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Properties
| Property Name | Value |
|---|
| Product | Dihydrodipicolinate reductase |
| Orig transcript id | gnl|cribi|Naga_100225g7.3526.mrna |
| Orig protein id | gnl|cribi|Naga_100225g7.3526 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:19359..22373 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna624 ID=rna624|Name=rna624|organism=Nannochloropsis gaditana|type=mRNA|length=1209bp
ATGATGGGGCGGATGACCATCTCAAGAGGGCGAGCTGTAGTGTGGCTCAC
ATCGGTGGCGGCCCCGGTGGTCCTTTTTTTAACCACTTTGCTGCTTGTGA
ACTCCAGATCCACTGCCTTTGTCCGTTCTCCAATCCCCAGGAACCCGCAA
TCCCCCTTCAGCAACTTTTCAGGCAGCAAGAAAGTCTTGCCACGGTACCC
GTCTGATCCTTCGTCCTCCCGTATCGGCATGCACTCAAGCGCCAGCGCGG
GAGCCGCACCTCTGGAAGGGGGCCTCCACGTACCTCCGTCTAAGCAGGGC
GGACTCCGGGACAGACTGGATGCTCTCTATCGCTTCACTCGACCACACAC
CATCCGCGGGACCATTCTCGCCTCCCTAATGGGCGTCTTTCGTTGTTTCC
TGGAGCATCCGAAAGCTTTTGCCAACCCTTTACAGCCCATGCCACGTGCG
ATTTTGGGACTCCTTGCCCTCCTCTGTGGGAATGTGTTCATTGTGGGCAT
TAATCAGATCTACGATGTGGAAATCGACAAGGTAAACAAACCATTCTTGC
CGTTAGCAGCTCAGCGGATGACTGGAAAGGCTGCCTGGGCGGTCGTTTTG
GCAGCGGGCGCGGGCGGACTGGCCATTACCAAATCATTTTTCACCCCCCT
CATCTTCAACATGTATGCGGCAGGCATAGTGGCAGGGACGCTCTATTCTG
TCCCACCCTTCTATTTCAAGCGTTTTCCCCTGATTGCCGCAGCAACGATT
GCATTCGTGCGAGGGTTTAGCCTCAATTTTGGAGTGTACTATGCTGTTCG
GGAAGCTCTGGGAATCCCATTCGCCTGGAACCCTATCGTTCTATTCATCA
CACGCTTCATGACCATCTTTGCCGGTGTCATAGCCGTCTCAAAGGATCTT
CCTGATACGGAGGGAGACAAAAAGTACAACGTTCGAACGTTTGCCACGCG
TGTCGGAGTCAAGAATATGGCGCGGGGAGCGGCGGGGGTGCTCTTTCTCA
ATTATCTTTCCGCGATTGCACAAGGTGTTGTAAATCCTAGTGGAGCTTTC
AGACAGTGGGTAATGGTGGGCGGCCACACTGTACTGGCAGCGCTGCTAAT
ACAGCGGTATAAGAAGCTTGAACCGGACTCATTGGCTTCTATCAAGGCCT
TTTATAAGAGTATCTGGGATTTGTTTTATCTGGAATACGCTTTGTACCCA
TTCCTGTAG back to topprotein sequence of rna624 >rna624-protein ID=rna624-protein|Name=rna624|organism=Nannochloropsis gaditana|type=polypeptide|length=267bp
MRLFLLLVAFPALVSSFVGMLPSRHKQSQGRQSQLRMMAKLPKVAVMVNG
LPGAMGKEVAAACLRRGLEVCSVGLTGPQVDEECVDVDDGEGGKPQTIRL
VKGPVTGAGDEECDARLQGLVAGYRESGTRLIAVDYTHPTAVNPNGMLYA
RHKMDFVMGTTGGDRDKLLKDVEEAGIYAVIAPNMAKQIVALQAGLETMA
GTFPGAFEGYNLRVRLPSLPSSLPFSLPLLFPFYFSFVFKVYLLFFLDKS
ISGQASLVTVLGSSVLS back to topmRNA from alignment at CM002456.1:19359..22373+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna624 ID=rna624|Name=rna624|organism=Nannochloropsis gaditana|type=mRNA|length=3015bp|location=Sequence derived from alignment at CM002456.1:19359..22373+ (Nannochloropsis gaditana)
TTGGCTCATGGCGGCACGCCTAGAGACTCGTCTTACTTGAGACAGAGCTG
ATACATGCAGAGTAAAATAAGATAGACCATACGTGATCAGTGATGGAATA
CCCACATACTATTGCCACTGCACACGTCTTGTAAAGTGGTTTCGAGCCAT
GTCGGGTTCATTCGTGTTGTGAGTCAACCCGACAGCAAGTCCCCACATCG
CTGCCACTGTTGCCCCGCAACTCCCACCACACAGGATGGAAAACATTCTT
TCTATCAGAACGATGACTTTGTCATCTCTTTCTATTGAATGCATGATCGA
CATGGAGAAAGTCTTGCAGGCGCGTTAGCGTCCGGGGGCTGATATTTTTC
TGATTCTAGCATCTTTCCCTTCGTATGACCCTCTGTCACctacctccccg
tcctgaCAGGTTGCTCCCTGGCACGCACTTCGTTTAATCAAATAAGAGGC
CTTTTCCGACAAAAAGTCGCTGTTTGTCTAGCGAAAGATGCGCCTTTTTT
TGCTCTTGGTTGCTTTCCCGGCTCTCGTCTCTTCATTTGTCGGAATGTTA
CCCAGCCGGCACAAGCAGTCGCAAGGGCGGCAATCACAGCTTCGAATGAT
GGCAAAGCTCCCAAAGGTGAAAGGCGTTTCCTTGTTTACCACCGAGAGTC
TCGACATGCAAGTGTTATTCTCTGGTATCACATGCTGTCATGACAGGCAT
CTGCTAATATCGTTCGGACTCAGTGCTGCCCATCCGCCGTCTCACCTCGC
CCATTATGCAGGTGGCAGTAATGGTGAATGGCCTACCAGGCGCCATGGGT
AAGGAAGTTGCGGCAGCATGCTTGCGACGAGGATTGGAGGTGTGCTCTGT
TGGCCTAACGGGACCGCAAGTCGGTGAGTGaggctgaagaggaagagagg
cacAGGGAAACGAAGGCCCTTATAAAAGTAGAAAATATGGATTTGGAAAC
GCGTCTGTCTGCCCCCACTACAACTGTGGGGCAACTGTACATGCGGCCTG
ACAGAGATTTGTATGTGCGCATCCAACCTTCAGATGAGGAATGTGTGGAT
GTGGacgatggcgagggaggaaaaccGCAGACGATTCGGCTGGTCAAAGG
GCCGGTAACGGGCGCCGGAGACGAGGAATGCGATGCGAGGCTCCAAGGTA
GGCGAAGTTGGAGGTGTAGAGTAGGGTGGCACGTACAGTTAAAGTTACAG
TCCGCACTTTATCAAGTCGCTAAGCTTTGTTAATTCCTcaccctcgcccg
cccttcccttcaggCCTGGTAGCGGGCTACCGGGAGAGCGGGACACGTTT
AATTGCCGTCGACTACACGCACCCTACTGCTGTGAACCCCAACGGCATGC
TCTATGCTCGCCACAAAATGGACTTTGTCATGGTGGGCAACCCATCTCTG
TGCCTCTCCCATCCATCTCACgatcatccttcccttcgacAGTCTTCCTC
Gttatcccctccttcccggtccaatttctctcttcctccctcccttggtc
CGTATTCGTAGGGCACGACGGGCGGGGATCGAGATAAGCTTTTGAAGGAC
GTAGAAGAGGCAGGCATCTACGCCGTCATCGCCCCAAACATGGCCAAGCA
GATTGTCGCCTTGCAGGTcggggccgagggcgggggcgctcggaggaagg
agggtagtaCGGTCGTGAGATTGGTTGAGAAGGCACTTACTTAATTATTT
GACGCTATCTCCTCTTGTGTTGGTGGACAGGCGGGGCTGGAGACGATGGC
CGGGACTTTTCCGGGGGCCTTCGAGGGCTACAATCTTCGGGTACGgcttc
cttcacttccttcctccctccctttctccctcccgcttctgtTTCCCTTT
TACTTTAGCTTTGTCTTCAAGGTCTACCTTTTGTTTTTCCTCGACAAATC
GATCAGCGGACAAGCCTCTCTCGTGACCGTCTTAGGATCCTCTGTCCTTT
CTTAATTTTCTCCTATtacaccctccctctctccctcctatCCAGGTGGT
CGAGTCGCATCAAAGCAGCAAAGCGGACACCAGTGGGACCGCTAAGGCTT
TGATTGCCTCCTTCGGGACTCTGGTGGGCAAACCCTAtaaggtggaggac
gtgattgCCATGATCCGAGACAGAGAAGGACAGGTAAGGCCACGTCGGAC
GGGTGAATGATCGGAGACTGTGCAGACCGTGAGGTCATGAAACATTGATC
ATTTAGGCAATCATGAGATAAAAATACTGTGGAGCTCAATAGATAGTGGC
GTTGGGATAGCTTGGGATTCAGAGCCTGCGGAGTGAACGTGCATACGTGT
GCAGACAAAAAGTCTTACATTGAGCGAGGGTACGCCTGAAATTGATTGCG
AATGTGGACCGCGACAAGAGAGTTCATGGATACGTTTGAGACTATCTTAT
GTATGAAGCCCTCTCGTCTTGTTTGGAATTTCATGATCATTTTCCATTcc
attccttctttccctgaaCAATACCCTTTCTATCCTGCTTTCACTTGGAT
ATTGCAGCTAGAATTTGGCGTTCCCGAAGCGGGACTAGGCGGACACGCTT
TTCATACTTACCAGTTATTATCGCCAGATGGAAGGTGCGTTCCGCTTTTG
TAGATGTGTGGGTTTATACAAACTGATGAACACCTCAAGTCGACGGACTT
ACTATTAACTGCTTTCAGATGTTTTGAGTGTCGTAGCTTAAAGGGATGCC
TTAATTTGTTCCGCCtcgcacctccccctcgttccctccctccttctcac
tctGTAATTCTCCGTCTCGTTCCTGGGCTTTCCATTTCTCTGCAGTGTGG
AGTTTCAATTTCGCCACAACGTAGTTGGCCGGCGGATTTACGCGGAGGGT
ACTGTCGACGCTCTCACTTACCTGGCACAGCAGCACGGTCCCGATAAAAA
GGTTTTCAATATGGTTGACGTCTTAAAAGCCGGTGCCATGAAGTAGGGGA
AGGGCTAAAGTAtgcaggcaaggaaggagaggtgcaAAAAGAAGCAGTAA
AAAGGACCAGTAGCT back to topCoding sequence (CDS) from alignment at CM002456.1:19359..22373+ >rna624 ID=rna624|Name=rna624|organism=Nannochloropsis gaditana|type=CDS|length=4824bp|location=Sequence derived from alignment at CM002456.1:19359..22373+ (Nannochloropsis gaditana)
ATGCGCCTTTTTTTGCTCTTGGTTGCTTTCCCGGCTCTCGTCTCTTCATT
TGTCGGAATGTTACCCAGCCGGCACAAGCAGTCGCAAGGGCGGCAATCAC
AGCTTCGAATGATGGCAAAGCTCCCAAAGGTGGCAGTAATGGTGAATGGC
CTACCAGGCGCCATGGGTAAGGAAGTTGCGGCAGCATGCTTGCGACGAGG
ATTGGAGGTGTGCTCTGTTGGCCTAACGGGACCGCAAGTCGATGAGGAAT
GTGTGGATGTGGacgatggcgagggaggaaaaccGCAGACGATTCGGCTG
GTCAAAGGGCCGGTAACGGGCGCCGGAGACGAGGAATGCGATGCGAGGCT
CCAAGgCCTGGTAGCGGGCTACCGGGAGAGCGGGACACGTTTAATTGCCG
TCGACTACACGCACCCTACTGCTGTGAACCCCAACGGCATGCTCTATGCT
CGCCACAAAATGGACTTTGTCATGGGCACGACGGGCGGGGATCGAGATAA
GCTTTTGAAGGACGTAGAAGAGGCAGGCATCTACGCCGTCATCGCCCCAA
ACATGGCCAAGCAGATTGTCGCCTTGCAGGCGGGGCTGGAGACGATGGCC
GGGACTTTTCCGGGGGCCTTCGAGGGCTACAATCTTCGGGTACGgcttcc
ttcacttccttcctccctccctttctccctcccgcttctgtTTCCCTTTT
