rna644, rna644 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna644
Unique Name	rna644
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2038
Alignment location	CM002456.1:72130..74452 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100346g7.7655.mrna
Orig protein id	gnl\|cribi\|Naga_100346g7.7655
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:72130..74452 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100346g7	gene617	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna644	rna644-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30027.1	cds644	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:72130..74452-
coding sequence from alignment at CM002456.1:72130..74452-

mRNA sequence

>rna644 ID=rna644|Name=rna644|organism=Nannochloropsis gaditana|type=mRNA|length=2038bp
GAGCACGATGAGGGTTTCACGCTGAGGGAATAACAAGAGTTTAACAGACA
AAAGCGGGGGAGAGCAGTAGAAGCAGCAAACGAGAATGTCCCTCCGCCAG
AATACTTTTCGAGCAGAGCCTCTTTGTACACCCCAACATTCAAGAATCCT
TACAGAGCAGGTACAATCCACTGCAAATGGTCATATTGTGGTCAGGTGTG
GCGGCTGGGATCTGTGACATCAGAACACTCGCCATAATCCAAAAAGCGAC
GCTTCTACCAGTTTAGCGGGGAAGGAAAGCTCCTACAGCAACTACAACAG
CAACATGTCACTTTTCCCCGTGCATTTCTGACTCTCCTTTGATTTGAGTG
GCCTATCTCCTTTCCTTTTGAAGTAGCTACAAATATTATATGCTCACTGT
GGGGTCGATCGATTTGTCTAAACGCCTGCGTGTATGGAAAAGGCTGAATT
GGGAGCAGTTGTCAACAGAACAATGCTGGCAGCACGCCCTACTCCTCTCA
CAACTTTCAAAACATGTAGATTATGCCTTCAATCTACGAACTTAAAAAAA
GTCTTTCACTGAAAAGCGGTGAAGTGCTGGGGACTGGATTCATTGTCAAG
GACGTCGAGGCCACAATGGACGAAAAGAAGCCAAGAGAGCTCTACAACTT
CAAAGTCCATTTGTGGGTCTCGCCCCCGTCTTCCTCTTCTTCTACTACCA
AAAAACACAGCACCCGTCGGAGCCCGGGGGCGAAGCGCCGCAAAGTTTTG
GACAAGGCTGATTTGGAGGGGGCCGAAAAGGCGTTAATTCAGACGGCAGA
AGAAAGGCAGATCATGTATTCTTCGTATGGATCTCCTTACGAAGTCCATC
TGGAGCATGTCAAAGCGACGCCTGCAGGTGAGGGGAGGCAGGAGAAAGTG
GCTGGCACACGGAAGGGAGAAGAAAGCGCGATTGAACAAGAAGGGCTGAT
AGAGATCCATGCGCTGGCGGTAGCAAAACGTCGACGTGATCTGCCCCGGC
TGTCGGATACCGGGCACGGGACAAGCGAAGAGGAGGAAGCTGCAGCGGAC
GACGACATGAAACGCAGAGGTTTCCGAGTAGTCAAGGCGCATTTCAAATC
CAGTCATTGTCCTGAGTGCGGGCATGAGTTCATCCCTGGAGAGCATATCG
CCAAACCTCAAGACGAGCACAATCGTGGTGGTTGGGCTCATTCCACTTGC
TTGGCGAAGCGGCTAGAGACGCCTCAGACACCTACCAAGGAGCAAAAGGT
TGAAGTAGGGAATTAAAGACCCGACAAAGGACTTGCTCGAAGATCTGGGT
GAGGGTGAGGTCGTATCTTATGCGAGAGGAATGCTTTAGTGACATTTTAT
TTTCTATGCTCTAAGGTAGATTTTCCGAGAGTTAGAATTAGTGAGATCGT
CGCCTGGCTGATTTAAGGCTTCTAGATGCACTCAAGACATTTCACAGTGG
CGAAACTTATTTGGTAGGTTGACGGGACACAGTACATGCCTCCCATCCTC
AATAATTAATCATAGTGTCCTTCTGATCTTTACTTGCAGCATTCAGAGTT
GACCCCCCACCTAAGCCATATTACCATGAGACGTGATGATCATGGACTTT
AGTGATATTGCTGTTGCTTTTCATCGAATAAAACTAACTATTTCTTTGTG
CCTTTAACCTCACCAAATCGTCCCTCTTACTTCTTGCTAGGGTGCAGCAG
GCTGAAAAGCAGAAAGTGCTCAATTCCACTGATGCATGATTTTGAAATGT
TTCGCTTCGAGACCCATGAAAACGCCCATAAATGCGCACTAAGACATTCT
GGAACAGAATATAGTCCATTGTATCTTTCAGCTTAACTAAATCAAACCTT
GAATGCCAAATACATGACACTCTAAGCGCTGGATACGAGGCGTTGAACCT
CCCAACGGTGGACGGGGGCAGCGGATTTGAAATTTAAATCATCGGCGTTG
TGCCTGGATATTTTTCCAAGCAGCCATGCATACCACACACAATGTCGCAC
CACGTCTTGAACTTACAGCTGACATCAATTTATTTTCA

