rna453, rna453 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna453
Unique Name	rna453
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2092
Alignment location	CM002455.1:1127840..1131261 +

Link to JBrowse

Properties


Property Name	Value
Product	RAP domain protein
Orig transcript id	gnl\|cribi\|Naga_100003g28.1761.mrna
Orig protein id	gnl\|cribi\|Naga_100003g28.1761
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1127840..1131261 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g28	gene437	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna453	rna453-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30244.1	cds453	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1127840..1131261+
coding sequence from alignment at CM002455.1:1127840..1131261+

mRNA sequence

>rna453 ID=rna453|Name=rna453|organism=Nannochloropsis gaditana|type=mRNA|length=2092bp
AACGGTCTGAATGAGATGGGATTAAGTATGCACGCCAACTTGATGCTGTC
CAACATCAGATAAAGATTGTCTTATCACACCATGATCAACAACGTTTTGA
AACAGCCTGTATTTCCATTATCGTGTTATTCACACAGCTCTTACCTTCAT
GAGGGCATGTTCTTCCCCCTCTGGGGCCGTCCCGTGCTCGTCGAAGAGAT
ATAGATTCATGGCTCCCACAGAGGAGCCTCCAATCGTTGTCATCGGCTCT
GGACCTTGTGGCTTAGGCGCTGCACATCGTTTGCATGAGATTGGGGTAAA
AAACTTTATCGTATTGGAGGCTGGCTCCGAACCGGGTGGCCTGTCAGTAA
CGGCAACAGACGAGGAGGGCTTCCTTTGGGATATGGGAGGCCATGTGATC
TTCTCTCACTATAATTACTTTGACAAAGTGTTGGACCACATTGTAAGAGA
CTGGTGTAAGCGAGAGCGTGTGAGCTATATCTGGCAAAAAGGTCGATTTA
TTCCCTATCCTTTTCAGAACAATATCCACCGCTTGTCCGCGGAAGACTTT
CACGAGTGCATAGACGGCCTCGTTGAAATGCAGCAGCAGAATATATCACG
CCTGACTAAGCCACGTACATTTCTCGAATGGCTTCAAAATAATTTCGGCC
GAGGCATTGTGAACCTTTTTATGGCACCGTATAACCGCAAGGTTTGGGGT
TACGAACCAAGTGAGATGAACGCTGCCTGGATGGAGGATCGGGTTGCTAC
CGTGGATTTGACCCGTATCAAGGAGCACAAAGGGAACGGTACCAACGACA
CCACTTGGGGTCCCAATCACACCTTTCGCTTCCCGCTGCGAGGAGGAACA
GGCTTCATCTGGCGGAGGATCTACGAGGGAATTGACCTGAGCAAGTTTAG
ATTCAATTCAGAGATTGTGGCCGTGGACGCTGACAGGAAGCTACTTAGGC
TCGCGGACGGATCGGACTTGCCGTACAGAAATTTGATCAGCACGATGCCG
TTGGATCGACTGTGCGGGCTCGTGGTGGGGAGAGGCCTAGAAGACTTGCC
TGCCCTCGTGCCACGGTTCCGATACTCCTCCACCCATGTCGTTGGGATCG
GGGTGGCCGGCCAACCGCCCGCTCACTTGCAAGGCCAGTGTTGGATGTAT
TTCCCCGAAGACGATTGTCCATTTTACCGGGTCACAGTCTTTTCGAATTA
TTCGCCCTATAACGTTCCCATGCCGGGTCAGCAATGGTCCCTCATGGCGG
AGGTCTGCGAGACGGCGGCGCGGCCCGTGGATCCCTCTAACATCGTCGAC
TCGGTCTTGCAAGGCTTCTACACTGTAAAGCTTCTCAACGTAGAACGGGA
CAAGGTCATTTCTCGTTTCCATCGTCGACTGGAGTACGGGTATCCGACCC
CTTTTCTGGAAAGGGAGGAGGTTTGCGGGCGGGCCCTGGAGGCACTGGAG
GCAAAAGACATCAAATCGCGCGGCCGCTTCGGGGCTTGGAAATACGAAGT
CAGCAACCAGGATCACAGCATGATGCAGGGTGTGGAGGCGGTGGACGCCA
TTGTGATGGGCGCTGAGGAGACAACCGTGCGGTTGCCTGGGGTAGTGAAT
TCCAAAGCCTGGAAGAAGGCACAGAGCTGCGCCCGTCGATGCCATCAAGC
GGTCGAGCGAGGTCAGAAGAAAAAGGGATTAGAAAAAAGAAAAGGACAAG
AGAGAGGTGACAGGAAATTGCGGTACTACGATCCCTTGGCTCTGACGGTG
CTCTTGAAGAAGGGTTGGTCGATGGGCAAGGCAGAGTCCGCGGCGTTGAT
AGACACGTGCGAGACAGCGCACTTTAACGATCCGGGCATCACGGGACGTG
AGACATGTCACCGTCAGGGGGGGAGTGAGGCGATCGGCTCCACGGAGACA
AAGGACAGAATCGATGGCGATAAGGAGGGCAAGGGTGGGAAGAGAAGGCC
AAGCCCCTCGAATGTGGCGCCAACCGCCGCATGAGCTCAGCGAAGAACTT
CCATGAAGAACCACGGATGACTCAAATTTCAAAGTGCTTAAGACTACGAA
TTACATGGTCCCCTATGCCCCCAAAAAGGAAGTCTCGACAGT

protein sequence of rna453

>rna453-protein ID=rna453-protein|Name=rna453|organism=Nannochloropsis gaditana|type=polypeptide|length=995bp
MQARHCAAMPRRSRHKNSCGASGASCPRRREGPIAAIPSAFPLHVASSLL
LLFFVLQCVQAWVVPVKYYKHECLNPGLTKISPSRRRGSGVSPLTTSRAT
AASWATTRDGYGAGHTEGEGADDTASGIKGIGGVNRRARSRPGAAMEEVR
PPREARKPSWKPRGKSQAHASTGPSRSKPNLQRPSNPRQPYNADYHRPSG
EWNRGKQITSFLRNAGDEGGHHGIMEVVTSHLSELNSVHCTMVLNRLSKT
PPSERDTVLQSSGFGTLMERVEQVMEQFSNRDIAQAAISLARFRDPRRMG
QWQGLIRALQDKAKMSLTEMTTKELAMIVNAFANLPEPPGPAYWDAFSQI
FLEKASDFDKQGLSMVINGMSKILYRPPTEVLHAVEALTLDLMETCNTQE
LANILNGFGKLDHVPSSDYLARFELLSQPKLPQFQPQELSMTFNAMSRIG
YRPSDSYLQAFEAACIQALPQFKTQESAMTINAFTKMADFVPSPAFFAEV
ERCVIQKAGQHRAQEVANTIHGLGRLGYDPSPRFVEAFAEHGMVLMDKMK
TQELGNLINGLSKMTYRPAPAFFLRFMDVSQPKLRYFTTQELSNVVNGLM
RLGCKPDEEYLRATVQMAARHLSEYKEQELACLFHAYGRMLFFPGTGFME
AYEMEFGRRVASGVNSQALAMTLNAFNRLNWKPSPRLLLEMEKSLECATC
EGLIFGAELAQAVNGLANLNHTPGRSFLAAFKNVILEQKNYVDLSTIAVI
LWSLSALDPARMKGFYTEMVEVACRRLEGEQPDILPTSFSGERSSMYYTS
FNEVVPTIGGESLEPPMVMCVRQLLQTCRYLTMLANPIDPALFQRFSSLL
EKKWAEIQREKYEVHTSYFHRDVLAVVTKSLGLRCDIEVEDEAYTLDMVI
YPTDGGLPVVVEADGPHHFFRNQPDEAMGFTVFKHRLLQGRSDRWRAVVS
VSQAEWQRAKESDSQRGRTALLIEKLRGAGLDLEEVTEAVVDPPI

mRNA from alignment at CM002455.1:1127840..1131261+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna453 ID=rna453|Name=rna453|organism=Nannochloropsis gaditana|type=mRNA|length=3422bp|location=Sequence derived from alignment at CM002455.1:1127840..1131261+ (Nannochloropsis gaditana)
CCGTGGACCTTATTATTATCGTTGAAAACTGGCCCGAAACTCAAAATAAA
TGATGAAGTAATCCGTCAAGGTAGCATTTTGTAACGTTTGACCGATGAAA
TGTCTCTAATGGTGATTTTAACTTCTTCGCTGCTCACTGAGCGCTCAATG
TACCCCAGCCGCTATCTTTCCGCCGTAGCTCGTCCTTGAAGGCAACTCAT
CATGTCTCATTTCATCGACGCATCCACAATTCTCTGATATCATGCAGGCA
AGACACTGCGCTGCCATGCCGCGACGATCAAGACATAAAAACAGTTGCGG
TGCCAGCGGGGCGTCTTGCCCtagaaggagagagggaccaATTGCAGCCA
TACCATcggcctttcccctccatgttgcttcctccctcctcctactcTTT
TTTGTGCTCCAATGCGTCCAGGCATGGGTCGTACCAGTTAAATACTATAA
ACATGAATGTTTGAATCCCGGTTTAACGAAGATCAGTCCGTcaagaagac
ggggaagcGGCGTTTCTCCATTGACGACGTCTCGAGCGACAGCAGCCTCC
TGGGCGACTACTCGCGATGGCTACGGTGCGGGACACactgagggagaagg
cgcagATGACACCGCCAGTGGTATCAAAGGCATTGGTGGTGTGAATCGTC
GTGCCAGATCCAGGCCTggggcggcgatggaggaagtgcggCCACCACGA
GAGGCAAGGAAACCATCTTGGAAACCGCGAGGGAAGAGCCAGGCGCATGC
CTCGACCGGGCCAAGTCGGAGCAAGCCAAATCTACAGCGGCCTTCCAATC
CACGGCAGCCTTACAATGCGGATTATCATCGTCCCAGTGGGGAATGGAAT
CGAGGGAAACAAATAACGAGCTTTTTGCGCAACgcaggggacgagggcgg
gcatCACGGAATaatggaggtggtgacgtCCCACTTGAGTGAACTCAACT
CCGTGCATTGCACCATGGTATTGAACCGTTTAAGCAAAACGCCGCCTTCC
GAACGTGATACTGTGCTGCAGTCTTCCGGCTTCGGGACCTTGATGGAGCG
GGTGGAGCAGGTAATGGAGCAATTTAGCAATCGTGACATCGCTCAAGCGG
CGATCAGCTTGGCCCGCTTCCGTGACCCGCGTAGAATGGGACAATGGCAG
GGTCTGATCCGGGCCTTGCAAGACAAGGCAAAAATGTCGCTGACGGAGAT
GACCACCAAGGAGCTGGCCATGATTGTGAATGCCTTTGCCAACCTGCCGG
AGCCCCCAGGGCCTGCCTACTGGGACGCATTCTCCCAGATTTTTTTGGAG
AAGGCCAGCGACTTCGACAAGCAAGGCCTCTCCATGGTCATAAACGGCAT
GAGCAAGATCCTCTACCGCCCGCCCACGGAGGTGCTTCATGCCGTGGAGG
CCCTCACCCTGGACTTGATGGAGACGTGCAACACCCAAGAGCTGGCGAAC
ATATTGAACGGTTTCGGCAAGCTGGACCACGTCCCGTCTTCTGACTATCT
GGCCCGCTTTGAACTTCTCTCCCAGCCCAAACTTCCTCAATTCCAGCCCC
AGGAGCTCTCAATGACTTTCAATGCCATGAGTCGCATCGGCTACCGTCCA
AGTGACAGCTATTTGCAGGCGTTCGAAGCCGCGTGCATCCAAGCCTTACC
CCAATTCAAGACCCAAGAGTCGGCCATGACCATCAATGCCTTCACCAAAA
TGGCGGACTTTGTTCCGTCCCCTGCTTTCTTCGCCGAAGTAGAGCGTTGT
GTCATTCAAAAAGCTGGCCAGCACCGCGCACAAGAAGTGGCTAATACCAT
CCACGGGCTGGGCCGCCTAGGCTATGACCCGTCTCCACGTTTTGTGGAGG
CCTTTGCTGAGCACGGAATGGTCTTAATGGACAAAATGAAGACGCAAGAA
CTCGGCAATTTGATCAACGGCTTGAGCAAGATGACGTACCGGccggcccc
tgccttcttcttgcgGTTCATGGACGTGTCCCAGCCAAAATTGCGCTACT
TCACCACACAGGAATTGTCGAACGTCGTGAATGGTCTGATGCGCCTGGGG
TGCAAGCCGGATGAAGAGTACCTGCGGGCGACGGTGCAGATGGCGGCCAG
GCACTTGTCGGAGTACAAGGAGCAAGAGCTCGCTTGCTTGTTCCACGCCT
ACGGCCGcatgctcttctttcccgggACGGGCTTTATGGAGGCATATGAG
ATGGAGTTTGGACGGCGAGTGGCCTCTGGAGTGAATAGTCAAGCCCTGGC
CATGACGTTGAACGCCTTCAACCGCCTGAATTGGAAACCTTCTCCACGGC
TCCTGCTTGAGATGGAAAAGTCGCTTGAATGTGCCACCTGCGAAGGACTC
ATTTTCGGGGCCGAGCTCGCGCAAGCCGTCAATGGCTTGGCTAATCTAAA
CCACACTCCGGGGCGCTCATTCCTGGCGGCATTCAAGAACGTCATCCTCG
AACAAAAGAATTACGTGGACCTGTCGACGATCGCCGTCATACTCTGGTCG
CTCTCCGCCCTCGACCCGGCCCGCATGAAAGGGTTCTACacggagatggt
ggaggtAGCCTGTCGCCGGCTTGAAGGCGAGCAGCCTGATATCTTGCCAA
CCTCTTTCTCAGGCGAGCGCTCGTCCATGTACTACACCTCGTTCAACGAG
GTGGTTCCGACGATCGGGGGCGAGTCCTTGGAGCCGCCCATGGTCATGTG
TGTCCGACAACTTCTGCAGACATGCCGCTACTTGACAATGCTGGCCAACC
CCATCgatcccgcccttttccaacgtttctcttctcttctcgAGAAGAAG
TGGGCCGAGATCCAGCGAGAGAAGTACGAAGTGCACACATCTTATTTCCA
CCGGGACGTCTTGGCTGTTGTTACGAAAAGCTTGGGCTTGCGCTGCGACA
TCGAAGTGGAGGATGAAGCTTACACACTGGACATGGTCATCTACCCGACG
GACGGAGGATTGCCTGTGGTTGTGGAGGCTGACGGTCCGCACCACTTTTT
TCGCAATCAGCCGGACGAGGCCATGGGCTTCACCGTGTTCAAGCACAGGC
TCTTACAAGGCCGCTCGGACAGATGGAGGGCTGTTGTGTCGGTGTCCCAA
GCGGAGTGGCAAAgggcgaaggaaagcgaTTCTCAACGGGGACGGACGGC
CCTGCTGATTGAGAAGCTGAGGGGAGCTGGCTtggacttggaggaggtga
cagAGGCGGTAGTAGACCCGCCCATTTGAGGAAGAACAAGGGAGAATCGA
AAGTTGAGAGCCAAAAAATGAGCAATGACGAGAAAATGTGTAATTAACTG
TTAAGAGCGAGATAACTGTCGACCATTTGGGGTCGCAAAAGCCGCGTACG
CGTTCAAGCACGAAATGACAGTCCGGATGCCATAATGAACAAAATACTGA
CCCAAAAAATGATCACGTCTGA

Coding sequence (CDS) from alignment at CM002455.1:1127840..1131261+

>rna453 ID=rna453|Name=rna453|organism=Nannochloropsis gaditana|type=CDS|length=2988bp|location=Sequence derived from alignment at CM002455.1:1127840..1131261+ (Nannochloropsis gaditana)
ATGCAGGCAAGACACTGCGCTGCCATGCCGCGACGATCAAGACATAAAAA
CAGTTGCGGTGCCAGCGGGGCGTCTTGCCCtagaaggagagagggaccaA
TTGCAGCCATACCATcggcctttcccctccatgttgcttcctccctcctc
ctactcTTTTTTGTGCTCCAATGCGTCCAGGCATGGGTCGTACCAGTTAA
ATACTATAAACATGAATGTTTGAATCCCGGTTTAACGAAGATCAGTCCGT
caagaagacggggaagcGGCGTTTCTCCATTGACGACGTCTCGAGCGACA
GCAGCCTCCTGGGCGACTACTCGCGATGGCTACGGTGCGGGACACactga
gggagaaggcgcagATGACACCGCCAGTGGTATCAAAGGCATTGGTGGTG
TGAATCGTCGTGCCAGATCCAGGCCTggggcggcgatggaggaagtgcgg
CCACCACGAGAGGCAAGGAAACCATCTTGGAAACCGCGAGGGAAGAGCCA
GGCGCATGCCTCGACCGGGCCAAGTCGGAGCAAGCCAAATCTACAGCGGC
CTTCCAATCCACGGCAGCCTTACAATGCGGATTATCATCGTCCCAGTGGG
GAATGGAATCGAGGGAAACAAATAACGAGCTTTTTGCGCAACgcagggga
cgagggcgggcatCACGGAATaatggaggtggtgacgtCCCACTTGAGTG
AACTCAACTCCGTGCATTGCACCATGGTATTGAACCGTTTAAGCAAAACG
CCGCCTTCCGAACGTGATACTGTGCTGCAGTCTTCCGGCTTCGGGACCTT
GATGGAGCGGGTGGAGCAGGTAATGGAGCAATTTAGCAATCGTGACATCG
CTCAAGCGGCGATCAGCTTGGCCCGCTTCCGTGACCCGCGTAGAATGGGA
CAATGGCAGGGTCTGATCCGGGCCTTGCAAGACAAGGCAAAAATGTCGCT
GACGGAGATGACCACCAAGGAGCTGGCCATGATTGTGAATGCCTTTGCCA
ACCTGCCGGAGCCCCCAGGGCCTGCCTACTGGGACGCATTCTCCCAGATT
TTTTTGGAGAAGGCCAGCGACTTCGACAAGCAAGGCCTCTCCATGGTCAT
AAACGGCATGAGCAAGATCCTCTACCGCCCGCCCACGGAGGTGCTTCATG
CCGTGGAGGCCCTCACCCTGGACTTGATGGAGACGTGCAACACCCAAGAG
CTGGCGAACATATTGAACGGTTTCGGCAAGCTGGACCACGTCCCGTCTTC
TGACTATCTGGCCCGCTTTGAACTTCTCTCCCAGCCCAAACTTCCTCAAT
TCCAGCCCCAGGAGCTCTCAATGACTTTCAATGCCATGAGTCGCATCGGC
TACCGTCCAAGTGACAGCTATTTGCAGGCGTTCGAAGCCGCGTGCATCCA
AGCCTTACCCCAATTCAAGACCCAAGAGTCGGCCATGACCATCAATGCCT
TCACCAAAATGGCGGACTTTGTTCCGTCCCCTGCTTTCTTCGCCGAAGTA
GAGCGTTGTGTCATTCAAAAAGCTGGCCAGCACCGCGCACAAGAAGTGGC
TAATACCATCCACGGGCTGGGCCGCCTAGGCTATGACCCGTCTCCACGTT
TTGTGGAGGCCTTTGCTGAGCACGGAATGGTCTTAATGGACAAAATGAAG
ACGCAAGAACTCGGCAATTTGATCAACGGCTTGAGCAAGATGACGTACCG
GccggcccctgccttcttcttgcgGTTCATGGACGTGTCCCAGCCAAAAT
TGCGCTACTTCACCACACAGGAATTGTCGAACGTCGTGAATGGTCTGATG
CGCCTGGGGTGCAAGCCGGATGAAGAGTACCTGCGGGCGACGGTGCAGAT
GGCGGCCAGGCACTTGTCGGAGTACAAGGAGCAAGAGCTCGCTTGCTTGT
TCCACGCCTACGGCCGcatgctcttctttcccgggACGGGCTTTATGGAG
GCATATGAGATGGAGTTTGGACGGCGAGTGGCCTCTGGAGTGAATAGTCA
AGCCCTGGCCATGACGTTGAACGCCTTCAACCGCCTGAATTGGAAACCTT
CTCCACGGCTCCTGCTTGAGATGGAAAAGTCGCTTGAATGTGCCACCTGC
GAAGGACTCATTTTCGGGGCCGAGCTCGCGCAAGCCGTCAATGGCTTGGC
TAATCTAAACCACACTCCGGGGCGCTCATTCCTGGCGGCATTCAAGAACG
TCATCCTCGAACAAAAGAATTACGTGGACCTGTCGACGATCGCCGTCATA
CTCTGGTCGCTCTCCGCCCTCGACCCGGCCCGCATGAAAGGGTTCTACac
ggagatggtggaggtAGCCTGTCGCCGGCTTGAAGGCGAGCAGCCTGATA
TCTTGCCAACCTCTTTCTCAGGCGAGCGCTCGTCCATGTACTACACCTCG
TTCAACGAGGTGGTTCCGACGATCGGGGGCGAGTCCTTGGAGCCGCCCAT
GGTCATGTGTGTCCGACAACTTCTGCAGACATGCCGCTACTTGACAATGC
TGGCCAACCCCATCgatcccgcccttttccaacgtttctcttctcttctc
gAGAAGAAGTGGGCCGAGATCCAGCGAGAGAAGTACGAAGTGCACACATC
TTATTTCCACCGGGACGTCTTGGCTGTTGTTACGAAAAGCTTGGGCTTGC
GCTGCGACATCGAAGTGGAGGATGAAGCTTACACACTGGACATGGTCATC
TACCCGACGGACGGAGGATTGCCTGTGGTTGTGGAGGCTGACGGTCCGCA
CCACTTTTTTCGCAATCAGCCGGACGAGGCCATGGGCTTCACCGTGTTCA
AGCACAGGCTCTTACAAGGCCGCTCGGACAGATGGAGGGCTGTTGTGTCG
GTGTCCCAAGCGGAGTGGCAAAgggcgaaggaaagcgaTTCTCAACGGGG
ACGGACGGCCCTGCTGATTGAGAAGCTGAGGGGAGCTGGCTtggacttgg
aggaggtgacagAGGCGGTAGTAGACCCGCCCATTTGA

Synonyms

Publications