTTTTCAGCCTGAAAAGTACTTGGACGTTATCACGTCGGGCGAGCTC
ACTTACCTTGGCCTCAAGCCACCACGTTCCCCTTCTTACGCAAACATCCG
AGGCACAAATGTCCTTGTCTTCGGGTCCGGAGATGAAGACCGGGAGTACG
TGGAATCGTTGGGCTGTCGGGTTTCTccggtggaggcggccgactTTCTC
TTGGCCCGCGGTCCGTTCACAATACTGGATTCACCCGACCCTGCCACGCC
GCCTCAAACGTTTGGACCGGGTCGAATCCTGCACGAGAGCGCAGAGTTTG
AAGCGGTGGCCGCCAAAGCCATAGCGCGGGGGCTGCCCATGATTGTGTCC
AATCCCGACATCGTCCGACCTGGCGGCGACAACGACCCCATGCCCGGGCT
TCTCGGGCGTGCCTATGAGCAGAAGGGGGGCCAGGTCATGTATGTAGGCA
AGCCATACCCTCTGGTGTATCAAGAGTGCCGAAAACGTCTCGTAGGGCTG
AAGCCggccgggggaaaggcggatTGGAGGATATGCGCAATCGGAGACTC
GATGTGGAACGACGTGAAGGGCGCAGTGGACGAAGGCTGGGCATCTGTCC
TGGTCACGGATGGGATCCACGCAGAATCTTTGGGGGTACGACAGGGCTCT
GGGGAGGAAGTGCCGGGTGAAAGCCTAGATTTCTTCCTGGAAGGCTTCGC
ATACCGGCCAAGCCACACAATACCGTGTTTTCGATGGTAA
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Synonyms
Publications