rna292, rna292 (mRNA) Nannochloropsis gaditana

Overview
Namerna292
Unique Namerna292
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3730
Alignment locationCM002455.1:727253..728078 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100026g24.10649.mrna
Orig protein idgnl|cribi|Naga_100026g24.10649
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:727253..728078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100026g24gene281Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30395.1cds292Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna292rna292-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna292 ID=rna292|Name=rna292|organism=Nannochloropsis gaditana|type=mRNA|length=3730bp
GGGAGGCCGACTCTGGTGGATGATCGCTGTGTGATACCGCCCTTTTCTGT
CTGCTGCGAACAAGGGGTCACTTGACGTGCATGCACCCATCTGAACAGGA
AGTAAAAGGATAAAACTTTAATTAGTGGCATCCCAGAGGAGAACGGGATG
GCGACTGATACTCAGCCTGCGGGTGCGACCTCTGGACCTGAAGGGATGAA
CGGGTCTAGTGATGGTGGCGGAGGGGGGGTTGTTTGCACCGTGGATAAAG
CCTTGTTTCTGGAGCGCATGCGTCGCATCTACAAGAGCTGGAAACGGCAG
AAGACTAGTACTTGGGGAAATGCTTCCGCTTTGGCCTTCGTCTTCGGTGG
CTCTACCGACGTCACGTACAGCAAGTCGCTGGCTCTCATGTACCACCTGT
TTGGCGCCGAGCTGCAGCACGTCTTGCTCGTCCTCCTCCCAGACAAGGTG
CTCATCGTGGCTGGCGCTGGTACGCACCAGGCGCTGCGGGCATATGGCGC
GGAGGGGAGCAACGGCGGGGGTGGTGTCAAATCGGAAGAGGATGGGGGAG
ACTTGCAGGTGGTCGTGTCACGGTGGGACGAGGGGGAAGGTCAGACACTG
ACAGAGACAGTCGAGGAAATCAGAGCTAGCGGTAAAGCAGGCAGCGGCAA
CGAGTCGGTCGAGGGCCCGTCAAAGGTGGGCGGGTTGACCAAGGACAAGG
CGGAAGGGCCGCTGGCGGAGAGGTGGAAGAAGCTCTTTCCTGGGCCCGCG
GACGCCCCTGTCGCCGAAATCGTTGACGTGGCGGCGCCGATGGGGCTTCT
CCTCGCCTTGAAGGACGAGGTGGCGGCCAAGAACATGGAGGTGGCGGCCC
GGATCACCTCCAAGGTCTTCAAGAAGTGCCTGGTCCAGCGCATCGAGGAC
GTGATCGACGAGGACGCCAGCATCCGGCACGACGCGCTGGCCGAGGAGGT
GGAAAGCGTGGTCAGGGACCCAAGCAAGATCGACCTGAAGGTCCCCAAGG
AGGACATGGAGAGCTGCTACTTCCCCATCGTGCAGAGCGGGGGCGAGTAC
GACATCAAGGCCAGCGCGGAGACGACAAGCAAGCCCCTCCAGCAGGACAT
TATCCTTTGCTCTATGGGGGTCTCCTACCGCGGCTATTGCGCCAATGTCG
CGCGCACCATTCTGATCGACCCGCCCAAGAAGGTGCAGGAGGCTTACAAG
GCCCTGGCCTCGACCTTCGAGGCCTGCCTGGACGCCATGCGCCCCGGTGA
GCCCCTCAAGGCGGTCCAGGAGGCTTGTCGCGCCCATCTGGAGAAGAGGC
ATCCCGAATATCTTCCCTTTCTGCCCAAGACTCTCGGCTCCTGCATCGGC
GCCGAGTTTCGAGACCCCACGCTCCTGCTGAACGCCAAGGCCGTCGCCAC
CTTCAAGCCACGCATGTACTTCAACCTCGTGGTGGGCTTTCAGAACGTTC
CCTTGACGCCCCAGGACCGAAAGCGGGCCAAGGCAGGGGCTGCCGCAGCC
AAACTAGAGCATTTCAGCTTGTTGTTGGCGGACACGGTGCGGATCCCGGA
