rna287, rna287 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna287
Unique Name	rna287
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1462
Alignment location	CM002455.1:716054..718318 +

Link to JBrowse

Properties


Property Name	Value
Product	adenosine 3 -phospho 5 -phosphosulfate transporter 2
Orig transcript id	gnl\|cribi\|Naga_100026g29.10660.mrna
Orig protein id	gnl\|cribi\|Naga_100026g29.10660
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:716054..718318 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100026g29	gene276	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna287	rna287-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30406.1	cds287	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:716054..718318+
coding sequence from alignment at CM002455.1:716054..718318+

mRNA sequence

>rna287 ID=rna287|Name=rna287|organism=Nannochloropsis gaditana|type=mRNA|length=1462bp
CTCACACTCGCAAACCGTGGACGGGGTGGCTGACCGGGGGCGGGAGGTCG
GCTTGCTCTTTCTCGCCATGCCGTCACGCGCATGACCTTGGCCTTCCGTA
AGGCTTTAAGTCCCAGCAGCCGGCCAACCAGTGGTGCCCACGCCGAGCGG
TGGCGAGTAGACCAATTATTGCGGTGTGCAGGCTACGGTGACTTTGTTCG
AAACAGTGCTCACATCACAGCACCCACTCCAGAGACAGGGTAGAAGGAGC
GGCGACGGCACGCTAGTAGCATAATGCAGCCGCCTCTGTCACCCACTTCC
ACCGCGAGTCCGGTCCAAGACTTCGCATATTGGAAGCAGAAGGCAGTCCA
GCTCGAGAATGAGTTGGTTGCATTGAAGGAGCGCTCCATCAAAATGTTTT
GCCGGACGGAGGCTGAGGAGGAAGGTATCATCAACAAGCTGATAAACCGC
TTGGAAGAGCTCAAGAAAGAGAAGGAGCACCTGGCTGTAGAGGTCGAGCG
AGAAGAAGAGATGATATCCAACACGCTTCAAAAGAAGCTCACTAAATTGC
AGCAAGAAAAAGTAGACCAGGAGAACCAGCTGGAGGCAGAGCAGGAGGCC
ATCGTCAACAAACTCGGTGCGGAGATTTCGAAGCTGCGCAAAGAAAAGGA
GACCCTAATGACCGAAATAGAGCGGGAAGAAGAACATCTGACCAACAATC
TCTCTCGCAAACTGACGAGAGAGCGCGCGGAGAAAGAGGCATTGGAAGCC
CGGCTGCTGTCGGAACGGAAGCAAGTGCTGGAGTCGAGGGCATTGTTGAA
GGAGGATGCCTGTCTGATAACACAGCTGAAGGCCGCCGTGGAGCCGCTAA
AAGACGAGGGCGCCCTAAAGCTTAAGGACAGGGAATCCATTTTACAAGTG
TCAGAGCGCCTCATAAATCGCCTCTCGGTAATAGAGAGCGCAACGAGCGA
CAAAGAGGAAGACGAGGAAAGCAAGGAAGGGACAGACAGTATCAGCAGCA
TCGGAGCCACTGCAGGCGGTGGTAGCAGTCGTGGCAGCAGCATTGCGGGC
GGAAGCGATGTATAAAGGGAAGGAGACAAAAGCGTTTGAAACAAGCCATA
GGGAATTTCACCTTTGTATTTTGATATTGTGACATTGATACTTATTGTGA
CATTGATACTTATAAATCGAAAGATCTGTCCACGGTAGCTTTGAAGGCGA
TGTGTGCATGTATACTTCCGCACATCATCCATTGAGTTGTTGCTTGTCAG
AGGTGAAAACTTGCTCTCAGAGTGTCCCATTTTGCTTTGAAACTTTCTCC
CCAGCAAAACCTCTTCAACTTGTCATAGAATGGTGAACAATTTAGAATGA
ATGAATCACTGTTCTGTTCAAGCTCGCAATTGATGGCCAGGCGGTGACAA
AAGAGCGTTTTGCACACACTCACGTTGAAGACATTGAGAAGGGGGTCATC
AGGGACAAAACA

protein sequence of rna287

>rna287-protein ID=rna287-protein|Name=rna287|organism=Nannochloropsis gaditana|type=polypeptide|length=504bp
MRARLLQAAGVGWPPLSRNQESEPAELVNLSIMDEDTGHSYEHLRRSESS
ASGMPPKQRLGQSIVGGETISGRIRKHLGLGAPDVDSQNGQTSESGSTFR
PPVDAASIPAATAAGKTWRSHASQAHHGHDRPSFRVIGVQISHLTRTGQF
LFCTLGVFSFLLVYGFLQEYMVIHVFERRLGIFLTLCQFSGYSSLAALHR
LIHADTPRRIPFGYYILLASLQALMQGLTNLSMRWLNYPAKMLFKSSRVI
PTMLVGILIMKKRYKVKDYVVVALLSLGLVFFVQADVKVSPSFHPLGIIF
ICMALAVDAAIVNIQEFTLRKYDASHDELIFYSYGLGSIILFIYCLLSWE
LFEGIVFLQSHGLRATCCLLVFCSCGYFGVTCVAALTKKFGALASTMTTT
ARKALTLFLSFFIFPKPATGMHVVGGLLFVSGLSVKAIPTGRNKDDPSIA
TSYLPSSSCVALKAQQTRSLLSSSAVKTIGPTTTSVTAIRRATEEGGGIN
MELV

mRNA from alignment at CM002455.1:716054..718318+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna287 ID=rna287|Name=rna287|organism=Nannochloropsis gaditana|type=mRNA|length=2265bp|location=Sequence derived from alignment at CM002455.1:716054..718318+ (Nannochloropsis gaditana)
TGCAATGCGTAGGAACTCGTCTGTCAGCTTCCGTGAAGCATGATCATCAA
TTAATCTTCAGGTATGCTTGTCTTTTATCTCGCAGGCCAGGGGCGCGGGG
AGATCTATGGCCATCTAGCGGTgtatttttccctttccataTTTCATTTc
tcgtggaagggaagggccggAACAACAAGCTTCTTAGCTAAGCGACGAAA
ACCGGAATACCCGGCACTGCTGACCACTAGCTGTTCTTAGATCCTGGCAC
TGAAGCATGCGGGCACGTCTCTTGCAAGTAAGAAGGGTGCGAAAGCGAGT
TCGGGGGGGCGTGGCAAAATCCCTCTAATCTAGAGTTACCTACCACCTCT
TTCTAAAAACTCAGGCCGCGGGTGTGGGATGGCCTCCTTTGTCGAGAAAT
CAGGAATCCGAGCCAGCAGAGCTTGTAAATCTTTCCATTATGGACGAGGA
TACAGGTCACAGCTACGAGCATTTGCGGAGGAGTGAGTCCAGCGCTTCAG
GAATGCCTCCCAAACAGCGTTTGGGCCAAAGCatcgtgggaggggaaacc
aTCTCAGGGAGGATCCGGAAGCATCTTGGGCTTGGAGCGCCGGACGTGGA
TAGTCAAAACGGGCAAACTTCTGAGTCAGGAAGcactttccgccctcctg
tcgatgccgcctccatcccagCAGCCACGGCGGCTGGGAAAACGTGGAGG
AGTCACGCCAGTCAGGCTCATCACGGCCACGACCGACCGTCCTTCCGTGT
CATCGGCGTACAAATTTCGCACCTCACTCGTACGGGACAGTTCCTATTCT
GTACCCTTGGGGtgttttccttcttgctAGTGTACGGCTTTTTGCAAGAG
TATATGGTCATTCATGTATTCGAGCGTCGCCTAGGAATCTTTTTGACCCT
CTGCCAGTTCTCGGGCTATTCCTCTCTCGCAGCCCTGCATCGACTTATCC
ACGCGGACACGCCTCGGAGGATCCCCTTTGGCTACTACATCCTCTTGGCC
TCCCTGCAGGCGCTCATGCAAGGTCTGACAAACCTGTCTATGCGTTGGCT
GAACTACCCGGCCAAGATGTTGTTTAAGTCCTCACGCGTCATTCCCACCA
TGCTCGTGGGCATTTTGATCATGAAAAAGCGATACAAGGTACGTTGCGAC
ACTTGCTTGCAGGTGTGAGATACCTTCGCATTCGAGGAGAGCCACTAGTC
GCTCCCAAAGCATGTGCTCCTTGACGCTCCAGCTTGTGGCCAGACCTGTG
GTCATTCCGTTTTTGTTGATTGAGTATCGCATGCCCATACGGCACACGAA
CAGGTAAAGGACTACGTGGTGGTAGCGCTCCTGTCCTtgggcctcgtctt
cttcgtgcAGGCCGACGTCAAggtctcgccctccttccaccctctgGGGA
TCATCTTCATCTGTATGGCCCTAGCCGTGGACGCCGCCATTGTCAACATC
CAGGAATTTACACTCCGCAAATATGATGCCTCACACGACGAGCTTATCTT
CTACTCCTACGGCTTGGGCTCtatcatcctcttcatctaCTGTCTCCTCT
CTTGGGAGCTTTTCGAGGGTATAGTCTTCCTTCAGTCGCACGGCTTGCGG
GCAACCTGCTGTTTGCTCGTCTTTTGCTCGTGTGGCTACTTTGGCGTCAC
GTGTGTGGCTGCACTGACCAAAAAATTTGGAGCTCTGGCCTCGACCAtga
ccaccaccgcccgcaAGGCGCTGACgctcttcctgtccttcttcattttc
cccaAGCCCGCCACCGGCATGCACGTCGTCGGGGGGCTTCTCTTTGTCTC
CGGACTCTCCGTGAAAGCCATTCCCACCGGCAGAAATAAGGATGACCCCT
CCATCGCGACTTCGTAtttgccctcctcgtcatgcGTCGCACTTAAAGCT
CAACAAACGCGTTCATTGCTGTCCTCGTCGGCTGTCAAAACTATTGGCCC
CACCACTACTTCTGTTACAGCGATCAGAAGAGCgacggaagaaggaggcg
gaatCAACATGGAGTTGGTGTAGATACGAGTTTCCAAAGTACGTATCAAG
CGTGTATGATTTAATGCATGAAATAGAGGCTCCAGGTGGGATAGTGGGAT
GCGGGCGAAAAGTCGTGTAGGCCTGTTTCTGGTGGAACGCTGCGAATCTT
CTCCTTATCAATTACGGGGGATTTAAAAAGCAACAAACTGATAGGACCTG
TGGACATCTTGTCgaacaagaggaagagaaacatGTTCCTTTTTTGCCGT
CAAAGTCCGAGGATT

Coding sequence (CDS) from alignment at CM002455.1:716054..718318+

>rna287 ID=rna287|Name=rna287|organism=Nannochloropsis gaditana|type=CDS|length=4545bp|location=Sequence derived from alignment at CM002455.1:716054..718318+ (Nannochloropsis gaditana)
ATGCGGGCACGTCTCTTGCAAGCCGCGGGTGTGGGATGGCCTCCTTTGTC
GAGAAATCAGGAATCCGAGCCAGCAGAGCTTGTAAATCTTTCCATTATGG
ACGAGGATACAGGTCACAGCTACGAGCATTTGCGGAGGAGTGAGTCCAGC
GCTTCAGGAATGCCTCCCAAACAGCGTTTGGGCCAAAGCatcgtgggagg
ggaaaccaTCTCAGGGAGGATCCGGAAGCATCTTGGGCTTGGAGCGCCGG
ACGTGGATAGTCAAAACGGGCAAACTTCTGAGTCAGGAAGcactttccgc
cctcctgtcgatgccgcctccatcccagCAGCCACGGCGGCTGGGAAAAC
GTGGAGGAGTCACGCCAGTCAGGCTCATCACGGCCACGACCGACCGTCCT
TCCGTGTCATCGGCGTACAAATTTCGCACCTCACTCGTACGGGACAGTTC
CTATTCTGTACCCTTGGGGtgttttccttcttgctAGTGTACGGCTTTTT
GCAAGAGTATATGGTCATTCATGTATTCGAGCGTCGCCTAGGAATCTTTT
TGACCCTCTGCCAGTTCTCGGGCTATTCCTCTCTCGCAGCCCTGCATCGA
CTTATCCACGCGGACACGCCTCGGAGGATCCCCTTTGGCTACTACATCCT
CTTGGCCTCCCTGCAGGCGCTCATGCAAGGTCTGACAAACCTGTCTATGC
GTTGGCTGAACTACCCGGCCAAGATGTTGTTTAAGTCCTCACGCGTCATT
CCCACCATGCTCGTGGGCATTTTGATCATGAAAAAGCGATACAAGGTAAA
GGACTACGTGGTGGTAGCGCTCCTGTCCTtgggcctcgtcttcttcgtgc
AGGCCGACGTCAAggtctcgccctccttccaccctctgGGGATCATCTTC
ATCTGTATGGCCCTAGCCGTGGACGCCGCCATTGTCAACATCCAGGAATT
TACACTCCGCAAATATGATGCCTCACACGACGAGCTTATCTTCTACTCCT
ACGGCTTGGGCTCtatcatcctcttcatctaCTGTCTCCTCTCTTGGGAG
CTTTTCGAGGGTATAGTCTTCCTTCAGTCGCACGGCTTGCGGGCAACCTG
CTGTTTGCTCGTCTTTTGCTCGTGTGGCTACTTTGGCGTCACGTGTGTGG
CTGCACTGACCAAAAAATTTGGAGCTCTGGCCTCGACCAtgaccaccacc
gcccgcaAGGCGCTGACgctcttcctgtccttcttcattttccccaAGCC
CGCCACCGGCATGCACGTCGTCGGGGGGCTTCTCTTTGTCTCCGGACTCT
CCGTGAAAGCCATTCCCACCGGCAGAAATAAGGATGACCCCTCCATCGCG
ACTTCGTAtttgccctcctcgtcatgcGTCGCACTTAAAGCTCAACAAAC
GCGTTCATTGCTGTCCTCGTCGGCTGTCAAAACTATTGGCCCCACCACTA
CTTCTGTTACAGCGATCAGAAGAGCgacggaagaaggaggcggaatCAAC
ATGGAGTTGGTGTAGATGCGGGCACGTCTCTTGCAAGCCGCGGGTGTGGG
ATGGCCTCCTTTGTCGAGAAATCAGGAATCCGAGCCAGCAGAGCTTGTAA
ATCTTTCCATTATGGACGAGGATACAGGTCACAGCTACGAGCATTTGCGG
AGGAGTGAGTCCAGCGCTTCAGGAATGCCTCCCAAACAGCGTTTGGGCCA
AAGCatcgtgggaggggaaaccaTCTCAGGGAGGATCCGGAAGCATCTTG
GGCTTGGAGCGCCGGACGTGGATAGTCAAAACGGGCAAACTTCTGAGTCA
GGAAGcactttccgccctcctgtcgatgccgcctccatcccagCAGCCAC
GGCGGCTGGGAAAACGTGGAGGAGTCACGCCAGTCAGGCTCATCACGGCC
ACGACCGACCGTCCTTCCGTGTCATCGGCGTACAAATTTCGCACCTCACT
CGTACGGGACAGTTCCTATTCTGTACCCTTGGGGtgttttccttcttgct
AGTGTACGGCTTTTTGCAAGAGTATATGGTCATTCATGTATTCGAGCGTC
GCCTAGGAATCTTTTTGACCCTCTGCCAGTTCTCGGGCTATTCCTCTCTC
GCAGCCCTGCATCGACTTATCCACGCGGACACGCCTCGGAGGATCCCCTT
TGGCTACTACATCCTCTTGGCCTCCCTGCAGGCGCTCATGCAAGGTCTGA
CAAACCTGTCTATGCGTTGGCTGAACTACCCGGCCAAGATGTTGTTTAAG
TCCTCACGCGTCATTCCCACCATGCTCGTGGGCATTTTGATCATGAAAAA
GCGATACAAGGTAAAGGACTACGTGGTGGTAGCGCTCCTGTCCTtgggcc
tcgtcttcttcgtgcAGGCCGACGTCAAggtctcgccctccttccaccct
ctgGGGATCATCTTCATCTGTATGGCCCTAGCCGTGGACGCCGCCATTGT
CAACATCCAGGAATTTACACTCCGCAAATATGATGCCTCACACGACGAGC
TTATCTTCTACTCCTACGGCTTGGGCTCtatcatcctcttcatctaCTGT
CTCCTCTCTTGGGAGCTTTTCGAGGGTATAGTCTTCCTTCAGTCGCACGG
CTTGCGGGCAACCTGCTGTTTGCTCGTCTTTTGCTCGTGTGGCTACTTTG
GCGTCACGTGTGTGGCTGCACTGACCAAAAAATTTGGAGCTCTGGCCTCG
ACCAtgaccaccaccgcccgcaAGGCGCTGACgctcttcctgtccttctt
cattttccccaAGCCCGCCACCGGCATGCACGTCGTCGGGGGGCTTCTCT
TTGTCTCCGGACTCTCCGTGAAAGCCATTCCCACCGGCAGAAATAAGGAT
GACCCCTCCATCGCGACTTCGTAtttgccctcctcgtcatgcGTCGCACT
TAAAGCTCAACAAACGCGTTCATTGCTGTCCTCGTCGGCTGTCAAAACTA
TTGGCCCCACCACTACTTCTGTTACAGCGATCAGAAGAGCgacggaagaa
ggaggcggaatCAACATGGAGTTGGTGTAGATGCGGGCACGTCTCTTGCA
AGCCGCGGGTGTGGGATGGCCTCCTTTGTCGAGAAATCAGGAATCCGAGC
CAGCAGAGCTTGTAAATCTTTCCATTATGGACGAGGATACAGGTCACAGC
TACGAGCATTTGCGGAGGAGTGAGTCCAGCGCTTCAGGAATGCCTCCCAA
ACAGCGTTTGGGCCAAAGCatcgtgggaggggaaaccaTCTCAGGGAGGA
TCCGGAAGCATCTTGGGCTTGGAGCGCCGGACGTGGATAGTCAAAACGGG
CAAACTTCTGAGTCAGGAAGcactttccgccctcctgtcgatgccgcctc
catcccagCAGCCACGGCGGCTGGGAAAACGTGGAGGAGTCACGCCAGTC
AGGCTCATCACGGCCACGACCGACCGTCCTTCCGTGTCATCGGCGTACAA
ATTTCGCACCTCACTCGTACGGGACAGTTCCTATTCTGTACCCTTGGGGt
gttttccttcttgctAGTGTACGGCTTTTTGCAAGAGTATATGGTCATTC
ATGTATTCGAGCGTCGCCTAGGAATCTTTTTGACCCTCTGCCAGTTCTCG
GGCTATTCCTCTCTCGCAGCCCTGCATCGACTTATCCACGCGGACACGCC
TCGGAGGATCCCCTTTGGCTACTACATCCTCTTGGCCTCCCTGCAGGCGC
TCATGCAAGGTCTGACAAACCTGTCTATGCGTTGGCTGAACTACCCGGCC
AAGATGTTGTTTAAGTCCTCACGCGTCATTCCCACCATGCTCGTGGGCAT
TTTGATCATGAAAAAGCGATACAAGGTAAAGGACTACGTGGTGGTAGCGC
TCCTGTCCTtgggcctcgtcttcttcgtgcAGGCCGACGTCAAggtctcg
ccctccttccaccctctgGGGATCATCTTCATCTGTATGGCCCTAGCCGT
GGACGCCGCCATTGTCAACATCCAGGAATTTACACTCCGCAAATATGATG
CCTCACACGACGAGCTTATCTTCTACTCCTACGGCTTGGGCTCtatcatc
ctcttcatctaCTGTCTCCTCTCTTGGGAGCTTTTCGAGGGTATAGTCTT
CCTTCAGTCGCACGGCTTGCGGGCAACCTGCTGTTTGCTCGTCTTTTGCT
CGTGTGGCTACTTTGGCGTCACGTGTGTGGCTGCACTGACCAAAAAATTT
GGAGCTCTGGCCTCGACCAtgaccaccaccgcccgcaAGGCGCTGACgct
cttcctgtccttcttcattttccccaAGCCCGCCACCGGCATGCACGTCG
TCGGGGGGCTTCTCTTTGTCTCCGGACTCTCCGTGAAAGCCATTCCCACC
GGCAGAAATAAGGATGACCCCTCCATCGCGACTTCGTAtttgccctcctc
gtcatgcGTCGCACTTAAAGCTCAACAAACGCGTTCATTGCTGTCCTCGT
CGGCTGTCAAAACTATTGGCCCCACCACTACTTCTGTTACAGCGATCAGA
AGAGCgacggaagaaggaggcggaatCAACATGGAGTTGGTGTAG

Synonyms

Publications