EWM30063.1, cds610 (CDS) Nannochloropsis gaditana

Overview
NameEWM30063.1
Unique Namecds610
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1526450..1526899 -
Alignment locationCM002455.1:1526143..1526361 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30063.1
Productprotein of unknown function DUF4149
Orig transcript idgnl|cribi|Naga_100170g7.5472.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1526450..1526899 -
CM002455.1supercontigCM002455.1:1526143..1526361 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR025423DUF4149
Homology
BLAST of EWM30063.1 vs. NCBI_GenBank
Match: gi|585112695|gb|EWM30063.1| (protein of unknown function DUF4149 [Nannochloropsis gaditana])

HSP 1 Score: 445.277 bits (1144), Expect = 4.277e-158
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0
Query:    1 MATYHALVVLASACMLIFLGTTTEATSTTHPYASFIHLASVGAWFGISFWVTFVAGVLLFKYLPRHQFGSVQGKIFPYYFALSLVLTSLALASWVHLEGGLDLLAAIKSGNEDGKVVACLGGAALLSALQLLVLGPCVTKAMEARNKKEKEEGFADTTSKVGRSPELLQLGAEFARMHGLSSTANLLVFLGALFQLYVLSAKHVTFATMAPTVAKATFWPWS 222
            MATYHALVVLASACMLIFLGTTTEATSTTHPYASFIHLASVGAWFGISFWVTFVAGVLLFKYLPRHQFGSVQGKIFPYYFALSLVLTSLALASWVHLEGGLDLLAAIKSGNEDGKVVACLGGAALLSALQLLVLGPCVTKAMEARNKKEKEEGFADTTSKVGRSPELLQLGAEFARMHGLSSTANLLVFLGALFQLYVLSAKHVTFATMAPTVAKATFWPWS
Sbjct:    1 MATYHALVVLASACMLIFLGTTTEATSTTHPYASFIHLASVGAWFGISFWVTFVAGVLLFKYLPRHQFGSVQGKIFPYYFALSLVLTSLALASWVHLEGGLDLLAAIKSGNEDGKVVACLGGAALLSALQLLVLGPCVTKAMEARNKKEKEEGFADTTSKVGRSPELLQLGAEFARMHGLSSTANLLVFLGALFQLYVLSAKHVTFATMAPTVAKATFWPWS 222          
BLAST of EWM30063.1 vs. NCBI_GenBank
Match: gi|553185858|ref|XP_005854323.1| (hypothetical protein NGA_0208801 [Nannochloropsis gaditana CCMP526] >gi|553188716|ref|XP_005854851.1| hypothetical protein NGA_0208802 [Nannochloropsis gaditana CCMP526] >gi|422294205|gb|EKU21505.1| hypothetical protein NGA_0208802 [Nannochloropsis gaditana CCMP526] >gi|422294738|gb|EKU22038.1| hypothetical protein NGA_0208801 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 442.58 bits (1137), Expect = 5.335e-157
Identity = 221/222 (99.55%), Postives = 221/222 (99.55%), Query Frame = 0
Query:    1 MATYHALVVLASACMLIFLGTTTEATSTTHPYASFIHLASVGAWFGISFWVTFVAGVLLFKYLPRHQFGSVQGKIFPYYFALSLVLTSLALASWVHLEGGLDLLAAIKSGNEDGKVVACLGGAALLSALQLLVLGPCVTKAMEARNKKEKEEGFADTTSKVGRSPELLQLGAEFARMHGLSSTANLLVFLGALFQLYVLSAKHVTFATMAPTVAKATFWPWS 222
            MATYHALVVLASACMLIFLGTTTEATSTTHPYASFIHLASVGAWFGISFWVTFVAGVLLFKYLPRHQFGSVQGKIFPYYFALSLVLTSLALASWVHLEGGLDLLAAIKSGNEDGKVVACLGGAALLSALQLLVLGPCVTKAMEARNKKEKEEGFADTTSKVGRSPELLQLGA FARMHGLSSTANLLVFLGALFQLYVLSAKHVTFATMAPTVAKATFWPWS
Sbjct:    1 MATYHALVVLASACMLIFLGTTTEATSTTHPYASFIHLASVGAWFGISFWVTFVAGVLLFKYLPRHQFGSVQGKIFPYYFALSLVLTSLALASWVHLEGGLDLLAAIKSGNEDGKVVACLGGAALLSALQLLVLGPCVTKAMEARNKKEKEEGFADTTSKVGRSPELLQLGAAFARMHGLSSTANLLVFLGALFQLYVLSAKHVTFATMAPTVAKATFWPWS 222          
BLAST of EWM30063.1 vs. NCBI_GenBank
Match: gi|827765883|gb|KLO20462.1| (hypothetical protein SCHPADRAFT_897741 [Schizopora paradoxa])

HSP 1 Score: 106.301 bits (264), Expect = 5.932e-25
Identity = 63/151 (41.72%), Postives = 85/151 (56.29%), Query Frame = 0
Query:   46 GISFWVTFVAGVLLFKYLPRHQFGSVQGKIFPYYFALSLVLTSLALASWVHLEGGLDLLAAIKS-GNEDGKVVACLGGAALLSALQLLVLGPCVTKAMEARNKKEKEEGFADTTSKVGRSPELLQLGAEFARMHGLSSTANLLVFLGALFQ 195
            G+SFWVTF  GV+ ++ LPR QFG++Q + FP YF +S+ L+S  LA+W       D++    S  N D      LG  A+L       +GP  +K M  R+K EKEEG A   +  G S E+  L  +FA++HG SS ANL  FL A F 
Sbjct:   31 GMSFWVTFFGGVIAYRALPRQQFGALQHRTFPVYFVISISLSSGLLAAWTLAHP--DIMTNYTSFRNPDVAQAYVLGTIAILQGFNQFWVGPLTSKTMFQRHKLEKEEGKA--YNDEGVSDEMKALNRKFAQLHGWSSLANLYAFLAAAFH 177          
BLAST of EWM30063.1 vs. NCBI_GenBank
Match: gi|168046008|ref|XP_001775467.1| (predicted protein [Physcomitrella patens] >gi|162673137|gb|EDQ59664.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 105.531 bits (262), Expect = 1.756e-24
Identity = 65/193 (33.68%), Postives = 97/193 (50.26%), Query Frame = 0
Query:   19 LGTTTEATSTTHPYASFIHLASVGAWFGISFWVTFVAGVLLFKYLPRHQFGSVQGKIFPYYFALSLVLTSLALASWVHLEGGLDLLAAIKSGNEDGKVVACLGGAALLSALQLLVLGPCVTKAMEARNKKEKEEGFADTTSKVGRS---------PELLQLGAEFARMHGLSSTANLLVFLGALFQLYVLSAK 202
            +G   +A  T       +HL S    FG + W +F+ G+++FK LPRHQFG++Q K+FP YF L  V  SL +++       L       +  E  ++VA LG +       LLV  P   K M+ R+K EK+ G     S+VGRS         PEL ++   F  +HG SS AN+  F G  F  + ++++
Sbjct:   28 IGAAEQAAVTVSGIVRLVHLLSFATAFGTAVWASFIGGIIMFKNLPRHQFGNLQAKMFPAYFKLLTVCCSLCVSAMATTHPWLS-----ATRRERLQIVA-LGVSLFTVVFNLLVFQPLTVKIMKQRHKIEKDSGIG---SEVGRSKNLEVAKSNPELAKINKTFGMVHGFSSLANIFCFGGLAFHSWYIASR 211          
BLAST of EWM30063.1 vs. NCBI_GenBank
Match: gi|1112950471|gb|OJT04766.1| (Transmembrane protein 205 [Trametes pubescens])

HSP 1 Score: 104.375 bits (259), Expect = 2.379e-24
Identity = 61/154 (39.61%), Postives = 86/154 (55.84%), Query Frame = 0
Query:   43 AW-FGISFWVTFVAGVLLFKYLPRHQFGSVQGKIFPYYFALSLVLTSLALASWVHLEGGLDLLAAIKSGNEDGKVVACLGGAALLSALQLLVLGPCVTKAMEARNKKEKEEGFADTTSKVGRSPELLQLGAEFARMHGLSSTANLLVFLGALFQ 195
            AW FG++ WVTFV GV+ FK LPR QFG++Q + FP YF +S+ L+S  L  W +    + L   +K  N D      L    L  A    V+GP  +K M  R++ EK+EG     ++ G S ++  L   FA++HG+SS AN+  FL  LF 
Sbjct:   27 AWLFGMTLWVTFVGGVIAFKTLPRQQFGTLQHRTFPVYFVISIALSSGLLGLWTYSHPTV-LTEYLKPTNADVAQAYALAVVLLTQASNHFVIGPLTSKTMFQRHRLEKQEG--KGYNEPGVSDDMKALNKTFAKLHGVSSLANMTAFLSLLFH 177          
BLAST of EWM30063.1 vs. NCBI_GenBank
Match: gi|636601377|ref|XP_008031847.1| (hypothetical protein TRAVEDRAFT_25694 [Trametes versicolor FP-101664 SS1] >gi|392571376|gb|EIW64548.1| hypothetical protein TRAVEDRAFT_25694 [Trametes versicolor FP-101664 SS1])

HSP 1 Score: 104.375 bits (259), Expect = 2.563e-24
Identity = 60/154 (38.96%), Postives = 85/154 (55.19%), Query Frame = 0
Query:   43 AW-FGISFWVTFVAGVLLFKYLPRHQFGSVQGKIFPYYFALSLVLTSLALASWVHLEGGLDLLAAIKSGNEDGKVVACLGGAALLSALQLLVLGPCVTKAMEARNKKEKEEGFADTTSKVGRSPELLQLGAEFARMHGLSSTANLLVFLGALFQ 195
            AW FG++ WVTFV GV+ FK LPR QFG++Q + FP YF +S+ L+S  L  W +    + L   +K  N D      L       A    V+GP  +K M  R++ EK+EG     ++ G S ++  L   FA++HG+SS AN+  FL  LF 
Sbjct:   27 AWLFGMTLWVTFVGGVIAFKTLPRQQFGTLQHRTFPVYFVISIALSSGLLGLWTYSHPTV-LTEYLKPTNADVAQAYALAAVVFAQASNHFVIGPLTSKTMFQRHRLEKQEG--KGYNEPGVSADMKALNKTFAKLHGVSSLANMTAFLSLLFH 177          
BLAST of EWM30063.1 vs. NCBI_GenBank
Match: gi|597967221|ref|XP_007359865.1| (hypothetical protein DICSQDRAFT_46861 [Dichomitus squalens LYAD-421 SS1] >gi|395334057|gb|EJF66433.1| hypothetical protein DICSQDRAFT_46861 [Dichomitus squalens LYAD-421 SS1])

HSP 1 Score: 104.375 bits (259), Expect = 3.072e-24
Identity = 63/160 (39.38%), Postives = 91/160 (56.88%), Query Frame = 0
Query:   45 FGISFWVTFVAGVLLFKYLPRHQFGSVQGKIFPYYFALSLVLTS--LALASWVHLEGGLDLLAAIKSGNEDGKVVACLGGAALLSALQLLVLGPCVTKAMEARNKKEKEEGFADTTSKVGRSPELLQLGAEFARMHGLSSTANLLVFLGALFQ-LYVLSA 201
            FG++ WVTF+ GV+ FK LPR QFG++Q + FP YF++S+ L+S  LAL +W H    L L   ++    D      L    L   +   V+GP  +K M  R++ EKEEG A   ++ G S ++  L   F ++HGLSS ANL  F   +F  LY+ +A
Sbjct:   30 FGMTLWVTFIGGVIAFKVLPRQQFGNLQHRTFPIYFSISIALSSGLLALWTWSH---PLVLTHYLQPAVADVSQAYTLASVLLSQVVNYFVIGPLTSKTMFQRHRLEKEEGKA--YNEPGVSEQMKSLNKTFGQLHGLSSLANLTAFFALVFHGLYIGNA 184          
BLAST of EWM30063.1 vs. NCBI_GenBank
Match: gi|302768106|ref|XP_002967473.1| (hypothetical protein SELMODRAFT_169057 [Selaginella moellendorffii] >gi|300165464|gb|EFJ32072.1| hypothetical protein SELMODRAFT_169057 [Selaginella moellendorffii])

HSP 1 Score: 100.908 bits (250), Expect = 1.059e-22
Identity = 60/174 (34.48%), Postives = 90/174 (51.72%), Query Frame = 0
Query:   36 IHLASVGAWFGISFWVTFVAGVLLFKYLPRHQFGSVQGKIFPYYFALSLVLTSLALASWVHLEGGLDLLAAIKSGNEDGKV-VACLGGAALLSALQLLVLGPCVTKAMEARNKKEKEE------GFADTTSKVGRSPELLQLGAEFARMHGLSSTANLLVFLGALFQLYVLSAK 202
            +HL      +G S WVTF+ G+++FK+LPRHQFG++Q K+FP YF +  V ++  +       G   LL    S     K+ +  L  + + + L LLV  P   K M+ R+K E+EE      G +       R+P L ++  +F  +HGLSS ANL  F G     + L+ K
Sbjct:   47 VHLLGFATAWGTSLWVTFIGGIIMFKHLPRHQFGNLQSKLFPVYFEMLAVCSTACI-------GAFSLLHPWGSSTSAEKMQLGALVFSLMATLLNLLVFEPMTIKTMKERHKIEREESIGEEVGLSKNKEAAKRNPALAKINKKFGMVHGLSSLANLFCFGGFAVHSWYLAGK 213          
BLAST of EWM30063.1 vs. NCBI_GenBank
Match: gi|514810262|ref|XP_004979942.1| (PREDICTED: transmembrane protein 205-like isoform X1 [Setaria italica] >gi|944231414|gb|KQK95800.1| hypothetical protein SETIT_026851mg [Setaria italica])

