EWM30006.1, cds667 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30006.1 vs. NCBI_GenBank
Match: gi|585112619|gb|EWM30006.1| (transcription elongation factor spt6 [Nannochloropsis gaditana]) HSP 1 Score: 1776.91 bits (4601), Expect = 0.000e+0 Identity = 866/866 (100.00%), Postives = 866/866 (100.00%), Query Frame = 0 Query: 1 MRRIKIEGLIQAVGFGHKRRTRVLDEIEREEEAEWMLEQLRLPYGGDRSKQREAVKKVLEFLQVDLYDVPFLWAYRRDYFAPHLPDRAHLWSITRLDDKWEELQRRKSFALARFERFSAGHHGYSSRKAMDQEARKAALQEVEARLKEAEAGVEEWKEKVKTLQDKEDTRMIGGDDEEEDEFAEESASLPQAKEALASFTDQKEAALNDLAALEAEMEAAEREKEKRESNGQWEELEPVEEEEEEELRRLCPDSYRTMLDASREEEGVRDLHEYLGVIGQETSRRAHRLAFDLYRKCRSLKGLRRFASLFSCPAPELGAALHASRTSGGDLDEQHRPLIPTPNMYPENAAAEYTTPSLPKYEEVLRAAKHMLAMELAHEPRLRACFRQIYRAEATLTTHPTIKGHNEITDQFHRLHGFQFINKKPLYEFLQPPSDSQPDLFLRIMQAEREGFITFTIDAPANTAAESTSWTPNGSSAWPSLLQTLEGLYMPYRTASLDTSLVDAWNEQRKDILSLTLSSHILPMLEAEVKREMARKAQEAVVAAAADALREVVNTGTYMPQYRNINCTLIPPFEDFQLRLSQRFPFELTPLSSSSLEVVAVFQASSRQEASFAVSVGRDGAVRDYVMLPPLRSGYDGDADQRDKLQKIIVEAKPAVVVVNAVVGGYEALRMKERLAKVVDNVARLYQHGELAAEDEEGWEPCEVLLIDDHLASVYARSPRVKKEFTDYHDNLRIAIGMARQMQDPLALVTLIYAAQDPRGGRFGGPGYQLSYLSLHDLQDQVNPHELSRRWEEVLVDAVNDVGVDLNKSISSLHLAGLLPFVSGLGFRKANALRAAIRNTHGSLVVSRAQLIEEGLLTPKVGQRGG 866 MRRIKIEGLIQAVGFGHKRRTRVLDEIEREEEAEWMLEQLRLPYGGDRSKQREAVKKVLEFLQVDLYDVPFLWAYRRDYFAPHLPDRAHLWSITRLDDKWEELQRRKSFALARFERFSAGHHGYSSRKAMDQEARKAALQEVEARLKEAEAGVEEWKEKVKTLQDKEDTRMIGGDDEEEDEFAEESASLPQAKEALASFTDQKEAALNDLAALEAEMEAAEREKEKRESNGQWEELEPVEEEEEEELRRLCPDSYRTMLDASREEEGVRDLHEYLGVIGQETSRRAHRLAFDLYRKCRSLKGLRRFASLFSCPAPELGAALHASRTSGGDLDEQHRPLIPTPNMYPENAAAEYTTPSLPKYEEVLRAAKHMLAMELAHEPRLRACFRQIYRAEATLTTHPTIKGHNEITDQFHRLHGFQFINKKPLYEFLQPPSDSQPDLFLRIMQAEREGFITFTIDAPANTAAESTSWTPNGSSAWPSLLQTLEGLYMPYRTASLDTSLVDAWNEQRKDILSLTLSSHILPMLEAEVKREMARKAQEAVVAAAADALREVVNTGTYMPQYRNINCTLIPPFEDFQLRLSQRFPFELTPLSSSSLEVVAVFQASSRQEASFAVSVGRDGAVRDYVMLPPLRSGYDGDADQRDKLQKIIVEAKPAVVVVNAVVGGYEALRMKERLAKVVDNVARLYQHGELAAEDEEGWEPCEVLLIDDHLASVYARSPRVKKEFTDYHDNLRIAIGMARQMQDPLALVTLIYAAQDPRGGRFGGPGYQLSYLSLHDLQDQVNPHELSRRWEEVLVDAVNDVGVDLNKSISSLHLAGLLPFVSGLGFRKANALRAAIRNTHGSLVVSRAQLIEEGLLTPKVGQRGG Sbjct: 1 MRRIKIEGLIQAVGFGHKRRTRVLDEIEREEEAEWMLEQLRLPYGGDRSKQREAVKKVLEFLQVDLYDVPFLWAYRRDYFAPHLPDRAHLWSITRLDDKWEELQRRKSFALARFERFSAGHHGYSSRKAMDQEARKAALQEVEARLKEAEAGVEEWKEKVKTLQDKEDTRMIGGDDEEEDEFAEESASLPQAKEALASFTDQKEAALNDLAALEAEMEAAEREKEKRESNGQWEELEPVEEEEEEELRRLCPDSYRTMLDASREEEGVRDLHEYLGVIGQETSRRAHRLAFDLYRKCRSLKGLRRFASLFSCPAPELGAALHASRTSGGDLDEQHRPLIPTPNMYPENAAAEYTTPSLPKYEEVLRAAKHMLAMELAHEPRLRACFRQIYRAEATLTTHPTIKGHNEITDQFHRLHGFQFINKKPLYEFLQPPSDSQPDLFLRIMQAEREGFITFTIDAPANTAAESTSWTPNGSSAWPSLLQTLEGLYMPYRTASLDTSLVDAWNEQRKDILSLTLSSHILPMLEAEVKREMARKAQEAVVAAAADALREVVNTGTYMPQYRNINCTLIPPFEDFQLRLSQRFPFELTPLSSSSLEVVAVFQASSRQEASFAVSVGRDGAVRDYVMLPPLRSGYDGDADQRDKLQKIIVEAKPAVVVVNAVVGGYEALRMKERLAKVVDNVARLYQHGELAAEDEEGWEPCEVLLIDDHLASVYARSPRVKKEFTDYHDNLRIAIGMARQMQDPLALVTLIYAAQDPRGGRFGGPGYQLSYLSLHDLQDQVNPHELSRRWEEVLVDAVNDVGVDLNKSISSLHLAGLLPFVSGLGFRKANALRAAIRNTHGSLVVSRAQLIEEGLLTPKVGQRGG 866
BLAST of EWM30006.1 vs. NCBI_GenBank
Match: gi|553180884|ref|XP_005853476.1| (transcription elongation factor spt6 [Nannochloropsis gaditana CCMP526] >gi|422295585|gb|EKU22884.1| transcription elongation factor spt6 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 1491.09 bits (3859), Expect = 0.000e+0 Identity = 743/792 (93.81%), Postives = 744/792 (93.94%), Query Frame = 0 Query: 96 LDDKWEELQRRKSFALARFERFSAGHHGYSSRKAMDQEARKAALQEVEARLKEAEAGVEEWKEKVKTLQDKEDTRMIGGDDEEEDEFAEESASLPQAKEALASFTDQKEAALNDLAALEAEMEAAEREKEKRESNGQWEELEPVEEEEEEELRRLCPDSYRTMLDASREEEGVRDLHEYLGVIGQETSRRAHRLAFDLYRKCRSLKGLRRFASLFSCPAPELGAALHASRTSGGDLDEQHRPLIPTPNMYPENAAAEYTTPSLPKYEEVLRAAKHMLAMELAHEPRLRACFRQIYRAEATLTTHPTIKGHNEITDQFHRLHGFQFINKKPLYEFLQPPSDSQPDLFLRIMQAEREGFITFTIDAPANTAAESTSWTPNGSSAWPSLLQTLEGLYMPYRTASLDTSLVDAWNEQRKDILSLTLSSHILPMLEAEVKREMARKAQEAVVAAAADALREVVNTGTYMPQYRNINCTLIPPFEDFQLRLSQRFPFELTPLSSSSLEVVAVFQASSRQEASFAVSVGRDGAVRDYVMLPPLRSGYDGDADQRDKLQKIIVEAKPAVVVVNAVVGGYEALRMKERLAKVVDNVARLYQHGELAAEDEEGWEPCEVLLIDDHLASVYARSPRVKKEFTDYHDNLRIAIGMARQM--------------------------QDPLALVTLIYAAQDPRGGRFGGPGYQLSYLSLHDLQDQVNPHELSRRWEEVLVDAVNDVGVDLNKSISSLHLAGLLPFVSGLGFRKANALRAAIRNTHGSLVVSRAQLIEEGLLTPKV 861 LDDKWEELQRRKSFALARFERFSAGHHGYSSRKAMDQEAR AALQEVEARLKEAEAGVEEWKEK EEDEFAEESASLPQAKEALASFTDQKEAAL DLAALEAEMEAAEREKEKRESNGQWEELEPVEEEEEEELRRLCPDSYRTMLDASREEEGVRDLHEYLGVIGQETSRRAHRLAFDLYRKCRSLKGLRRFASLFSCPAPELGAALHAS TSGGDLDEQHRPLIPTPNMYPENAAAEYTTPSLPKYEEVLRAAKHMLAMELAHEPRLRACFRQIYRAEATLTTHPT+KGHNEITDQFHRLHGFQFINKKPLYEFLQPPSDSQPDLFLRIMQAEREGFITFTIDAPANTAAESTSWTPNGSSAWPSLLQTLEGLYMPYRTASLDTSLVDAWNEQRKDILSLTLSSHILPMLEAEVKREMARKAQEAVVAAAADALREVVNTGTYMPQYRNINC LIPPFEDFQLRLSQRFPFELTPLSSSSLEVVAVFQASSRQEASFAVSVGRDGAVRDYVMLPPLRSGYDGDADQRDKLQKIIVEAKPAVVVVNAVVGGYEALRMKERLAKVVDNVARLYQHGELAAEDEEGWEPCEVLLIDDHLASVYARSPRVKKEFTDYHDNLRIAIGMARQM QDPLALVTLIYAAQDPRGGRFGGPGYQLSYLSLHDLQDQVNPHELSRRWEEVLVDAVNDVGVDLNKSISSLHLAGLLPFVSGLGFRKANALRAAIRNTHGSLVVSRAQLIEEGLLTPKV Sbjct: 3 LDDKWEELQRRKSFALARFERFSAGHHGYSSRKAMDQEARIAALQEVEARLKEAEAGVEEWKEK------------------EEDEFAEESASLPQAKEALASFTDQKEAALKDLAALEAEMEAAEREKEKRESNGQWEELEPVEEEEEEELRRLCPDSYRTMLDASREEEGVRDLHEYLGVIGQETSRRAHRLAFDLYRKCRSLKGLRRFASLFSCPAPELGAALHASSTSGGDLDEQHRPLIPTPNMYPENAAAEYTTPSLPKYEEVLRAAKHMLAMELAHEPRLRACFRQIYRAEATLTTHPTLKGHNEITDQFHRLHGFQFINKKPLYEFLQPPSDSQPDLFLRIMQAEREGFITFTIDAPANTAAESTSWTPNGSSAWPSLLQTLEGLYMPYRTASLDTSLVDAWNEQRKDILSLTLSSHILPMLEAEVKREMARKAQEAVVAAAADALREVVNTGTYMPQYRNINCALIPPFEDFQLRLSQRFPFELTPLSSSSLEVVAVFQASSRQEASFAVSVGRDGAVRDYVMLPPLRSGYDGDADQRDKLQKIIVEAKPAVVVVNAVVGGYEALRMKERLAKVVDNVARLYQHGELAAEDEEGWEPCEVLLIDDHLASVYARSPRVKKEFTDYHDNLRIAIGMARQMQVRIPAPPFPSYLPPFTCLSPFFYPLQDPLALVTLIYAAQDPRGGRFGGPGYQLSYLSLHDLQDQVNPHELSRRWEEVLVDAVNDVGVDLNKSISSLHLAGLLPFVSGLGFRKANALRAAIRNTHGSLVVSRAQLIEEGLLTPKV 776
BLAST of EWM30006.1 vs. NCBI_GenBank
Match: gi|299473222|emb|CBN78798.1| (GTB1; RNA binding / hydrolase, acting on ester bonds, also similar to transcription elogantion facto [Ectocarpus siliculosus]) HSP 1 Score: 240.736 bits (613), Expect = 2.187e-62 Identity = 200/663 (30.17%), Postives = 309/663 (46.61%), Query Frame = 0 Query: 244 EEELRRLCPDSYRTMLDASREEEGVRDLHEYLGVIG--QETSRRAHRLAFD-----------------LYRKCRSLKGLRRFASLFSCPAPELGAALHASRTSGGDLDEQHRPLIPTPNMYPENAAAEYT----TPSLPKYEEVLRAAKHMLAMELAHEPRLRACFRQIYRAEATLTTHPTIKGHNEITDQFHRLHGFQFINKKPLYEFLQPPSDSQPDLFLRIMQAEREGFITFTIDAPANTAAESTSWTPNGSSAWP------SLLQTLEGLYMPYRTASLDTSLVDAWNEQRKDILSLTLSSHILPMLEAEVKREMARKAQEAVVAAAADALREVVNTGTYMPQYRNINCTLIPPFEDFQLRLSQRFPFELTPLSSSSLEVVAVFQASSRQEASFAVSVGRDGAVRDYVMLPPLRSGYDGDADQR-DKLQKIIVEAKPAVVVVNAVVGGYEALRMK-----------ERLAKVVDNVARLYQH----GELAAEDEEGWEPCEVLLIDDHLASVYARSPRVKKEFTDYHDNLRIAIGMARQMQDPLALVTLIYAAQDPRGGRFGGPGYQLSYLSLHDLQDQVNPHELSRRWEEVLVDAVNDVGVDLNKSISSLHLAGLLPFVSGLGFRKANALRAAIRNTHGSLVVSRAQLIEEGLLTPKV 861 EEE D Y M++ S+EE ++D+ +YL ++ ET + + LYR R GLR A+ FS A +LG + + +++ P +PTP E A++ TP E +L+ +H+LA E+A EPR++A R YR A ++T PT KG EI D FH L+G ++++K + EFL S +L+I + + EG +T+ I P N S NG + L L+ Y P + +++ W+ QR +L L H++P LE EV E+ ++ AVV A+ L + ++ P+E L + Q+ + L + + VV +F +S +E S+A ++ G+V D++ +P R D R KL+ I +P VV V+ G M E V+ + R YQ + E+EE W+ C + + D +A V+ARS R +KEF D+ N R A+ +AR +QDPL ++ D G FG +++ L LH LQDQV P +L + W ++DAV+ VGVD+N + H G+L FV GLG RKA LR + G +V SR L+ +L V Sbjct: 636 EEEASLFPSDQYSYMIN-SQEEVELKDMQDYLALVSLMGETDEKLRNATGNGNGDRRRPRRAGRADDNLYRAARQ-AGLRGLANKFSITAAQLGEVVTG-------ISQRYFP-VPTPPEAVELVASDMKGAEDTPLFSSSESILQGVRHILAREIALEPRVKAKCRATYRRYALVSTTPTAKGKEEI-DAFHPLYGLHYLDRKAISEFLSTHG-SDRTQWLQIEKGKAEGLLTYVIHPPDNKV---QSLDENGEMMTTFELNKKAFLDLLKPTYNP--EGGVSSAVKQGWDHQRNLVLHEALVEHLIPALETEVVFELKAASRAAVVEEASTCL---------------ASRLMVGPYERDDLNVFQKVTKADSSLKNDQVRVVGIFVSSDSREESWAAAIDPSGSVLDHLQIPRSR-------DLRAKKLKAFIKSNRPHVVCVSTSAGQASRYMMDTLVDRRSGQNGEPKTGVLADAHREYQRERGDYDDQDEEEEVWKQCSLAPVKDDVACVFARSTRGEKEFADFSVNQRAAVALARYLQDPLVEFAGMWTTMDS-SGNFG---HEMFSLRLHALQDQVPPQQLLKVWTHRMMDAVSAVGVDINHAAEHEHAVGVLQFVPGLGPRKAFKLRERLGTVLGGVVPSRKALLSSQVLKSLV 1255
BLAST of EWM30006.1 vs. NCBI_GenBank
Match: gi|1210528215|dbj|GAX13330.1| (transcription elongation factor SPT6 [Fistulifera solaris]) HSP 1 Score: 220.705 bits (561), Expect = 9.210e-56 Identity = 248/953 (26.02%), Postives = 401/953 (42.08%), Query Frame = 0 Query: 32 EAEWMLEQLRLP----------YGGDRSKQREAVKKVLEFLQVDLYDVPFLWAYRRDYFAPHLPDRAHLWSITRLDDKWEELQRRKSFALARFERFSAGHHGYSSRKAMDQEARKAALQEVEARLKEAEAGVEEWKEKVKTLQDK------------EDTRMIGGDDEEEDEFAEESASLPQAKEALASFTDQKEAALNDLAALEAEMEAAEREKEKRESNGQWEELEPVEEEEEEELRRLCPDSYRTMLDASREEEGVRDLHEYLGVI--GQETSRRAHRLAF------------------DLYRKCRSLKGLRRFASLFSCPAPELGAALHASRTSG---------GDLDEQHRPL---IPT-PNMYPENAAAEYTTPS------------LPKYEEVLRAAKHMLAMELAHEPRLRACFRQIYRAEATLTTHPTIKGHNEITDQFHRLHGFQFINKKPLYE--------------FLQPPSDSQPD------------LFLRIMQAEREGFITFTIDAPANTAAES-----TSWTPNGSSAWPSLLQTLEGLYMPYRTASLDTSLVDAWNEQRKDILSLTLSSHILPMLEAEVKREMARKAQEAVVAAAADALREVVNTGTYMPQYRNINCTLIPPFEDFQLRLSQRFPFELTPLSSSSLEVVAVFQASSRQEASFAVSVGRDGAVRDYVMLPPLRSGYDGDADQ-RDKLQKIIVEAKPAVVVVNAVVGGYEALRMKERLAKVVDNVARLYQHGELAAEDEEG------------------------WEPCEVLLIDDHLASVYARSPRVKKEFTDYHDNLRIAIGMARQMQDPLALVTLIYAAQDPRGGRFGGPGYQLSYLSLHDLQDQVNPHELSRRWEEVLVDAVNDVGVDLNKSISSLHLAGLLPFVSGLGFRKANALRAAIRNTHGSLVVSRAQLIEEGLLTPKV 861 +AEW+ E R+P ++++ A+ L F+ D + FL YRRDY R L+ I D +W + + F +A S K +D E ++++A LK AE + + ++ +Q + ++ DDEEE + E L Q E + S EA +A L+++++ AE + G E + + + ++ L + PD Y L ++ + D++ YL +I G + R+ A D YR C S +GLR F +G L S G G ++ PL PT + P + A E + + + LR +++ A ELA EPR+R R+IYR A LTT PT KG + + D FH +G I KP+ E L P + D +L +++AE+ G ++ + P + T N + LL LE +Y+P LD D +NE+R+ ++ L++ +LP EAE+KRE+ + + V AAA LR++ G Y P + RF + + L V V +S +EA++ +V G DY+ +P SG D+ + R+K+ +++ +PA V+V GG+E+ + ++ +V+ + + ++ EDE+ W C V LIDD ++ ++ RS R KKEF D+ NL+ AI +AR +DPLA + ++ G G ++ YL++H Q + L R +E L D V ++GVDLNK + HL GLL FV GLG RKA L + G+ + R L+E+ +L P V Sbjct: 386 KAEWIAE--RIPKICAEITNSKSEDEKTRVLNAIANALRFMHRDKLEPSFLKHYRRDYIQSAAV-RESLYDIMDEDSEWHNMLNARKKVEDLFAEINATMEVEQS-KNLDVEL----TEKLQADLKTAEEQLNDTAKQETQVQHELEALGAADDDDDDELFGDDNDDEEEKK--RERTRLTQHLETIQSLL---EARAEKVAQLQSQLQLAEAKNRSLSDGGSIERI--LRKTNKKSLWHV-PD-YTHYLLGLQDTRHIVDMNVYLTLIKEGNDAIRKKELPALVLKEGMSERRKRSRRFDRDFYRTCVS-EGLRAVCYRFLLSPSRVGIKLEDSVKYGKFDFSKPLPGAEEQSVDPLQWVAPTIADKSPSDFANELIGSGELVMLSSLDPADMSESNDPLRGCRYVAATELAAEPRVRRTLREIYRKHAVLTTRPTKKGLD-VIDAFHDYYGIHLIFAKPVKEHFPVDADEAQRRKDILGPSEQKEYDNEMTERQRRSCLQYLNVLKAEQTGLVSLHVHLPLKEKRDDWYSIDTDQLLNTNQNLKPLLDELEKVYLP-----LD---ADEFNEERRKVVHTALTNFLLPQFEAELKRELRDTSVKIGVEAAASNLRKMAMDGPYRPAA--------------IVHTENRFLY-----PTGDLPFVGVSCSSDPKEATYLAAVTDRGESSDYLAIP---SGVKVDSPKMREKVIMFLIQTRPAAVMV-GTSGGFESRLFQRKMVDLVNEAVQRWNKRDIQGEDEDDDAFLSRQDQFRQFQTNIHDDDQDEWT-CNVELIDDSVSQLFGRSVRSKKEFPDHAMNLKCAISVARYAKDPLAELAYAWSV----ASDSGNFGTEMLYLNIHPSQQLLPRTFLLRHYERALCDIVAEIGVDLNKCTALDHLKGLLTFVPGLGPRKAANLNHMLSQMGGA-IAKRRDLLEKRVLGPVV 1282
BLAST of EWM30006.1 vs. NCBI_GenBank
Match: gi|224007547|ref|XP_002292733.1| (SUPT6H,-like protein to suppressor of ty 6 [Thalassiosira pseudonana CCMP1335] >gi|220971595|gb|EED89929.1| SUPT6H,-like protein to suppressor of ty 6 [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 218.779 bits (556), Expect = 3.013e-55 Identity = 176/586 (30.03%), Postives = 293/586 (50.00%), Query Frame = 0 Query: 278 IGQETSRRAHRLAFDLYRKCRSLKGLRRFASLFSCPAPELGAALHASRTSGGDLDEQHRPLIPTPNMYPENAAAEYTTPSLPKYEEVLRAAKHMLAMELAHEPRLRACFRQIYRAEATLTTHPTIKGHNEITDQFHRLHGFQFINKKPLYEFLQPPSDSQPDLFLRIMQAEREGFITFTIDAP-ANTAAESTSWTPNGSSAWPSLLQTLEGLYMPYRTASLDTSLVDAWNEQRKDILSLTLSSHILPMLEAEVKREMARKAQEAVVAAAADALREVVNTGTYMPQYRNINCTLIPPFEDFQLRLSQRFPFELTPLSSSSLEVVAVFQASSRQEASFAVSVGRDGAVRDYVMLPPLRSGYDGDADQRDKLQKIIVEAKPAVVVVNAVVGGYEALRMKERLAKVVDNVARLYQHGELAAEDEEGWEPCEVLLIDDHLASVYARSPRVKKEFTDYHDNLRIAIGMARQMQDPLALVTLIYA-AQDPRGGRFGGPGYQLSYLSLHDLQDQVNPHELSRRWEEVLVDAVNDVGVDLNKSISSLHLAGLLPFVSGLGFRKANALRAAIRNTHGSLVVSRAQLIEEGLLTPKV 861 + ++ +R+ R +D YR C +GLR F P +G L + T L+ + E+AA + P+ + LR +++ AMELAHEPR+R R IYRAEA +TT PT KG I D FH +G + K + + P + Q +L +++AER G IT + P N ++ + P L++ LE +YMP A+ DT + WN++R+ IL + L +++LP EAE +R++ + V AAA L+ + G Y P Y I P +DF +V V A+ ++ +F ++ +G +D++ +P S +A R+K+ +++ +P++VVV+ E +D+ + H + +D+ W+ C V ++DD++A ++ RS R KKEF D NL++AI AR ++PL + ++ A D G F G ++ ++++H LQ + L R++E VL + +VGVD+N + + H+ G+L FV GLG RKAN L+ ++ G +V SR L+ + LL P + Sbjct: 272 VNKDKVKRSRRFDWDYYRTCVG-EGLRGICYKFVLPPFRVGIKLEETLTKSTGFTYDRLVLLSSAR---EDAAWDDN----PEMMDPLRGCRYVAAMELAHEPRIRRHLRDIYRAEACITTRPTAKGLQNI-DAFHEYYGLHLLRNKHVKDHF-PTACIQ---YLNLLKAERSGDITVQVHLPFVNDEMDTGT---------PWLMEALERVYMP---ANGDT---EEWNDERRKILKMALVNYLLPHFEAETRRDLRDASTRIGVEAAAQNLQALAMEGPYRPSYMLGENRFIVPTDDFP--------------------IVGVCSATDPKDGTFLAAIDENGESQDHLAIPGGTSITSDNA--REKVITFLMQTRPSLVVVD-----------DEDFEARMDSFRMM--HPNVDDDDDVVWK-CNVDIVDDNVAQLFGRSVRGKKEFPDQPVNLKVAIATARWAKNPLCELAYTWSTASD--AGVF---GTEMLFMNIHPLQRLLPKPLLLRQYERVLCNVTAEVGVDINGACTYDHMHGMLSFVPGLGPRKANNLKQSVARI-GGVVSSRKSLLAKRLLGPII 787
BLAST of EWM30006.1 vs. NCBI_GenBank
Match: gi|397575829|gb|EJK49909.1| (hypothetical protein THAOC_31164, partial [Thalassiosira oceanica]) HSP 1 Score: 192.971 bits (489), Expect = 5.607e-47 Identity = 167/575 (29.04%), Postives = 273/575 (47.48%), Query Frame = 0 Query: 351 AEYTTPSLPKYEEVLRAAKHMLAMELAHEPRLRACFRQIYRAEATLTTHPTIKGHNEITDQFHRLHGFQFINKKPLYEFLQPPSD-------------------------SQPDLFLR---IMQAEREGFITFTIDAPANTAA---ESTSWTPNGSSAW-------PSLLQTLEGLYMPYRTASLDTSLVDAWNEQRKDILSLTLSSHILPMLEAEVKREMARKAQEAVVAAAADALREVVNTGTYMPQYRNINCTLIPPFEDFQLRLSQRFPFELTPLSSSSLEVVAVFQASSRQEASFAVSVGRDGAVRDYVMLPPLRSGYDGDADQRDKLQKIIVEAKPAVVVVNAVVGGYEALRMKERLAKVV--------------------------DNVARLYQHGELAAEDEEGWEPCEVLLIDDHLASVYARSPRVKKEFTDYHDNLRIAIGMARQMQDPLALVTLIYAAQDPRGGRFGGPGYQLSYLSLHDLQDQVNPHELSRRWEEVLVDAVNDVGVDLNKSISSLHLAGLLPFVSGLGFRKANALRAAIRNTHGSLVVSRAQLIEEGLLTPKV 861 A++ P P + LRAA+++ +ME+AHEPR+R R +YR A L+T PT +G I D FH +G + KP+ + PSD ++ D LR +++A+R G I+ + P ++ + W SS ++ LE Y+P A DT D WNE+R+ +L L +H+LP E+E +R++ A +A VAAA ++LR + G Y P + + P D + VV V +S +E ++ +V G V D+V +P G + D+ R+++ ++ ++P VVV + G + RLA++V ++ R++ +L +++E W+ C V ++DD++A ++ RS R KKEF ++ NL++A+ AR +DPL + ++A G F G ++ YL++H LQ V L R +E VL DVGVD+N + + H+ GLL FV GLG RKAN LR + G +V +R ++ + +L P V Sbjct: 53 ADWDRPD-PDAVDPLRAARYVASMEVAHEPRVRRTLRDMYRQSAVLSTRPTARGAASI-DAFHEFYGLHLLRDKPVRDHF--PSDPAELERKRQRLDAEEAAELERNLRKAESDSCLRYLSLLRADRSGDISLQVHLPYVQSSFDDPNVEWHKRPSSELVRERQNIKPMMDVLERCYLP---AGGDT---DEWNEERRRVLRSALLNHLLPQFESETRRDLRDAAVKAGVAAAGESLRSMATEGPYRPSHYLGENRFVRPTGD--------------------IPVVGVCSSSDAREGTYLAAVTGSGEVADHVAVP---GGTNVDS-HRERIVTFLMTSRPEAVVVGSSGGVGSRATAR-RLAEIVQVATEKWNNRFVQAADEDDEDFEARMESFRRMHSGMDLDDDEDEVWK-CNVDIVDDNVAQLFGRSVRGKKEFPEFPTNLKVAVSCARYAKDPLGELAYTWSAASD-AGVF---GTEMLYLNIHPLQRLVPRTLLLREYERVLCGVTADVGVDVNAACAHDHVHGLLTFVPGLGPRKANNLRQSAERI-GGVVSNRKAVLAKRMLGPVV 586
BLAST of EWM30006.1 vs. NCBI_GenBank
Match: gi|1078799645|ref|XP_018497225.1| (PREDICTED: LOW QUALITY PROTEIN: transcription elongation factor SPT6-like, partial [Galendromus occidentalis]) HSP 1 Score: 192.586 bits (488), Expect = 9.506e-47 Identity = 165/578 (28.55%), Postives = 255/578 (44.12%), Query Frame = 0 Query: 292 DLYRKCRSLKGLRRFASLFSCPAPELGAALHASRTSGGDLDEQHRPLIPTPNMYPENAAAEYTTPSLPKYEEVLRAAKHMLAMELAHEPRLRACFRQIYRAEATLTTHPTIKGHNEITDQFHRLHGFQFINKKPLYEFLQPPSDSQPDLFLRIMQAEREGFITFTIDAPANTAAESTSWTPNGSSAWPSLLQTLEGLYMPYRTASLDTSLVDAWNEQRKDILSLTLSSHILPMLEAEVKREMARKAQEAVVAAAADALREVVNTGTYMPQYRNINCTLIPPFEDFQLRLSQRFPFELTPLSSSSLEVVAVFQASSRQEASFAVSVGRDGAVRDYVMLPPL--------RSGYDGDADQRDKLQKIIVEAKPAVVVVNAVVGGYEALRMKERLAKVVDNVARLYQHGELAAEDEEGWEPCEVLLIDDHLASVYARSPRVKKEFTDYHDNLRIAIGMARQMQDPLALVTLIYAAQDPRGGRFGGPGYQLSYLSLHDLQDQVNPHELSRRWEEVLVDAVNDVGVDLNKSISSLHLAGLLPFVSGLGFRKANALRAAIRNTHGSLVVSRAQLIEEGLLTPKV 861 D + CR + GL A F + G L + Q ++ P + P AAAEY L EVL A++M+A E+A +P +R C R+ + A L PT KG EI D+ H + F+++ KP+ Q D +L++ AE E + +I + AE NG+ A S ++ L Y + V WN QR++ L+ L+ + P E E+K + R+A + V+ + + + Y P I EDF R + + A+ + +F + DG V DY+ L + S KL+K I E KP VV++A EAL +KE + +V+ + D++ + +V+L+D LA VYA S R ++EF +Y L+ A+ +AR+MQDPL + + GP ++ L H LQD V E L++ N+VGVD+N+ + H + LL FVSGLG RKA+A+ ++ +H L SR L+ L PKV Sbjct: 541 DGFAVCREM-GLSALAKKFGLTPQQFGENLRDNY--------QRHEVVQFP-VQPLEAAAEYVNERLKTPLEVLNGARYMVACEIARDPTVRRCVRETFFERAKLCVAPTKKGSKEI-DESHACYTFKYLKNKPVRSL-------QADQYLKLSMAEEEKLLKISIRMDGDGCAE------NGTYA--SEVRQL------YHRDEFSKN-VQEWNSQREEALNHALTKMLYPTFEKELKLRLLREAYDNVLRSVSKKFYNWLKVAPYNPP------DWIQEEEDFDTR--------------EGVRIFAIAYQNDWNVPAFGALINGDGEVTDYLRLENILKRKNAWRESERAAKISDLAKLKKFIAEKKPHCVVISA--ESREALSIKEDVEQVIKELG-----------DDDQFPAVQVMLLDCGLALVYANSKRAEQEFREYPPLLKQAVSLARRMQDPLIEFS-----------QLCGPDEEILCLKYHPLQDNVPKEEFQWALALELINRTNEVGVDINRCMEQSHTSELLQFVSGLGPRKAHAMIKTLKQSHSKL-DSRTSLVTTLKLGPKV 1040
BLAST of EWM30006.1 vs. NCBI_GenBank
Match: gi|1078808405|ref|XP_018496136.1| (PREDICTED: LOW QUALITY PROTEIN: transcription elongation factor SPT6-like, partial [Galendromus occidentalis]) HSP 1 Score: 192.586 bits (488), Expect = 1.046e-46 Identity = 165/578 (28.55%), Postives = 255/578 (44.12%), Query Frame = 0 Query: 292 DLYRKCRSLKGLRRFASLFSCPAPELGAALHASRTSGGDLDEQHRPLIPTPNMYPENAAAEYTTPSLPKYEEVLRAAKHMLAMELAHEPRLRACFRQIYRAEATLTTHPTIKGHNEITDQFHRLHGFQFINKKPLYEFLQPPSDSQPDLFLRIMQAEREGFITFTIDAPANTAAESTSWTPNGSSAWPSLLQTLEGLYMPYRTASLDTSLVDAWNEQRKDILSLTLSSHILPMLEAEVKREMARKAQEAVVAAAADALREVVNTGTYMPQYRNINCTLIPPFEDFQLRLSQRFPFELTPLSSSSLEVVAVFQASSRQEASFAVSVGRDGAVRDYVMLPPL--------RSGYDGDADQRDKLQKIIVEAKPAVVVVNAVVGGYEALRMKERLAKVVDNVARLYQHGELAAEDEEGWEPCEVLLIDDHLASVYARSPRVKKEFTDYHDNLRIAIGMARQMQDPLALVTLIYAAQDPRGGRFGGPGYQLSYLSLHDLQDQVNPHELSRRWEEVLVDAVNDVGVDLNKSISSLHLAGLLPFVSGLGFRKANALRAAIRNTHGSLVVSRAQLIEEGLLTPKV 861 D + CR + GL A F + G L + Q ++ P + P AAAEY L EVL A++M+A E+A +P +R C R+ + A L PT KG EI D+ H + F+++ KP+ Q D +L++ AE E + +I + AE NG+ A S ++ L Y + V WN QR++ L+ L+ + P E E+K + R+A + V+ + + + Y P I EDF R + + A+ + +F + DG V DY+ L + S KL+K I E KP VV++A EAL +KE + +V+ + D++ + +V+L+D LA VYA S R ++EF +Y L+ A+ +AR+MQDPL + + GP ++ L H LQD V E L++ N+VGVD+N+ + H + LL FVSGLG RKA+A+ ++ +H L SR L+ L PKV Sbjct: 548 DGFAVCREM-GLSALAKKFGLTPQQFGENLRDNY--------QRHEVVQFP-VQPLEAAAEYVNERLKTPLEVLNGARYMVACEIARDPTVRRCVRETFFERAKLCVAPTKKGSKEI-DESHACYTFKYLKNKPVRSL-------QADQYLKLSMAEEEKLLKISIRMDGDGCAE------NGTYA--SEVRQL------YHRDEFSKN-VQEWNSQREEALNHALTKMLYPTFEKELKLRLLREAYDNVLRSVSKKFYNWLKVAPYNPP------DWIQEEEDFDTR--------------EGVRIFAIAYQNDWNVPAFGALINGDGEVTDYLRLENILKRKNAWRESERAAKISDLAKLKKFIAEKKPHCVVISA--ESREALSIKEDVEQVIKELG-----------DDDQFPAVQVMLLDCGLALVYANSKRAEQEFREYPPLLKQAVSLARRMQDPLIEFS-----------QLCGPDEEILCLKYHPLQDNVPKEEFQWALALELINRTNEVGVDINRCMEQSHTSELLQFVSGLGPRKAHAMIKTLKQSHSKL-DSRTSLVTTLKLGPKV 1047
BLAST of EWM30006.1 vs. NCBI_GenBank
Match: gi|970634948|gb|KUF79982.1| (Transcription elongation factor SPT6 [Phytophthora nicotianae]) HSP 1 Score: 190.66 bits (483), Expect = 4.285e-46 Identity = 166/619 (26.82%), Postives = 291/619 (47.01%), Query Frame = 0 Query: 259 LDASREEEGVRDLHEYLGVIGQETS-----------RRAHRLAFDLYRKCRSLKGLRRFASLFSCPAPELGAALHASRTSGGDLDEQHRPLIPTPNMYPENAAAEYTTPSLPKYEEVLRAAKHMLAMELAHEPRLRACFRQIYRAEATLTTHPTIKGHNEITDQFHRLHGFQFINKKPLYEFLQPPSDSQPDLFLRIMQAEREGFITFTIDAPANTAAESTSWTPNGSSAWPSLLQTLEGLYMPYRTASLDTSLVDAWNEQRKDILSLTLSSHILPMLEAEVKREMARKAQEAVVAAAADALREVVNTGTYMPQYRNINCTLIPPFEDFQLRLSQRFPFELTPLSSSSLEVVAVFQASSRQEASFAVSVGRDGAVRDYVMLPPLRSGY-DGDADQRDKLQ----KIIVEAKPAVVVVNAVVGGYEALRMKERLAKVVDNVARLYQHGELAA-EDEEGWEPCEVLLIDDHLASVYARSPRVKKEFTDYHDNLRIAIGMARQMQDPLALVTLIY---AAQDPRGGRFGGPGYQLSYLSLHDLQDQVNPHELSRRWEEVLVDAVNDVGVDLNKSISSLHLAGLLPFVSGLGFRKANALRAAIRNTHGSLVVSRAQLIEEGLL 857 L ++ +E+ +DL E+ G+ E+S RR R F Y+ C + GLR + F+ + LG + +G D ++ R +PTP+ P A +YTT P ++V++ A+H+ A ++A EP +R C R++YR A L+T T KG EI D+FH HG Q+I K P+ + + DL+L+I +AE+EG +T TI N A+ L+ LE +Y+ S + + W QR +L ++S ++ E E+KR++ +++ VV +ALRE ++ Y P + PF +V+++ SS + V++ +G + D GY D + +KL K + E VVV V G + + M VVD V RL + + + +G + +++ + D +A++++RS R +EF + + +R AI + R +++P + + ++ A +P GR +L +L++H +Q + L R ++ V V +N GVD+N + H + L F+ GLG KA ++ +R + V R +L+ +G + Sbjct: 452 LFSTPDEKIYKDLSEFFGLDALESSGQSKENSDKKYRRPVRRTF--YQIC-TKAGLRPVSLAFTMNSSVLGGIV-----AGVDHEDTIRD-VPTPDESPGVLAQKYTTKEFPTVDDVMKGARHIAASKVAAEPNVRKCIRELYRQNAVLSTEATAKGREEI-DEFHYCHGLQYIEKMPVLDVFEAS-----DLWLKISRAEKEGLLTTTI---INEKAQD-------------LMDPLEPIYL-----SPNNDSDEEWQSQRHLVLQEAINSFMILSFENELKRDLTVASRDVVVKMCGNALRERLSVRPYEPS------EGVDPF------------------------IVSIWVESSMDSIAHIVALDVNGEMVDKT------EGYCKRDVNNIEKLSATLLKFLTEHSQTHVVVINVSAGMKCMDM----GGVVDEVRRLLGRDDASRFGNGDGHDFLDIVFLKDDVANMFSRSKRADQEFPEESEYVRAAICLGRYLRNPASELCAMWGNVALNEPNRGR------ELLFLNVHMMQHSLVKDLLLREYDRVFVQVINKYGVDINLLANHKHTSYQLQFICGLGPVKAASVLDKVRAKN--YVERRQELLSKGFV 986
BLAST of EWM30006.1 vs. NCBI_GenBank
Match: gi|1214713496|gb|OWZ24386.1| (hypothetical protein PHMEG_000564 [Phytophthora megakarya]) HSP 1 Score: 190.66 bits (483), Expect = 4.752e-46 Identity = 168/629 (26.71%), Postives = 290/629 (46.10%), Query Frame = 0 Query: 249 RLCPDSYRTMLDASREEEGVRDLHEYLGVIGQETS-----------RRAHRLAFDLYRKCRSLKGLRRFASLFSCPAPELGAALHASRTSGGDLDEQHRPLIPTPNMYPENAAAEYTTPSLPKYEEVLRAAKHMLAMELAHEPRLRACFRQIYRAEATLTTHPTIKGHNEITDQFHRLHGFQFINKKPLYEFLQPPSDSQPDLFLRIMQAEREGFITFTIDAPANTAAESTSWTPNGSSAWPSLLQTLEGLYMPYRTASLDTSLVDAWNEQRKDILSLTLSSHILPMLEAEVKREMARKAQEAVVAAAADALREVVNTGTYMPQYRNINCTLIPPFEDFQLRLSQRFPFELTPLSSSSLEVVAVFQASSRQEASFAVSVGRDGAVRDYVMLPPLRSGY-DGDADQRDKLQ----KIIVEAKPAVVVVNAVVGGYEALRMKERLAKVVDNVARLYQHGELAA-EDEEGWEPCEVLLIDDHLASVYARSPRVKKEFTDYHDNLRIAIGMARQMQDPLALVTLIY---AAQDPRGGRFGGPGYQLSYLSLHDLQDQVNPHELSRRWEEVLVDAVNDVGVDLNKSISSLHLAGLLPFVSGLGFRKANALRAAIRNTHGSLVVSRAQLIEEGLL 857 R C + +M D E+ +DL E+ + QE+S RR R F Y+ C + GLR + F+ A LG + +G D DE R +PTP P A +YTT P ++V++ A+H+ A ++A EP +R C R++YR A L+T T+KG EI D+FH HG Q+I K P+ E + DL+L+I +AE+EG + TI N A+ L+ LE +Y+ S + + W QR +L +++ ++ E E+KR++ +++ VV DALRE ++ Y P + PF +V+++ S+ V++ +G + D GY D + +KL K + E VVV V G + + M VVD V RL + + + +G + +++ + D + ++++RS R +EF + + +R A+ + R +++P + + ++ A +P GR +L +L++H +Q + L + ++ V V +N GVD+N + H + L F+ GLG KA ++ +R + V R +L+ +G + Sbjct: 439 RKCYEQLFSMPD----EKTYKDLSEFFALDAQESSGQDKMGSDHKYRRPVRRTF--YQIC-TKAGLRPVSLAFTMNASVLGGIV-----AGVDHDEAIRE-VPTPEESPGVLAQKYTTKEFPTVDDVMKGARHIAASKVAGEPNVRKCIRELYRQNAVLSTETTVKGREEI-DEFHYCHGLQYIEKMPVLEVFE-----AGDLWLKIARAEKEGLLKITI---INEKAQD-------------LMDPLEPIYL-----SPNNDSDEEWQTQRHLVLQEAINNFMVLSFENELKRDLTVASRDVVVKMCGDALRERLSVRPYEP------ADGVDPF------------------------IVSIWVESTMDSIGHIVALDVNGEMVDKT------EGYCKRDVNSIEKLTATLLKFLTEHSQTHVVVINVSAGMKCMDM----GGVVDEVRRLLGRDDASRFGNGDGHDFLDIVFLKDDVPNMFSRSKRADQEFPEESEYVRAAVALGRYLRNPASELCAMWGNVALNEPSRGR------ELLFLNVHMMQHSLVKDLLLKEYDRVFVQVINKYGVDINLLANHKHTSYQLQFICGLGPVKAASVLDKVRAKN--YVERRQELLSKGYV 979 The following BLAST results are available for this feature:
BLAST of EWM30006.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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