GTCGGGCTCGGCCTCCCTGGACGAGAAGTTGGTGACCAGGTATGACTACC
AGCTGGCGAAGGTGATGTGGGAGATCGGGGAGGAGGGCGAGGGGGAGGAC
GATCAGGACGGTGAGGACGAGGGCGAGCATAGGAGTCGGCAGGACGCAGC
CTCGGCTAGAGCCATCGCCAACATCTTGCCCAGCCGGCTGCGGGAACGGA
AGAGGGAGGGGGAGGACGGTCTTTCTCAAGGGGAGATCGACAAGCAGATG
AAGGCCCTGCTGTTGCGCAAGATGAAAGAGCGCGCGGAGAAGGCGGGCAA
GTCTGGAAGGAAAGAGGCGGTGGAGGAGGAGGGCGAGGTGGAGGAGATAC
AGGCGTATCGGTCGACGGAGCAGTATCCCCGCGACATGCGCGCCAATCAG
GTATTTGTAGACATGGAGCGCGAGGCTGTCCTGCTGCCCATCCACGGCAT
GCACGTGCCATTCCACATCGCCACGATCAAGAACGTGGTGCAGCCTGAGC
CGGATGCCGCCGCCTACCTGCGCATCAATTTCTACTCGCCGGGACAGACC
CTGGGGAAGGACGCCCCGGGGATCATGTCCAAGCTCGTGCAGGCTCATGG
CCAGAAGGCTGGCTTCGTCAAAGAGATGCTCTTCCGCTCCCTGGAGCACC
GGAATCTCAACAACGCCTACCGCCTCATCCAGGAGCTGCGAAAGCGAGCC
CGGCAGCGCGAGAAGGACGCGAAGGAGGAGGCGGATCTAGTGGAGCAGGA
GAAGATCGTCTTGCTGAAGAACCAACGGGTGCACAAGCTGCAGGACGTGG
TCATGCGCCCGCACATCTCGGGCCGGAAGACCATGGGGACCCTGGAGGCC
CACGCGAACGGCCTGCGTTTCCGCTCTAAGAAGCAGGAGGTGGTGGACAT
TATGTACGCCAACGTCCGAAACGCGATTTTCCAGCCGTGCTACTCGGATC
TGAACGTGCTGATCCACTTCCACCTGAAGGACCCGATCATGATCAACAAA
AAGAAGGCGCAGGACGTGCAGTTCTACACCGAGGTGGTAGAGTCCGTCAT
CAACATGGAGGGGGCGCGTCGATCCACCTACGACCCCGACGAGATCGAGG
AAGAGCAGCGCGAACGGGTGCTCAAGAAGCGCCTAAACGACCTGTTCAAG
GACTTTGCGCAGCGCGTGCAGCAGGTGGCTCAGGCCCACGACCACCTCCT
CGAGTTCGACGCCCCCTACCGGGACCTGGCCTTCTCGGGCACCCCCCACC
GGGAGATGGTCACGGTCCACTTCTCCGCGCAGTGCATCATGAGTGTCTCG
GAGGCCCCTTTCTTCGTGGTGCCCCTGGACGACATCGAGCACGTGCACTT
CGAGCGGGTCATGCCCTCGGGCAAGAACCTGGACATGGTCATCATCCTCA
AGGACTTCGACAAGGAGCCCCTGACAATCAACTCCATCCCGCGCGAGCAT
TTCGTCAAGATCGAGCAGACCCTGCTGGACGTGGAAGTGACCTTCACGTA
CGGGATGCAGTCCTGGAAGTGGAAGGAGGTGCTGGCAGGCGCCAAGGAGG
ACGAAGACTTCTATTCCTCGGTGGATTCGGACGGGTCGGAGAAGGACCCG
GGGTGGGCGATTTTCCTGCCCAAGGAGGCGGGGGAGGGGTCGGATTCTGA
GGAGGATGAAGACGAGGACTCGGAGTTTGAGGCCAACTCCGAGTCGGAGG
AGGACGAGGAGGACGAAGAGGACGAGAGCGACTTTGAAGAGGAGGAGGAG
GAGGAGGAGAGCGAGAGTGATTTTGACGAAGAGGAGGAGGATGACTACAG
CGACGCGGATTGGGAGAAGCAGGAGAAGCGGCTCATGGCGGAGGATCGCA
TGAAAGACCGGGGCATGGAGGAGGAGGAGACGCGGAAGCGTCCCAAGGGA
GGGGGCGGCAGCCGGCGGGGTCCGCCTCCAAAGCGCTCACGACGGTGAGG
CTGTCCATGCAGAGGAGGCTGGCTGAAAAGTACGGGGGTAGGATTGAGGT
AGCACGGGAGGTATGACAGAAAGGTGGAGGAGAGACGGGGCTTTGGCGGC
GGGGGGGGGGGGGGAATCAAGCGACGCAGCGATCCTAGCAGCCACCAGAG
CGTCAGTCGCATCCCGGCGGGCGACCGGACCCTTCTGTAAGGATTGAAAG
AAGTCTCATAAACGGAACGTCTCGACAAAT
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protein sequence of rna292

>rna292-protein ID=rna292-protein|Name=rna292|organism=Nannochloropsis gaditana|type=polypeptide|length=136bp
MRCVQLFLCISILMVAVCEAWRVRSADFSKVRGGAVLKTRTTGKSMTAHR
RNRVYKKDNAFVRFFGGMKVFFKSYFASLINPTFEKELMTGNRGSGAGVA
GPASDLKAGKVRRKRVGGRRVGSISDLAPEPSSCGA
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mRNA from alignment at CM002455.1:727253..728078-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna292 ID=rna292|Name=rna292|organism=Nannochloropsis gaditana|type=mRNA|length=826bp|location=Sequence derived from alignment at CM002455.1:727253..728078- (Nannochloropsis gaditana)
TGGCTTGAAAAGATGAGGAACAACAAGATCTTTCGTGTGACTCCCTGAAT
CGTCTCGCCTCGCCGTCTGCTCGCCCCTCTTGGGGTGATACAAGATTGAC
CCTAAATGCACGAATACCTGTGCTAGGAGCATGCTGCCGAACAAGAATGT
CAATTCTACCGTAAACGGCCAATGCTTTCAACTTCGCAGCCCTTCGAATT
CGGCGTACGTAAGATAAGGTCACGCTTTCTGACTGCTAATAAAAAGATAG
CGGAGTCTCATCATCCGCCGGTTTTCTATTCATCTACTGCGAACACAGGG
CGTACATTAGTACCATGCGTTGTGTACAGCTCTTTCTATGCATTTCTATC
CTCATGGTAGCAGTATGTGAGGCTTGGAGGGTCAGGTCAGCTGATTTTTC
CAAAGTGCGGGGGGGAGCAGTGCTGAAGACGCGTACGACAGGCAAGAGCA
TGACCGCACATCGACGCAACCGTGTCTACAAGAAGGACAATGCTTTCGTT
CGCTTTTTCGGAGGCATGAAAGTGTTTTTTAAGTCCTATTTTGCCTCCTT
AATCAACCCAACATTCGAAAAAGAGCTTATGACTGGTAATCGCGGCAGCG
GGGCCGGCGTTGCCGGGCCTGCATCCGACTTAAAAGCGGGCAAAGTTCGT
AGAAAACGCGTGGGCGGTCGACGAGTGGGCTCCATAAGCGACTTGGCACC
TGAGCCATCATCGTGCGGGGCGTAGATACATATTGTACAATAGTTGATAA
ATCTCGACAGAGACTCGCCGGAAAATCACTCTTGTCCAAAGAAACAATAT
TTTTGTGGAAAAGGAATGATTATGGA
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Coding sequence (CDS) from alignment at CM002455.1:727253..728078-

>rna292 ID=rna292|Name=rna292|organism=Nannochloropsis gaditana|type=CDS|length=411bp|location=Sequence derived from alignment at CM002455.1:727253..728078- (Nannochloropsis gaditana)
ATGCGTTGTGTACAGCTCTTTCTATGCATTTCTATCCTCATGGTAGCAGT
ATGTGAGGCTTGGAGGGTCAGGTCAGCTGATTTTTCCAAAGTGCGGGGGG
GAGCAGTGCTGAAGACGCGTACGACAGGCAAGAGCATGACCGCACATCGA
CGCAACCGTGTCTACAAGAAGGACAATGCTTTCGTTCGCTTTTTCGGAGG
CATGAAAGTGTTTTTTAAGTCCTATTTTGCCTCCTTAATCAACCCAACAT
TCGAAAAAGAGCTTATGACTGGTAATCGCGGCAGCGGGGCCGGCGTTGCC
GGGCCTGCATCCGACTTAAAAGCGGGCAAAGTTCGTAGAAAACGCGTGGG
CGGTCGACGAGTGGGCTCCATAAGCGACTTGGCACCTGAGCCATCATCGT
GCGGGGCGTAG
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Synonyms
Publications