rna645, rna645 (mRNA) Nannochloropsis gaditana

Overview
Namerna645
Unique Namerna645
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2041
Alignment locationCM002456.1:74856..75469 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100346g6.7659.mrna
Orig protein idgnl|cribi|Naga_100346g6.7659
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:74856..75469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100346g6gene618Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna645rna645-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30031.1cds645Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna645 ID=rna645|Name=rna645|organism=Nannochloropsis gaditana|type=mRNA|length=2041bp
GAGCACGATGAGGGTTTCACGCTGAGGGAATAACAAGAGTTTAACAGACA
AAAGCGGGGGAGAGCAGTAGAAGCAGCAAACGAGAATGTCCCTCCGCCAG
AATACTTTTCGAGCAGAGCCTCTTTGTACACCCCAACATTCAAGAATCCT
TACAGAGCAGGTACAATCCACTGCAAATGGTCATATTGTGGTCAGGTGTG
GCGGCTGGGATCTGTGACATCAGAACACTCGCCATAATCCAAAAAGCGAC
GCTTCTACCAGTTTAGCGGGGAAGGAAAGCTCCTACAGCAACTACAACAG
CAACATGTCACTTTTCCCCGTGCATTTCTGACTCTCCTTTGATTTGAGTG
GCCTATCTCCTTTCCTTTTGAAGTAGCTACAAATATTATATGCTCACTGT
GGGGTCGATCGATTTGTCTAAACGCCTGCGTGTATGGAAAAGGCTGAATT
GGGAGCAGTTGTCAACAGAACAATGCTGGCAGCACGCCCTACTCCTCTCA
CAACTTTCAAAACATGTAGATTATGCCTTCAATCTACGAACTTAAAAAAA
GTCTTTCACTGAAAAGCGGTGAAGTGCTGGGGACTGGATTCATTGTCAAG
GACGTCGAGCAGGCCACAATGGACGAAAAGAAGCCAAGAGAGCTCTACAA
CTTCAAAGTCCATTTGTGGGTCTCGCCCCCGTCTTCCTCTTCTTCTACTA
CCAAAAAACACAGCACCCGTCGGAGCCCGGGGGCGAAGCGCCGCAAAGTT
TTGGACAAGGCTGATTTGGAGGGGGCCGAAAAGGCGTTAATTCAGACGGC
AGAAGAAAGGCAGATCATGTATTCTTCGTATGGATCTCCTTACGAAGTCC
ATCTGGAGCATGTCAAAGCGACGCCTGCAGGTGAGGGGAGGCAGGAGAAA
GTGGCTGGCACACGGAAGGGAGAAGAAAGCGCGATTGAACAAGAAGGGCT
GATAGAGATCCATGCGCTGGCGGTAGCAAAACGTCGACGTGATCTGCCCC
GGCTGTCGGATACCGGGCACGGGACAAGCGAAGAGGAGGAAGCTGCAGCG
GACGACGACATGAAACGCAGAGGTTTCCGAGTAGTCAAGGCGCATTTCAA
ATCCAGTCATTGTCCTGAGTGCGGGCATGAGTTCATCCCTGGAGAGCATA
TCGCCAAACCTCAAGACGAGCACAATCGTGGTGGTTGGGCTCATTCCACT
TGCTTGGCGAAGCGGCTAGAGACGCCTCAGACACCTACCAAGGAGCAAAA
GGTTGAAGTAGGGAATTAAAGACCCGACAAAGGACTTGCTCGAAGATCTG
GGTGAGGGTGAGGTCGTATCTTATGCGAGAGGAATGCTTTAGTGACATTT
TATTTTCTATGCTCTAAGGTAGATTTTCCGAGAGTTAGAATTAGTGAGAT
CGTCGCCTGGCTGATTTAAGGCTTCTAGATGCACTCAAGACATTTCACAG
TGGCGAAACTTATTTGGTAGGTTGACGGGACACAGTACATGCCTCCCATC
CTCAATAATTAATCATAGTGTCCTTCTGATCTTTACTTGCAGCATTCAGA
GTTGACCCCCCACCTAAGCCATATTACCATGAGACGTGATGATCATGGAC
TTTAGTGATATTGCTGTTGCTTTTCATCGAATAAAACTAACTATTTCTTT
GTGCCTTTAACCTCACCAAATCGTCCCTCTTACTTCTTGCTAGGGTGCAG
CAGGCTGAAAAGCAGAAAGTGCTCAATTCCACTGATGCATGATTTTGAAA
TGTTTCGCTTCGAGACCCATGAAAACGCCCATAAATGCGCACTAAGACAT
TCTGGAACAGAATATAGTCCATTGTATCTTTCAGCTTAACTAAATCAAAC
CTTGAATGCCAAATACATGACACTCTAAGCGCTGGATACGAGGCGTTGAA
CCTCCCAACGGTGGACGGGGGCAGCGGATTTGAAATTTAAATCATCGGCG
TTGTGCCTGGATATTTTTCCAAGCAGCCATGCATACCACACACAATGTCG
CACCACGTCTTGAACTTACAGCTGACATCAATTTATTTTCA
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protein sequence of rna645

>rna645-protein ID=rna645-protein|Name=rna645|organism=Nannochloropsis gaditana|type=polypeptide|length=148bp
MERASDCVVELLTQHNKNSGLTTLEDKLISALNTSRTWKTLCVKYWQIFA
GNAGRQMLASKVLPVLKLPVEKRTKKKRFAKNAWAAITQKLISRMESIPQ
SKSNAIGRKSALSWHPSYSYQLECSKTDGTHREKKGIDKYQNRRNFGN
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mRNA from alignment at CM002456.1:74856..75469-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna645 ID=rna645|Name=rna645|organism=Nannochloropsis gaditana|type=mRNA|length=614bp|location=Sequence derived from alignment at CM002456.1:74856..75469- (Nannochloropsis gaditana)
ATGGAGCGGGCGTCCGATTGCGTTGTAGAACTGCTAACTCAACACAATAA
GAACTCTGGCCTGACAACGTTGGAGGACAAATTGATAAGTGCATTGAACA
CTTCCAGGACGTGGAAAACGCTTTGCGTAAAATATTGGCAGATTTTTGCT
GGAAATGCTGGAAGACAAATGCTAGCGAGCAAGGTATTACCAGTGCTAAA
GTTGCCAGTGGAAAAGCGCACAAAAAGTGAGTACTGACTCGGAACAGCAG
CCAGGGAAGTAGCAGTACTAACATGAGAAGGCGCACACCCAGAATGTACT
GAAGGATAGCTGCAGGGAATAGTAACAGTGCTTGATTTGGCAAAGTGCAC
ATAAAGTAGGTACTAAGTGATTGCCACAGGGACTAGTGGGTAGAGAAAAG
GTTCGCGAAGAACGCTTGGGCAGCCATTACTCAGAAATTAATATCACGAA
TGGAGAGTATCCCTCAAAGCAAATCAAACGCTATTGGCAGGAAGTCCGCC
CTCTCGTGGCATCCGTCCTATAGCTATCAATTAGAGTGCTCAAAGACCGA
CGGTACTCATAGGGAGAAGAAAGGTATAGATAAATACCAGAATAGACGGA
ACTTTGGCAATTAG
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Coding sequence (CDS) from alignment at CM002456.1:74856..75469-

>rna645 ID=rna645|Name=rna645|organism=Nannochloropsis gaditana|type=CDS|length=894bp|location=Sequence derived from alignment at CM002456.1:74856..75469- (Nannochloropsis gaditana)
AGAAAAGGTTCGCGAAGAACGCTTGGGCAGCCATTACTCAGAAATTAATA
TCACGAATGGAGAGTATCCCTCAAAGCAAATCAAACGCTATTGGCAGGAA
GTCCGCCCTCTCGTGGCATCCGTCCTATAGCTATCAATTAGAGTGCTCAA
AGACCGACGGTACTCATAGGGAGAAGAAAGGTATAGATAAATACCAGAAT
AGACGGAACTTTGGCAATTAGATGGAGCGGGCGTCCGATTGCGTTGTAGA
ACTGCTAACTCAACACAATAAGAACTCTGGCCTGACAACGTTGGAGGACA
AATTGATAAGTGCATTGAACACTTCCAGGACGTGGAAAACGCTTTGCGTA
AAATATTGGCAGATTTTTGCTGGAAATGCTGGAAGACAAATGCTAGCGAG
CAAGGTATTACCAGTGCTAAAGTTGCCAGTGGAAAAGCGCACAAAAAAGA
AAAGGTTCGCGAAGAACGCTTGGGCAGCCATTACTCAGAAATTAATATCA
CGAATGGAGAGTATCCCTCAAAGCAAATCAAACGCTATTGGCAGGAAGTC
CGCCCTCTCGTGGCATCCGTCCTATAGCTATCAATTAGAGTGCTCAAAGA
CCGACGGTACTCATAGGGAGAAGAAAGGTATAGATAAATACCAGAATAGA
CGGAACTTTGGCAATTAGATGGAGCGGGCGTCCGATTGCGTTGTAGAACT
GCTAACTCAACACAATAAGAACTCTGGCCTGACAACGTTGGAGGACAAAT
TGATAAGTGCATTGAACACTTCCAGGACGTGGAAAACGCTTTGCGTAAAA
TATTGGCAGATTTTTGCTGGAAATGCTGGAAGACAAATGCTAGCGAGCAA
GGTATTACCAGTGCTAAAGTTGCCAGTGGAAAAGCGCACAAAAA
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Synonyms
Publications