ACTTTAGCTTTGTCTTCAAGGTCTACCTTTTGTTTTTCCTCGACAAATCG
ATCAGCGGACAAGCCTCTCTCGTGACCGTCTTAGGATCCTCTGTCCTTTC
TTAAATGCGCCTTTTTTTGCTCTTGGTTGCTTTCCCGGCTCTCGTCTCTT
CATTTGTCGGAATGTTACCCAGCCGGCACAAGCAGTCGCAAGGGCGGCAA
TCACAGCTTCGAATGATGGCAAAGCTCCCAAAGGTGGCAGTAATGGTGAA
TGGCCTACCAGGCGCCATGGGTAAGGAAGTTGCGGCAGCATGCTTGCGAC
GAGGATTGGAGGTGTGCTCTGTTGGCCTAACGGGACCGCAAGTCGATGAG
GAATGTGTGGATGTGGacgatggcgagggaggaaaaccGCAGACGATTCG
GCTGGTCAAAGGGCCGGTAACGGGCGCCGGAGACGAGGAATGCGATGCGA
GGCTCCAAGgCCTGGTAGCGGGCTACCGGGAGAGCGGGACACGTTTAATT
GCCGTCGACTACACGCACCCTACTGCTGTGAACCCCAACGGCATGCTCTA
TGCTCGCCACAAAATGGACTTTGTCATGGGCACGACGGGCGGGGATCGAG
ATAAGCTTTTGAAGGACGTAGAAGAGGCAGGCATCTACGCCGTCATCGCC
CCAAACATGGCCAAGCAGATTGTCGCCTTGCAGGCGGGGCTGGAGACGAT
GGCCGGGACTTTTCCGGGGGCCTTCGAGGGCTACAATCTTCGGGTACGgc
ttccttcacttccttcctccctccctttctccctcccgcttctgtTTCCC
TTTTACTTTAGCTTTGTCTTCAAGGTCTACCTTTTGTTTTTCCTCGACAA
ATCGATCAGCGGACAAGCCTCTCTCGTGACCGTCTTAGGATCCTCTGTCC
TTTCTTAAATGCGCCTTTTTTTGCTCTTGGTTGCTTTCCCGGCTCTCGTC
TCTTCATTTGTCGGAATGTTACCCAGCCGGCACAAGCAGTCGCAAGGGCG
GCAATCACAGCTTCGAATGATGGCAAAGCTCCCAAAGGTGGCAGTAATGG
TGAATGGCCTACCAGGCGCCATGGGTAAGGAAGTTGCGGCAGCATGCTTG
CGACGAGGATTGGAGGTGTGCTCTGTTGGCCTAACGGGACCGCAAGTCGA
TGAGGAATGTGTGGATGTGGacgatggcgagggaggaaaaccGCAGACGA
TTCGGCTGGTCAAAGGGCCGGTAACGGGCGCCGGAGACGAGGAATGCGAT
GCGAGGCTCCAAGgCCTGGTAGCGGGCTACCGGGAGAGCGGGACACGTTT
AATTGCCGTCGACTACACGCACCCTACTGCTGTGAACCCCAACGGCATGC
TCTATGCTCGCCACAAAATGGACTTTGTCATGGGCACGACGGGCGGGGAT
CGAGATAAGCTTTTGAAGGACGTAGAAGAGGCAGGCATCTACGCCGTCAT
CGCCCCAAACATGGCCAAGCAGATTGTCGCCTTGCAGGCGGGGCTGGAGA
CGATGGCCGGGACTTTTCCGGGGGCCTTCGAGGGCTACAATCTTCGGGTA
CGgcttccttcacttccttcctccctccctttctccctcccgcttctgtT
TCCCTTTTACTTTAGCTTTGTCTTCAAGGTCTACCTTTTGTTTTTCCTCG
ACAAATCGATCAGCGGACAAGCCTCTCTCGTGACCGTCTTAGGATCCTCT
GTCCTTTCTTAAATGCGCCTTTTTTTGCTCTTGGTTGCTTTCCCGGCTCT
CGTCTCTTCATTTGTCGGAATGTTACCCAGCCGGCACAAGCAGTCGCAAG
GGCGGCAATCACAGCTTCGAATGATGGCAAAGCTCCCAAAGGTGGCAGTA
ATGGTGAATGGCCTACCAGGCGCCATGGGTAAGGAAGTTGCGGCAGCATG
CTTGCGACGAGGATTGGAGGTGTGCTCTGTTGGCCTAACGGGACCGCAAG
TCGATGAGGAATGTGTGGATGTGGacgatggcgagggaggaaaaccGCAG
ACGATTCGGCTGGTCAAAGGGCCGGTAACGGGCGCCGGAGACGAGGAATG
CGATGCGAGGCTCCAAGgCCTGGTAGCGGGCTACCGGGAGAGCGGGACAC
GTTTAATTGCCGTCGACTACACGCACCCTACTGCTGTGAACCCCAACGGC
ATGCTCTATGCTCGCCACAAAATGGACTTTGTCATGGGCACGACGGGCGG
GGATCGAGATAAGCTTTTGAAGGACGTAGAAGAGGCAGGCATCTACGCCG
TCATCGCCCCAAACATGGCCAAGCAGATTGTCGCCTTGCAGGCGGGGCTG
GAGACGATGGCCGGGACTTTTCCGGGGGCCTTCGAGGGCTACAATCTTCG
GGTACGgcttccttcacttccttcctccctccctttctccctcccgcttc
tgtTTCCCTTTTACTTTAGCTTTGTCTTCAAGGTCTACCTTTTGTTTTTC
CTCGACAAATCGATCAGCGGACAAGCCTCTCTCGTGACCGTCTTAGGATC
CTCTGTCCTTTCTTAAATGCGCCTTTTTTTGCTCTTGGTTGCTTTCCCGG
CTCTCGTCTCTTCATTTGTCGGAATGTTACCCAGCCGGCACAAGCAGTCG
CAAGGGCGGCAATCACAGCTTCGAATGATGGCAAAGCTCCCAAAGGTGGC
AGTAATGGTGAATGGCCTACCAGGCGCCATGGGTAAGGAAGTTGCGGCAG
CATGCTTGCGACGAGGATTGGAGGTGTGCTCTGTTGGCCTAACGGGACCG
CAAGTCGATGAGGAATGTGTGGATGTGGacgatggcgagggaggaaaacc
GCAGACGATTCGGCTGGTCAAAGGGCCGGTAACGGGCGCCGGAGACGAGG
AATGCGATGCGAGGCTCCAAGgCCTGGTAGCGGGCTACCGGGAGAGCGGG
ACACGTTTAATTGCCGTCGACTACACGCACCCTACTGCTGTGAACCCCAA
CGGCATGCTCTATGCTCGCCACAAAATGGACTTTGTCATGGGCACGACGG
GCGGGGATCGAGATAAGCTTTTGAAGGACGTAGAAGAGGCAGGCATCTAC
GCCGTCATCGCCCCAAACATGGCCAAGCAGATTGTCGCCTTGCAGGCGGG
GCTGGAGACGATGGCCGGGACTTTTCCGGGGGCCTTCGAGGGCTACAATC
TTCGGGTACGgcttccttcacttccttcctccctccctttctccctcccg
cttctgtTTCCCTTTTACTTTAGCTTTGTCTTCAAGGTCTACCTTTTGTT
TTTCCTCGACAAATCGATCAGCGGACAAGCCTCTCTCGTGACCGTCTTAG
GATCCTCTGTCCTTTCTTAAATGCGCCTTTTTTTGCTCTTGGTTGCTTTC
CCGGCTCTCGTCTCTTCATTTGTCGGAATGTTACCCAGCCGGCACAAGCA
GTCGCAAGGGCGGCAATCACAGCTTCGAATGATGGCAAAGCTCCCAAAGG
TGGCAGTAATGGTGAATGGCCTACCAGGCGCCATGGGTAAGGAAGTTGCG
GCAGCATGCTTGCGACGAGGATTGGAGGTGTGCTCTGTTGGCCTAACGGG
ACCGCAAGTCGATGAGGAATGTGTGGATGTGGacgatggcgagggaggaa
aaccGCAGACGATTCGGCTGGTCAAAGGGCCGGTAACGGGCGCCGGAGAC
GAGGAATGCGATGCGAGGCTCCAAGgCCTGGTAGCGGGCTACCGGGAGAG
CGGGACACGTTTAATTGCCGTCGACTACACGCACCCTACTGCTGTGAACC
CCAACGGCATGCTCTATGCTCGCCACAAAATGGACTTTGTCATGGGCACG
ACGGGCGGGGATCGAGATAAGCTTTTGAAGGACGTAGAAGAGGCAGGCAT
CTACGCCGTCATCGCCCCAAACATGGCCAAGCAGATTGTCGCCTTGCAGG
CGGGGCTGGAGACGATGGCCGGGACTTTTCCGGGGGCCTTCGAGGGCTAC
AATCTTCGGGTACGgcttccttcacttccttcctccctccctttctccct
cccgcttctgtTTCCCTTTTACTTTAGCTTTGTCTTCAAGGTCTACCTTT
TGTTTTTCCTCGACAAATCGATCAGCGGACAAGCCTCTCTCGTGACCGTC
TTAGGATCCTCTGTCCTTTCTTAA back to top
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