protein sequence of rna644

>rna644-protein ID=rna644-protein|Name=rna644|organism=Nannochloropsis gaditana|type=polypeptide|length=248bp
MPSIYELKKSLSLKSGEVLGTGFIVKDVEQATMDEKKPRELYNFKVHLWV
SPPSSSSSTTKKHSTRRSPGAKRRKVLDKADLEGAEKALIQTAEERQIMY
SSYGSPYEVHLEHVKATPAGEGRQEKVAGTRKGEESAIEQEGLIEIHALA
VAKRRRDLPRLSDTGHGTSEEEEAAADDDMKRRGFRVVKAHFKSSHCPEC
GHEFIPGEHIAKPQDEHNRGGWAHSTCLAKRLETPQTPTKEQKVEVGN

mRNA from alignment at CM002456.1:72130..74452-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna644 ID=rna644|Name=rna644|organism=Nannochloropsis gaditana|type=mRNA|length=2323bp|location=Sequence derived from alignment at CM002456.1:72130..74452- (Nannochloropsis gaditana)
GAGCACGATGAGGGTTTCACGCTGAGGGAATAACAAGAGTTTAACAGACA
AAAGCGGGGGAGAGCAGTAGAAGCAGCAAACGAGAATGTCCCTCCGCCAG
AATACTTTTCGAGCAGAGCCTCTTTGTACACCCCAACATTCAAGAATCCT
TACAGAGCAGGTACAATCCACTGCAAATGGTCATATTGTGGTCAGGTGTG
GCGGCTGGGATCTGTGACATCAGAACACTCGCCATAATCCAAAAAGCGAC
GCTTCTACCAGTTTAGCGGGGAAGGAAAGCTCCTACAGCAACTACAACAG
CAACATGTCACTTTTCCCCGTGCATTTCTGACTCTCCTTTGATTTGAGTG
GCCTATCTCCTTTCCTTTTGAAGTAGCTACAAATATTATATGCTCACTGT
GGGGTCGATCGATTTGTCTAAACGCCTGCGTGTATGGAAAAGGCTGAATT
GGGAGCAGTTGTCAACAGAACAATGCTGGCAGCACGCCCTACTCCTCTCA
CAACTTTCAAAACATGTAGATTATGCCTTCAATCTACGAACTTAAAAAAA
GTCTTTCACTGAAAAGCGGTGAAGTGCTGGGGACTGGATTCATTGTCAAG
GACGTCGAGGTTCGTGTAGTTGAGGTCTCTGGAGATGTCTCAGAGGAGCT
GTCTTAGAAGGGATCCGGGGGGACAAAAACTGTATGCATGTTTATTATTG
TAGATTCTCTCTATGGACGGGTATGGCCATATCTTAGCTAGTGGAGATGG
ATTATGTGACTTTCAATGGCTTCAAGCAGATGTATGCACAGAATACTACC
TGCGAAGACGCTTCACAGCCCGCCATCTCGTTATTTTCCTCCCACATCCA
CAATCCACACTATCGGAAAAACTCATTCCCCCGTCGGGTAGCAGGCCACA
ATGGACGAAAAGAAGCCAAGAGAGCTCTACAACTTCAAAGTCCATTTGTG
GGTCTCGCCCCCGTCTTCCTCTTCTTCTACTACCAAAAAACACAGCACCC
GTCGGAGCCCGGGGGCGAAGCGCCGCAAAGTTTTGGACAAGGCTGATTTG
GAGGGGGCCGAAAAGGCGTTAATTCAGACGGCAGAAGAAAGGCAGATCAT
GTATTCTTCGTATGGATCTCCTTACGAAGTCCATCTGGAGCATGTCAAAG
CGACGCCTGCAGGTGAGGGGAGGCAGGAGAAAGTGGCTGGCACACGGAAG
GGAGAAGAAAGCGCGATTGAACAAGAAGGGCTGATAGAGATCCATGCGCT
GGCGGTAGCAAAACGTCGACGTGATCTGCCCCGGCTGTCGGATACCGGGC
ACGGGACAAGCGAAGAGGAGGAAGCTGCAGCGGACGACGACATGAAACGC
AGAGGTTTCCGAGTAGTCAAGGCGCATTTCAAATCCAGTCATTGTCCTGA
GTGCGGGCATGAGTTCATCCCTGGAGAGCATATCGCCAAACCTCAAGACG
AGCACAATCGTGGTGGTTGGGCTCATTCCACTTGCTTGGCGAAGCGGCTA
GAGACGCCTCAGACACCTACCAAGGAGCAAAAGGTTGAAGTAGGGAATTA
AAGACCCGACAAAGGACTTGCTCGAAGATCTGGGTGAGGGTGAGGTCGTA
TCTTATGCGAGAGGAATGCTTTAGTGACATTTTATTTTCTATGCTCTAAG
GTAGATTTTCCGAGAGTTAGAATTAGTGAGATCGTCGCCTGGCTGATTTA
AGGCTTCTAGATGCACTCAAGACATTTCACAGTGGCGAAACTTATTTGGT
AGGTTGACGGGACACAGTACATGCCTCCCATCCTCAATAATTAATCATAG
TGTCCTTCTGATCTTTACTTGCAGCATTCAGAGTTGACCCCCCACCTAAG
CCATATTACCATGAGACGTGATGATCATGGACTTTAGTGATATTGCTGTT
GCTTTTCATCGAATAAAACTAACTATTTCTTTGTGCCTTTAACCTCACCA
AATCGTCCCTCTTACTTCTTGCTAGGGTGCAGCAGGCTGAAAAGCAGAAA
GTGCTCAATTCCACTGATGCATGATTTTGAAATGTTTCGCTTCGAGACCC
ATGAAAACGCCCATAAATGCGCACTAAGACATTCTGGAACAGAATATAGT
CCATTGTATCTTTCAGCTTAACTAAATCAAACCTTGAATGCCAAATACAT
GACACTCTAAGCGCTGGATACGAGGCGTTGAACCTCCCAACGGTGGACGG
GGGCAGCGGATTTGAAATTTAAATCATCGGCGTTGTGCCTGGATATTTTT
CCAAGCAGCCATGCATACCACACACAATGTCGCACCACGTCTTGAACTTA
CAGCTGACATCAATTTATTTTCA

Coding sequence (CDS) from alignment at CM002456.1:72130..74452-

>rna644 ID=rna644|Name=rna644|organism=Nannochloropsis gaditana|type=CDS|length=1494bp|location=Sequence derived from alignment at CM002456.1:72130..74452- (Nannochloropsis gaditana)
CAGGCCACAATGGACGAAAAGAAGCCAAGAGAGCTCTACAACTTCAAAGT
CCATTTGTGGGTCTCGCCCCCGTCTTCCTCTTCTTCTACTACCAAAAAAC
ACAGCACCCGTCGGAGCCCGGGGGCGAAGCGCCGCAAAGTTTTGGACAAG
GCTGATTTGGAGGGGGCCGAAAAGGCGTTAATTCAGACGGCAGAAGAAAG
GCAGATCATGTATTCTTCGTATGGATCTCCTTACGAAGTCCATCTGGAGC
ATGTCAAAGCGACGCCTGCAGGTGAGGGGAGGCAGGAGAAAGTGGCTGGC
ACACGGAAGGGAGAAGAAAGCGCGATTGAACAAGAAGGGCTGATAGAGAT
CCATGCGCTGGCGGTAGCAAAACGTCGACGTGATCTGCCCCGGCTGTCGG
ATACCGGGCACGGGACAAGCGAAGAGGAGGAAGCTGCAGCGGACGACGAC
ATGAAACGCAGAGGTTTCCGAGTAGTCAAGGCGCATTTCAAATCCAGTCA
TTGTCCTGAGTGCGGGCATGAGTTCATCCCTGGAGAGCATATCGCCAAAC
CTCAAGACGAGCACAATCGTGGTGGTTGGGCTCATTCCACTTGCTTGGCG
AAGCGGCTAGAGACGCCTCAGACACCTACCAAGGAGCAAAAGGTTGAAGT
AGGGAATTAAATGCCTTCAATCTACGAACTTAAAAAAAGTCTTTCACTGA
AAAGCGGTGAAGTGCTGGGGACTGGATTCATTGTCAAGGACGTCGAGCAG
GCCACAATGGACGAAAAGAAGCCAAGAGAGCTCTACAACTTCAAAGTCCA
TTTGTGGGTCTCGCCCCCGTCTTCCTCTTCTTCTACTACCAAAAAACACA
GCACCCGTCGGAGCCCGGGGGCGAAGCGCCGCAAAGTTTTGGACAAGGCT
GATTTGGAGGGGGCCGAAAAGGCGTTAATTCAGACGGCAGAAGAAAGGCA
GATCATGTATTCTTCGTATGGATCTCCTTACGAAGTCCATCTGGAGCATG
TCAAAGCGACGCCTGCAGGTGAGGGGAGGCAGGAGAAAGTGGCTGGCACA
CGGAAGGGAGAAGAAAGCGCGATTGAACAAGAAGGGCTGATAGAGATCCA
TGCGCTGGCGGTAGCAAAACGTCGACGTGATCTGCCCCGGCTGTCGGATA
CCGGGCACGGGACAAGCGAAGAGGAGGAAGCTGCAGCGGACGACGACATG
AAACGCAGAGGTTTCCGAGTAGTCAAGGCGCATTTCAAATCCAGTCATTG
TCCTGAGTGCGGGCATGAGTTCATCCCTGGAGAGCATATCGCCAAACCTC
AAGACGAGCACAATCGTGGTGGTTGGGCTCATTCCACTTGCTTGGCGAAG
CGGCTAGAGACGCCTCAGACACCTACCAAGGAGCAAAAGGTTGAAGTAGG
GAATTAAATGCCTTCAATCTACGAACTTAAAAAAAGTCTTTCACTGAAAA
GCGGTGAAGTGCTGGGGACTGGATTCATTGTCAAGGACGTCGAG

Synonyms

Publications