rna593, rna593 (mRNA) Nannochloropsis gaditana

Overview
Namerna593
Unique Namerna593
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1300
Alignment locationCM002455.1:1480639..1481248 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100173g1.4676.mrna
Orig protein idgnl|cribi|Naga_100173g1.4676
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1480639..1481248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100173g1gene571Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna593rna593-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30070.1cds593Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna593 ID=rna593|Name=rna593|organism=Nannochloropsis gaditana|type=mRNA|length=1300bp
CTCTTCCTCCCTCCACTCCCCGCCCCTCCAGGCAATCAACGCCGTGGTCG
GGGGTTTGCGCGGGGGGAGGTACCACGGGCATGCCCTCCACAAGGATATG
CACGCGGACGTGAGCGCCCTGGCGATGAGGAGGAGGGAGGAGGAAGCGGC
AGAGGAGGTAACGTGGGGCGGGCGAAGGGCGGGGGAACAGGAGCGACACA
GGGTTTTGGAGCACGCGCGGAAGAGAGAGAGCATCATCCGGCGGGTTCGG
CCTCACTCCTGCTTTTTTTCCCACCCGCCTTGTCTCCCATGCAGGCGAGC
GAAGCCCTTGAAAGCGAGGATAGTGAGATAGAGAGCGACTTATACTCGAG
CGAGGAGGAGTCGCCACATATGAGCCTGGTGCAGTCTTGGCTTGCGATGA
TCAGAGGTGACGAGGACGATGACGAGGACTTTGGGGAGGAGGAGGAGGAA
GAGGAAGAAGAGGAGGAGGACGAGGAGGATGAGGAGGAGGACGAGGAGGA
GGAGGAGGAGGAAGAGGAGGGAGGTGAAGATGATGATCACGAAGGAGAGG
AAGAAGATTTTGAGGGAGAAGAGGAGGAGGAGGAGGAGGAGGCAGGGGAG
GGGGAGGAAGGGGAGGAGGACGGGAGCGGTGGCGTGGAAGTGATGTCAGA
GAGCGAGGGAGGAGACGACTAGGGAGCCGGAACTTACGAGAAAGAGAAGA
GACCAGAACGCAGCACCGAACAAAGCAGCGCATGGTGGAAAGCAAAGGGA
TGAGGTAAGTGCCTGGGAGGAAGGCAAGAGTGAGACGGGGCGAGGCGATG
GGAAGAAGCGGGTCCTGATGAGGGAAGGGGAGGGAGGAGGAAACGCAGGC
AGGGGGTGTACGAAATGAGCGCCAAGATGATAGAAGGCGAGAGGCTGGCG
TGTCAAGATCGACAACGTGGAGCCGGCGGGAGGGCTTTGGGGAAGAAGAG
AGCTGAAGCAAAGGCTTGAGAGGGGGAGGAGATGCGGCAGAACTATCAGA
AAGGGAGAGGAAGAATGAAAGGTACTGCTCATGGAGGCAACCTTAAGAAA
GAAATAAATTAGGACCGAAAAATCGAGCAGGGGAGAAAAGTAGAGAAATG
TGACGTGACTCGCAAAAAGTAGCGCCAGCGCTACGCTGAATGGAGAAAGT
GTGCGTCGCCTCAGGACGACAAGAAGTCCCGTGTCGTCCCCCTCCGTTCT
CCTTCTCCCCAAGACTTTGACACTTGCCAAGGATCCCTCGCTCCCATGGC
TTCGGCGGGCGAGGAAAACGAAAGCATACAGTTTGAAGTAAAGAGCCCTT
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protein sequence of rna593

>rna593-protein ID=rna593-protein|Name=rna593|organism=Nannochloropsis gaditana|type=polypeptide|length=136bp
MSMPVERPKNELEGELLPSSPHEQQELEIPPQRQAPTPAAASTTSLAVAR
AAAKTPPMTDIDDQEHNCRTLASDEDVDRKLWGMRPPSSTSWARLSGAAD
LLSTIFRFLQLRELNAIACCGSHACMLNGGCTRGGG
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mRNA from alignment at CM002455.1:1480639..1481248-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna593 ID=rna593|Name=rna593|organism=Nannochloropsis gaditana|type=mRNA|length=610bp|location=Sequence derived from alignment at CM002455.1:1480639..1481248- (Nannochloropsis gaditana)
ATGTCGATGCCTGTTGAGAGACCGAAAAATGAATTAGAAGGTGAACTGCT
GCCTTCATCGCCACACGAGCAGCAGGAACTAGAAATTCCACCACAACGAC
AAGCGCCCACTCCAGCCGCCGCCTCAACAACATCACTGGCTGTAGCACGG
GCAGCAGCAAAAACGCCACCAATGACAGACATCGATGACCAGGAGCATAA
TTGTCGGACGCTTGCTTCTGATGAAGATGTCGACCGTAAGCTGTGGGGTA
TGCGTCCGCCGTCCTCAACCTCCTGGGCCAGATTATCCGGGGCGGCAGAT
TTACTCTCCACCATTTTTCGCTTTTTACAATTGCGGGAATTGAATGCCAT
GTACGTTTTCTGCCTTTGCAATTAGGTGGTGCAACTATTTTGGTGTAATG
GTCGCGTCGAGTCGTTTCCCATTTCACCTCGTTCCTCATTCCTTCTCCTC
CTCGCTCACCTTCTTCGTCCCCTTCCCACCCTCCTCTGACGTGCAGCGCA
TGCTGTGGCTCGCACGCCTGCATGCTGGTAGCTAGAGACGAGGATGTATG
GAAAGAGATAGCGCTGAGGATGTGGGGAAGAATGGTGGATGCACGCGAGG
AGGTGGTTGA
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Coding sequence (CDS) from alignment at CM002455.1:1480639..1481248-

>rna593 ID=rna593|Name=rna593|organism=Nannochloropsis gaditana|type=CDS|length=1233bp|location=Sequence derived from alignment at CM002455.1:1480639..1481248- (Nannochloropsis gaditana)
AATGGTGGATGCACGCGAGGAGGTGGTTGACGCATGCTGTGGCTCGCACG
CCTGCATGCTGATGTCGATGCCTGTTGAGAGACCGAAAAATGAATTAGAA
GGTGAACTGCTGCCTTCATCGCCACACGAGCAGCAGGAACTAGAAATTCC
ACCACAACGACAAGCGCCCACTCCAGCCGCCGCCTCAACAACATCACTGG
CTGTAGCACGGGCAGCAGCAAAAACGCCACCAATGACAGACATCGATGAC
CAGGAGCATAATTGTCGGACGCTTGCTTCTGATGAAGATGTCGACCGTAA
GCTGTGGGGTATGCGTCCGCCGTCCTCAACCTCCTGGGCCAGATTATCCG
GGGCGGCAGATTTACTCTCCACCATTTTTCGCTTTTTACAATTGCGGGAA
TTGAATGCCATAATGGTGGATGCACGCGAGGAGGTGGTTGACGCATGCTG
TGGCTCGCACGCCTGCATGCTGATGTCGATGCCTGTTGAGAGACCGAAAA
ATGAATTAGAAGGTGAACTGCTGCCTTCATCGCCACACGAGCAGCAGGAA
CTAGAAATTCCACCACAACGACAAGCGCCCACTCCAGCCGCCGCCTCAAC
AACATCACTGGCTGTAGCACGGGCAGCAGCAAAAACGCCACCAATGACAG
ACATCGATGACCAGGAGCATAATTGTCGGACGCTTGCTTCTGATGAAGAT
GTCGACCGTAAGCTGTGGGGTATGCGTCCGCCGTCCTCAACCTCCTGGGC
CAGATTATCCGGGGCGGCAGATTTACTCTCCACCATTTTTCGCTTTTTAC
AATTGCGGGAATTGAATGCCATAATGGTGGATGCACGCGAGGAGGTGGTT
GACGCATGCTGTGGCTCGCACGCCTGCATGCTGATGTCGATGCCTGTTGA
GAGACCGAAAAATGAATTAGAAGGTGAACTGCTGCCTTCATCGCCACACG
AGCAGCAGGAACTAGAAATTCCACCACAACGACAAGCGCCCACTCCAGCC
GCCGCCTCAACAACATCACTGGCTGTAGCACGGGCAGCAGCAAAAACGCC
ACCAATGACAGACATCGATGACCAGGAGCATAATTGTCGGACGCTTGCTT
CTGATGAAGATGTCGACCGTAAGCTGTGGGGTATGCGTCCGCCGTCCTCA
ACCTCCTGGGCCAGATTATCCGGGGCGGCAGATTTACTCTCCACCATTTT
TCGCTTTTTACAATTGCGGGAATTGAATGCCAT
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Synonyms
Publications