HSP 1 Score: 100.523 bits (249), Expect = 1.272e-22
Identity = 62/176 (35.23%), Postives = 95/176 (53.98%), Query Frame = 0
Query:   33 ASFIHLASVGAWFGISFWVTFVAGVLLFKYLPRHQFGSVQGKIFPYYFALSLVLTSLALASWVHLEGGLDLLAAIKSGNEDGKVVACLGGAALLSALQLLVLGPCVTKAMEARNKKEK------EEGFADTTSKVGRSPELLQLGAEFARMHGLSSTANLLVFLGALFQLYVLSAK 202
            A  +HL +    +G   WVTF+ G+++FKYLPRHQFGS+QGK+FP YF L    + +++A++ +L       A+     + G +++ LG     +   LLV  P   + M  R+K EK      E G++       RSP L+ +  +F  +HGLSS AN+L F       + LS+K
Sbjct:   40 ARLVHLLAFATAWGAGLWVTFIGGIVMFKYLPRHQFGSLQGKMFPAYFMLISACSVISVAAFAYLHPWKT--ASTIERYQLGFLLSALG----CNLSNLLVFMPMTVEMMMKRHKMEKDLGIGSEVGYSKNAETAKRSPALVAMNRKFGMIHGLSSLANILSFGSLAMHSWYLSSK 209          
BLAST of EWM30063.1 vs. NCBI_GenBank
Match: gi|648171230|gb|KDR84846.1| (hypothetical protein GALMADRAFT_233266 [Galerina marginata CBS 339.88])

HSP 1 Score: 99.7525 bits (247), Expect = 1.304e-22
Identity = 57/146 (39.04%), Postives = 81/146 (55.48%), Query Frame = 0
Query:   43 AW-FGISFWVTFVAGVLLFKYLPRHQFGSVQGKIFPYYFALSLVLTSLALASWVHLEGGLDLLAAIKSGN-EDGKVVACLGGAALLSALQLLVLGPCVTKAMEARNKKEKEEGFADTTSKVGRSPELLQLGAEFARMHGLSSTANL 186
            AW FG+S W++F  GV+ F+ LPRHQFGS+Q KIFP YF  S+VL++  L +W+      D++  +   N  D      L            V+GP  ++ M  R+K EKEEG   T ++ G S ++  L   F  +HG+SS ANL
Sbjct:   27 AWLFGMSIWISFFGGVIAFQTLPRHQFGSLQHKIFPIYFVQSIVLSASLLGTWIFKHP--DVMMHLARPNVADVAQAYALATVLFSQGFNYFVIGPMTSRTMFQRHKLEKEEG--KTYNEPGVSADMKALNRRFGMLHGISSLANL 168          
The following BLAST results are available for this feature:
BLAST of EWM30063.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112695|gb|EWM30063.1|4.277e-158100.00protein of unknown function DUF4149 [Nannochlorops... [more]
gi|553185858|ref|XP_005854323.1|5.335e-15799.55hypothetical protein NGA_0208801 [Nannochloropsis ... [more]
gi|827765883|gb|KLO20462.1|5.932e-2541.72hypothetical protein SCHPADRAFT_897741 [Schizopora... [more]
gi|168046008|ref|XP_001775467.1|1.756e-2433.68predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1112950471|gb|OJT04766.1|2.379e-2439.61Transmembrane protein 205 [Trametes pubescens][more]
gi|636601377|ref|XP_008031847.1|2.563e-2438.96hypothetical protein TRAVEDRAFT_25694 [Trametes ve... [more]
gi|597967221|ref|XP_007359865.1|3.072e-2439.38hypothetical protein DICSQDRAFT_46861 [Dichomitus ... [more]
gi|302768106|ref|XP_002967473.1|1.059e-2234.48hypothetical protein SELMODRAFT_169057 [Selaginell... [more]
gi|514810262|ref|XP_004979942.1|1.272e-2235.23PREDICTED: transmembrane protein 205-like isoform ... [more]
gi|648171230|gb|KDR84846.1|1.304e-2239.04hypothetical protein GALMADRAFT_233266 [Galerina m... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna610rna610Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications