EWM30048.1, cds624 (CDS) Nannochloropsis gaditana

Overview
NameEWM30048.1
Unique Namecds624
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:19846..19974 +
Alignment locationCM002456.1:20120..20231 +
Alignment locationCM002456.1:20392..20505 +
Alignment locationCM002456.1:20622..20740 +
Alignment locationCM002456.1:20870..20974 +
Alignment locationCM002456.1:21089..21313 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30048.1
ProductDihydrodipicolinate reductase
Orig transcript idgnl|cribi|Naga_100225g7.3526.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:19846..19974 +
CM002456.1supercontigCM002456.1:20120..20231 +
CM002456.1supercontigCM002456.1:20392..20505 +
CM002456.1supercontigCM002456.1:20622..20740 +
CM002456.1supercontigCM002456.1:20870..20974 +
CM002456.1supercontigCM002456.1:21089..21313 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0009089lysine biosynthetic process via diaminopimelate
GO:0055114oxidation-reduction process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:00088394-hydroxy-tetrahydrodipicolinate reductase
Vocabulary: INTERPRO
TermDefinition
IPR023940DHDPR_bac
IPR000846DapB_N
IPR016040NAD(P)-bd_dom
Homology
BLAST of EWM30048.1 vs. NCBI_GenBank
Match: gi|585112678|gb|EWM30048.1| (Dihydrodipicolinate reductase [Nannochloropsis gaditana])

HSP 1 Score: 540.421 bits (1391), Expect = 0.000e+0
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0
Query:    1 MRLFLLLVAFPALVSSFVGMLPSRHKQSQGRQSQLRMMAKLPKVAVMVNGLPGAMGKEVAAACLRRGLEVCSVGLTGPQVDEECVDVDDGEGGKPQTIRLVKGPVTGAGDEECDARLQGLVAGYRESGTRLIAVDYTHPTAVNPNGMLYARHKMDFVMGTTGGDRDKLLKDVEEAGIYAVIAPNMAKQIVALQAGLETMAGTFPGAFEGYNLRVRLPSLPSSLPFSLPLLFPFYFSFVFKVYLLFFLDKSISGQASLVTVLGSSVLS 267
            MRLFLLLVAFPALVSSFVGMLPSRHKQSQGRQSQLRMMAKLPKVAVMVNGLPGAMGKEVAAACLRRGLEVCSVGLTGPQVDEECVDVDDGEGGKPQTIRLVKGPVTGAGDEECDARLQGLVAGYRESGTRLIAVDYTHPTAVNPNGMLYARHKMDFVMGTTGGDRDKLLKDVEEAGIYAVIAPNMAKQIVALQAGLETMAGTFPGAFEGYNLRVRLPSLPSSLPFSLPLLFPFYFSFVFKVYLLFFLDKSISGQASLVTVLGSSVLS
Sbjct:    1 MRLFLLLVAFPALVSSFVGMLPSRHKQSQGRQSQLRMMAKLPKVAVMVNGLPGAMGKEVAAACLRRGLEVCSVGLTGPQVDEECVDVDDGEGGKPQTIRLVKGPVTGAGDEECDARLQGLVAGYRESGTRLIAVDYTHPTAVNPNGMLYARHKMDFVMGTTGGDRDKLLKDVEEAGIYAVIAPNMAKQIVALQAGLETMAGTFPGAFEGYNLRVRLPSLPSSLPFSLPLLFPFYFSFVFKVYLLFFLDKSISGQASLVTVLGSSVLS 267          
BLAST of EWM30048.1 vs. NCBI_GenBank
Match: gi|585112677|gb|EWM30047.1| (Dihydrodipicolinate reductase [Nannochloropsis gaditana])

HSP 1 Score: 439.499 bits (1129), Expect = 2.759e-153
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0
Query:    1 MRLFLLLVAFPALVSSFVGMLPSRHKQSQGRQSQLRMMAKLPKVAVMVNGLPGAMGKEVAAACLRRGLEVCSVGLTGPQVDEECVDVDDGEGGKPQTIRLVKGPVTGAGDEECDARLQGLVAGYRESGTRLIAVDYTHPTAVNPNGMLYARHKMDFVMGTTGGDRDKLLKDVEEAGIYAVIAPNMAKQIVALQAGLETMAGTFPGAFEGYNLRV 214
            MRLFLLLVAFPALVSSFVGMLPSRHKQSQGRQSQLRMMAKLPKVAVMVNGLPGAMGKEVAAACLRRGLEVCSVGLTGPQVDEECVDVDDGEGGKPQTIRLVKGPVTGAGDEECDARLQGLVAGYRESGTRLIAVDYTHPTAVNPNGMLYARHKMDFVMGTTGGDRDKLLKDVEEAGIYAVIAPNMAKQIVALQAGLETMAGTFPGAFEGYNLRV
Sbjct:    1 MRLFLLLVAFPALVSSFVGMLPSRHKQSQGRQSQLRMMAKLPKVAVMVNGLPGAMGKEVAAACLRRGLEVCSVGLTGPQVDEECVDVDDGEGGKPQTIRLVKGPVTGAGDEECDARLQGLVAGYRESGTRLIAVDYTHPTAVNPNGMLYARHKMDFVMGTTGGDRDKLLKDVEEAGIYAVIAPNMAKQIVALQAGLETMAGTFPGAFEGYNLRV 214          
BLAST of EWM30048.1 vs. NCBI_GenBank
Match: gi|1210525968|dbj|GAX15254.1| (4-hydroxy-tetrahydrodipicolinate reductase [Fistulifera solaris])

HSP 1 Score: 172.94 bits (437), Expect = 2.015e-48
Identity = 92/189 (48.68%), Postives = 119/189 (62.96%), Query Frame = 0
Query:   26 KQSQGRQSQLRMMAKLPKVAVMVNGLPGAMGKEVAAACLRRGLEVCSVGLTGPQVDEECVDVDDGEGGKPQTIRLVKGPVTGAGDEECDARLQGLVAGYRESGTRLIAVDYTHPTAVNPNGMLYARHKMDFVMGTTGGDRDKLLKDVEEAGIYAVIAPNMAKQIVALQAGLETMAGTFPGAFEGYNLRV 214
            +QS  R + L  M       +MVNGLPG M    A ACLR+GL++  V +TGP V+   + V D   GK Q ++L+    T         +LQ  +AG + SG  L+A+DYTHP+AVN N   Y + K+ FVMGTTGGDRD+L+KDV+  G + VIAPNM KQIVA+QA LE +A  FPGAF+GY L V
Sbjct:   55 QQSARRITTLHAMDD--DTFIMVNGLPGPMATAAAEACLRKGLKLAPVAMTGPDVEPSTISVFDTVTGKKQDVKLIPSKET--------EKLQASIAGLKTSG-NLLAIDYTHPSAVNSNAQFYVKEKIPFVMGTTGGDRDQLMKDVQ--GHFCVIAPNMGKQIVAMQAALEDLATKFPGAFDGYKLSV 230          
BLAST of EWM30048.1 vs. NCBI_GenBank
Match: gi|1210521105|dbj|GAX19853.1| (4-hydroxy-tetrahydrodipicolinate reductase [Fistulifera solaris])

HSP 1 Score: 167.548 bits (423), Expect = 1.056e-46
Identity = 90/189 (47.62%), Postives = 120/189 (63.49%), Query Frame = 0
Query:   26 KQSQGRQSQLRMMAKLPKVAVMVNGLPGAMGKEVAAACLRRGLEVCSVGLTGPQVDEECVDVDDGEGGKPQTIRLVKGPVTGAGDEECDARLQGLVAGYRESGTRLIAVDYTHPTAVNPNGMLYARHKMDFVMGTTGGDRDKLLKDVEEAGIYAVIAPNMAKQIVALQAGLETMAGTFPGAFEGYNLRV 214
            +QS  R + L  M       +MVNG+PG M    A ACLR+GL++  V +TGP V+   + V D    K Q ++L+         +E + +LQ  +AG + SG  L+A+DYTHP+AVN N   Y + K+ FVMGTTGGDRD+L+KDV+  G + VIAPNM KQIVA+QA LE +A  FPGAF+GY L V
Sbjct:   26 QQSARRITTLHAMDD--DTFIMVNGMPGPMATAAAEACLRKGLKLAPVAMTGPDVEPSTISVYDTVTEKKQDVKLIPS-------KEIE-KLQASIAGLKASG-NLLAIDYTHPSAVNSNAQFYVKEKIPFVMGTTGGDRDQLMKDVQ--GHFCVIAPNMGKQIVAMQAALEDLATKFPGAFDGYKLSV 201          
BLAST of EWM30048.1 vs. NCBI_GenBank
Match: gi|397567388|gb|EJK45557.1| (hypothetical protein THAOC_35827 [Thalassiosira oceanica])

HSP 1 Score: 167.162 bits (422), Expect = 3.470e-46
Identity = 92/196 (46.94%), Postives = 120/196 (61.22%), Query Frame = 0
Query:   22 PSRHKQSQGRQSQLRMMAKLP-KVAVMVNGLPGAMGKEVAAACLRRGLEVCSVGLTGPQVDEECVDVDDGEGGKPQTIRLVKGPVTGAGDEECDARLQGLVAGYRESGTR--LIAVDYTHPTAVNPNGMLYARHKMDFVMGTTGGDRDKLLKDVEEAGIYAVIAPNMAKQIVALQAGLETMAGTFPGAFEGYNLRV 214
            PSR  ++          A+ P  + VMVNG+PG M    A ACLR+GL +  V +TGP ++   V V D   G+   +RL+  P    G EE  + L    AG RE+  +  ++A+DYTHP+AVN N + YA + + FVMGTTGGDRDKL+ DV     +AVIAPNM KQIVA+QAGLE +A  FP AF GY L+V
Sbjct:   37 PSRMTETTQTDGGADADAEDPASLRVMVNGMPGPMASAAAEACLRKGLSLSPVAMTGPDIEPSTVTVTDDVTGRSADVRLI--PANEDGREEIKSSL----AGIREAAGKENVLAIDYTHPSAVNGNAVFYAENDLPFVMGTTGGDRDKLMDDVVSRKAFAVIAPNMGKQIVAMQAGLEDLATKFPSAFAGYKLKV 226          
BLAST of EWM30048.1 vs. NCBI_GenBank
Match: gi|219112073|ref|XP_002177788.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410673|gb|EEC50602.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 163.696 bits (413), Expect = 1.050e-45
Identity = 86/169 (50.89%), Postives = 107/169 (63.31%), Query Frame = 0
Query:   46 VMVNGLPGAMGKEVAAACLRRGLEVCSVGLTGPQVDEECVDVDDGEGGKPQTIRLVKGPVTGAGDEECDARLQGLVAGYRESGTRLIAVDYTHPTAVNPNGMLYARHKMDFVMGTTGGDRDKLLKDVEEAGIYAVIAPNMAKQIVALQAGLETMAGTFPGAFEGYNLRV 214
            VMVNG+PG M    A ACLR+GL++  V +TGP V+     V D   G   ++RLV      + D E    L   VAG + +  RL+A+DYTHP+AVN N   Y    + FVMGTTGGDRD+L+KDVE  G + VIAPNM KQIVA+QA LE +A  +P AFEGY L V
Sbjct:    1 VMVNGMPGPMATAAAEACLRKGLQLAPVAMTGPDVEASTFIVTDTVTGTSSSVRLVP-----SSDTE---ELVSAVAGMQTASERLLAIDYTHPSAVNGNAKFYVEQNIPFVMGTTGGDRDELMKDVE--GHFCVIAPNMGKQIVAMQAALEDLANKYPSAFEGYQLEV 159          
BLAST of EWM30048.1 vs. NCBI_GenBank
Match: gi|224003431|ref|XP_002291387.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973163|gb|EED91494.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 163.696 bits (413), Expect = 1.990e-45
Identity = 86/171 (50.29%), Postives = 108/171 (63.16%), Query Frame = 0
Query:   46 VMVNGLPGAMGKEVAAACLRRGLEVCSVGLTGPQVDEECVDVDDGEGGKPQTIRLVKGPVTGAGDEECDARLQGLVAGYRES--GTRLIAVDYTHPTAVNPNGMLYARHKMDFVMGTTGGDRDKLLKDVEEAGIYAVIAPNMAKQIVALQAGLETMAGTFPGAFEGYNLRV 214
            +MVNG+PG M    A ACLR+GL +    +TGP ++   + V D        +RL+  P T  G  E  + L GL    RES     ++A+DYTHP+AVN NG+ YA +K+ FVMGTTGGDRD LL D+E    +AVIAPNM KQIVA+QAGLE +A  FP AF GY L V
Sbjct:   14 IMVNGMPGPMATAAAEACLRKGLSLSPFAMTGPDIESSTITVYDDVTDTSANVRLI--PATDDGRMEIVSSLAGL----RESVGDKNVLAIDYTHPSAVNANGVFYADNKLPFVMGTTGGDRDLLLSDMESREAFAVIAPNMGKQIVAMQAGLEDLAAKFPSAFAGYKLEV 178          
BLAST of EWM30048.1 vs. NCBI_GenBank
Match: gi|922866563|gb|KOO33395.1| (dihydrodipicolinate reductase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 157.918 bits (398), Expect = 3.044e-43
Identity = 91/172 (52.91%), Postives = 115/172 (66.86%), Query Frame = 0
Query:   44 VAVMVNGLPGAMGKEVAAACLRR-GLEVCSVGLTGPQVDEECVDVDDGEGGKPQTIRLVKGPVTGAGDEECDARLQGLVAGYRESGTRLIAVDYTHPTAVNPNGMLYARHKMDFVMGTTGGDRDKLLKDVEEAGIYAVIAPNMAKQIVALQAGLETMAGTFPGAFEGYNLRV 214
            VAVM+NGL GAMG+E+AA CL+R G+ +    L   + +   V VDDG GG   T+RL        G E  D   + + A Y +SG+ L+ +D+THP+AVN N   YA HK+ FVMGTTGGDR+ L+K    +G YAVIAPNMAKQIVALQA LE MA  FPG+F+GY+L V
Sbjct:    9 VAVMMNGLRGAMGREIAAVCLKRPGVTLAPFAL---EKEGGEVVVDDGCGGPAVTVRLY-------GTEARDELAERVKAEYPQSGS-LVCIDFTHPSAVNGNAEWYAAHKLPFVMGTTGGDREALMKCTRASGTYAVIAPNMAKQIVALQAALEQMARDFPGSFDGYSLSV 169          
BLAST of EWM30048.1 vs. NCBI_GenBank
Match: gi|299115195|emb|CBN74026.1| (dihydrodipicolinate reductase [Ectocarpus siliculosus])

HSP 1 Score: 154.066 bits (388), Expect = 2.304e-41
Identity = 86/171 (50.29%), Postives = 109/171 (63.74%), Query Frame = 0
Query:   44 VAVMVNGLPGAMGKEVAAACLRRGLEVCSVGLTGPQVDEECVDVDDGEGGKPQTIRLVKGPVTGAGDEECDARLQGLVAGYRESGTRLIAVDYTHPTAVNPNGMLYARHKMDFVMGTTGGDRDKLLKDVEEAGIYAVIAPNMAKQIVALQAGLETMAGTFPGAFEGYNLRV 214
            V VM+NGL G MG +VAAACLR+G  +    ++G    E  V V D +GG P T+ LV  P   A  E CD  +  L    R SG  ++ VDYT P+AVN N   YA+H ++FVMGTTGGDRD L+   E +G+YAVIAPNM KQIVALQ+ ++ MA  FPG+F  Y L +
Sbjct:   51 VWVMMNGLSGKMGLDVAAACLRKGFRIAPYAMSGSGSGE--VSVADPKGGDPTTVTLV--PSDDA--EGCDKAVAELK--RRCSGGSVVVVDYTTPSAVNANAEFYAKHGLNFVMGTTGGDRDALMSVTEGSGVYAVIAPNMGKQIVALQSAIDNMAREFPGSFGDYKLEI 213          
BLAST of EWM30048.1 vs. NCBI_GenBank
Match: gi|1072227691|gb|OEU12430.1| (dihydrodipicolinate reductase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 151.754 bits (382), Expect = 2.136e-40
Identity = 88/214 (41.12%), Postives = 124/214 (57.94%), Query Frame = 0
Query:    5 LLLVAFPAL--VSSFVGMLPSRHKQSQGRQSQLRMMAKLPK----VAVMVNGLPGAMGKEVAAACLRRGLEVCSVGLTGPQVDEECVDVDDGEGGKPQTIRLVKGPVTGAGDEECDARLQGLVAGYRESGTRLIAVDYTHPTAVNPNGMLYARHKMDFVMGTTGGDRDKLLKDVEEAGIYAVIAPNMAKQIVALQAGLETMAGTFPGAFEGYNL 212
            +LLV F +   V++F+ + P+    S    S L  M+        V VMVNG+PG M    A ACLR+GL++  V +TGP +    + V D    K   ++L+      +  +E  A ++G+     E    ++A+DYTHP+AVN N   Y   K+ FVMGTTGGDR+KL++ V +A  +AVIAPNMAKQIVA+QA LE +A  FPG F  Y +
Sbjct:   12 ILLVLFSSFFDVTAFL-VSPAVKTNSWKPSSSLIQMSSTDNDEADVFVMVNGMPGPMATAAAEACLRKGLKLTPVAMTGPDIKANTIVVYDPISEKSSQVKLIPS----SQKDELLAAIEGMKVSCGEKN--ILAIDYTHPSAVNSNAEFYVEQKLPFVMGTTGGDREKLMQGVNDAKHFAVIAPNMAKQIVAMQAALEDLAKKFPGCFSSYKM 218          
The following BLAST results are available for this feature:
BLAST of EWM30048.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112678|gb|EWM30048.1|0.000e+0100.00Dihydrodipicolinate reductase [Nannochloropsis gad... [more]
gi|585112677|gb|EWM30047.1|2.759e-153100.00Dihydrodipicolinate reductase [Nannochloropsis gad... [more]
gi|1210525968|dbj|GAX15254.1|2.015e-4848.684-hydroxy-tetrahydrodipicolinate reductase [Fistul... [more]
gi|1210521105|dbj|GAX19853.1|1.056e-4647.624-hydroxy-tetrahydrodipicolinate reductase [Fistul... [more]
gi|397567388|gb|EJK45557.1|3.470e-4646.94hypothetical protein THAOC_35827 [Thalassiosira oc... [more]
gi|219112073|ref|XP_002177788.1|1.050e-4550.89predicted protein, partial [Phaeodactylum tricornu... [more]
gi|224003431|ref|XP_002291387.1|1.990e-4550.29predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|922866563|gb|KOO33395.1|3.044e-4352.91dihydrodipicolinate reductase [Chrysochromulina sp... [more]
gi|299115195|emb|CBN74026.1|2.304e-4150.29dihydrodipicolinate reductase [Ectocarpus siliculo... [more]
gi|1072227691|gb|OEU12430.1|2.136e-4041.12dihydrodipicolinate reductase [Fragilariopsis cyli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna624rna624Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications