EWM30388.1, cds271 (CDS) Nannochloropsis gaditana

Overview
NameEWM30388.1
Unique Namecds271
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:691125..691281 +
Alignment locationCM002455.1:691405..691469 +
Alignment locationCM002455.1:691559..691657 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30388.1
Productmitochondrial ribosomal protein l27
Orig transcript idgnl|cribi|Naga_100026g45.10642.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:691125..691281 +
CM002455.1supercontigCM002455.1:691405..691469 +
CM002455.1supercontigCM002455.1:691559..691657 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005739mitochondrion
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
Vocabulary: INTERPRO
TermDefinition
IPR019189Ribosomal_L27/L41_mit
Homology
BLAST of EWM30388.1 vs. NCBI_GenBank
Match: gi|585113048|gb|EWM30388.1| (mitochondrial ribosomal protein l27 [Nannochloropsis gaditana])

HSP 1 Score: 215.698 bits (548), Expect = 6.250e-71
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0
Query:    1 MPLLAGINTGFQRLSKYLSKAARKRLPLSPKRTGKGFYKGNKCASTGRINSIGRFRMDERKRVELNVPDLTGFKLKPYVSPTVFKYPVDAGIIWPPTKKTTNFFGV 106
            MPLLAGINTGFQRLSKYLSKAARKRLPLSPKRTGKGFYKGNKCASTGRINSIGRFRMDERKRVELNVPDLTGFKLKPYVSPTVFKYPVDAGIIWPPTKKTTNFFGV
Sbjct:    1 MPLLAGINTGFQRLSKYLSKAARKRLPLSPKRTGKGFYKGNKCASTGRINSIGRFRMDERKRVELNVPDLTGFKLKPYVSPTVFKYPVDAGIIWPPTKKTTNFFGV 106          
BLAST of EWM30388.1 vs. NCBI_GenBank
Match: gi|299117457|emb|CBN73960.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 94.7449 bits (234), Expect = 3.121e-23
Identity = 48/85 (56.47%), Postives = 59/85 (69.41%), Query Frame = 0
Query:    1 MPLLAGINTGFQRLSKYLSKAARKRLPLSPKRTGKGFYKGNKCASTGRINSIGRFRMDERKRVELNVPDLTGFKLKPYVSPTVFK 85
            MPL+  I TG  R+SKY+SK+ARKR+P++ K   K FYKG      G INS GRF +D  KR+E+  PDL GFKLKPYVS  V+K
Sbjct:    1 MPLIGNIVTGGLRMSKYISKSARKRIPMTSKMGNKNFYKGKGATKEGTINSRGRFIVDPEKRLEIIAPDLDGFKLKPYVSKAVWK 85          
BLAST of EWM30388.1 vs. NCBI_GenBank
Match: gi|1210524478|dbj|GAX16736.1| (hypothetical protein FisN_21Hh179 [Fistulifera solaris])

HSP 1 Score: 88.5817 bits (218), Expect = 1.321e-20
Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = 0
Query:   12 QRLSKYLSKAARKRLPLSPKRTGKGFYKGNKCASTGRINSIGRFRMDERKRVELNVPDLTGFKLKPYVSPTVFKYP 87
            + +SKYLSKAA+KRL L+ KR  KGFYKGN     GR+ S G+F +D  +R+EL +PDLTGFKLKPY++ +V K P
Sbjct:   27 RHMSKYLSKAAKKRLVLTTKRAHKGFYKGNGATKEGRLTSKGKFIVDPLRRLELVIPDLTGFKLKPYIARSVPKVP 102          
BLAST of EWM30388.1 vs. NCBI_GenBank
Match: gi|1210530941|dbj|GAX10481.1| (hypothetical protein FisN_21Lh179 [Fistulifera solaris])

HSP 1 Score: 87.8113 bits (216), Expect = 2.568e-20
Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = 0
Query:   12 QRLSKYLSKAARKRLPLSPKRTGKGFYKGNKCASTGRINSIGRFRMDERKRVELNVPDLTGFKLKPYVSPTVFKYP 87
            + +SKYLSKAA+KRL L+ KR  KGFYKGN     GR+ S G+F +D  +R+EL VPDLTGFKLKPY++ +V + P
Sbjct:   27 RHMSKYLSKAAKKRLVLTTKRAHKGFYKGNGATKEGRLTSKGKFIVDPLRRLELVVPDLTGFKLKPYIARSVPRVP 102          
BLAST of EWM30388.1 vs. NCBI_GenBank
Match: gi|224004902|ref|XP_002296102.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|209586134|gb|ACI64819.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 85.8853 bits (211), Expect = 4.700e-19
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 0
Query:   14 LSKYLSKAARKRLPLSPKRTGKGFYKGNKCASTGRINSIGRFRMDERKRVELNVPDLTGFKLKPYVSPTVFKYPVDAGI 92
            +SKYLSK+A KRLPL  KR  KG+YKG  C S GR+ S G+F  +  K+++L VPDL GFKLKPY++ ++ K P +  +
Sbjct:   80 MSKYLSKSATKRLPLDTKRAKKGYYKGKGCTSEGRLTSKGKFIANPLKKLQLIVPDLEGFKLKPYIAKSISKVPPEQRV 158          
BLAST of EWM30388.1 vs. NCBI_GenBank
Match: gi|397610716|gb|EJK60982.1| (hypothetical protein THAOC_18594, partial [Thalassiosira oceanica])

HSP 1 Score: 85.1149 bits (209), Expect = 3.397e-18
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 0
Query:    8 NTGFQRLSKYLSKAARKRLPLSPKRTGKGFYKGNKCASTGRINSIGRFRMDERKRVELNVPDLTGFKLKPYVSPTVFKYPVD 89
             T  + +SKYLSK+A KRLPL+ KR  KG+YKG  C S GR+ S G+F  D  K++ L VPDL GF LKPY++ TV K P +
Sbjct:  133 ETTRRHMSKYLSKSATKRLPLNTKRAKKGYYKGKGCTSEGRLTSKGKFIADPLKKLNLIVPDLEGFTLKPYIARTVDKRPPE 214          
BLAST of EWM30388.1 vs. NCBI_GenBank
Match: gi|1173960971|gb|OQS07049.1| (hypothetical protein THRCLA_20228 [Thraustotheca clavata])

HSP 1 Score: 71.633 bits (174), Expect = 3.097e-14
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 0
Query:   27 PLSPKRTGKGFYKGNKCASTGRINSIGRFRMDERKRVELNVPDLTGFKLKPYVSPTVFKYPV 88
            PL+ KR  + FYKG  C + G    +G +RMD  K +EL VPDLTGFKLKPYVSP V + PV
Sbjct:   22 PLTSKRANRRFYKGKGCRNEGVHGKLGGYRMDLTKMLELEVPDLTGFKLKPYVSPLVSRVPV 83          
BLAST of EWM30388.1 vs. NCBI_GenBank
Match: gi|675205813|ref|XP_008911791.1| (hypothetical protein PPTG_15794 [Phytophthora parasitica INRA-310] >gi|566014511|gb|ETI37422.1| hypothetical protein F443_16582 [Phytophthora parasitica P1569] >gi|567951956|gb|ETK77641.1| hypothetical protein L915_16113 [Phytophthora parasitica] >gi|567980631|gb|ETL31086.1| hypothetical protein L916_16009 [Phytophthora parasitica] >gi|568010149|gb|ETL84339.1| hypothetical protein L917_15805 [Phytophthora parasitica] >gi|568040048|gb|ETM37515.1| hypothetical protein L914_15935 [Phytophthora parasitica] >gi|568087970|gb|ETN02834.1| hypothetical protein PPTG_15794 [Phytophthora parasitica INRA-310] >gi|570318247|gb|ETO66195.1| hypothetical protein F444_16557 [Phytophthora parasitica P1976] >gi|570942013|gb|ETP07270.1| hypothetical protein F441_16409 [Phytophthora parasitica CJ01A1] >gi|570972523|gb|ETP35352.1| hypothetical protein F442_16423 [Phytophthora parasitica P10297] >gi|970657913|gb|KUF95739.1| Alpha-aminoadipic semialdehyde synthase [Phytophthora nicotianae])

HSP 1 Score: 71.2478 bits (173), Expect = 3.979e-14
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 0
Query:    1 MPLLAGINTGFQRLSKYLSKAARKRLPLSPKRTGKGFYKGNKCASTGRINSIGRFRMDERKRVELNVPDLTGFKLKPYVSP 81
            M LL G+ TGF R SK+    + +  PL+ KR  + FYKGN C + G+    GR+ +D+ K ++L VPDLT FKLK YVSP
Sbjct:    1 MGLLDGLITGFARKSKFGRSHSLR--PLTSKRANRRFYKGNGCRNEGKHAKRGRYVVDQDKLLQLEVPDLTDFKLKAYVSP 79          
BLAST of EWM30388.1 vs. NCBI_GenBank
Match: gi|953495370|emb|CEG43277.1| (mitochondrial ribosomal protein l27 [Plasmopara halstedii])

HSP 1 Score: 71.2478 bits (173), Expect = 4.156e-14
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 0
Query:    1 MPLLAGINTGFQRLSKYLSKAARKRLPLSPKRTGKGFYKGNKCASTGRINSIGRFRMDERKRVELNVPDLTGFKLKPYVSP 81
            M LL G+  GF R SK+    + +  PL+ KR  + FYKGN C + G     GR+ +D+ K+++L VPDLTGFKLK YVSP
Sbjct:    1 MGLLDGLVLGFTRKSKFGRSHSLR--PLTSKRANRRFYKGNGCRNEGTHAKRGRYVVDKNKQLQLEVPDLTGFKLKAYVSP 79          
BLAST of EWM30388.1 vs. NCBI_GenBank
Match: gi|813157965|ref|XP_012202331.1| (hypothetical protein SPRG_07663 [Saprolegnia parasitica CBS 223.65] >gi|641532943|gb|KDO26950.1| hypothetical protein SPRG_07663 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 70.4774 bits (171), Expect = 9.139e-14
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 0
Query:   27 PLSPKRTGKGFYKGNKCASTGRINSIGRFRMDERKRVELNVPDLTGFKLKPYVSPTVFKYPVDA 90
            PL+ KR  + FYKG  C + G    +G +RMD  K +EL VPDLTGFKLKPYVSP V + P  A
Sbjct:   23 PLTSKRANRRFYKGKGCRNEGVHAKLGGYRMDLTKMLELEVPDLTGFKLKPYVSPLVSRVPPSA 86          
The following BLAST results are available for this feature:
BLAST of EWM30388.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113048|gb|EWM30388.1|6.250e-71100.00mitochondrial ribosomal protein l27 [Nannochlorops... [more]
gi|299117457|emb|CBN73960.1|3.121e-2356.47conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210524478|dbj|GAX16736.1|1.321e-2057.89hypothetical protein FisN_21Hh179 [Fistulifera sol... [more]
gi|1210530941|dbj|GAX10481.1|2.568e-2057.89hypothetical protein FisN_21Lh179 [Fistulifera sol... [more]
gi|224004902|ref|XP_002296102.1|4.700e-1951.90predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397610716|gb|EJK60982.1|3.397e-1853.66hypothetical protein THAOC_18594, partial [Thalass... [more]
gi|1173960971|gb|OQS07049.1|3.097e-1456.45hypothetical protein THRCLA_20228 [Thraustotheca c... [more]
gi|675205813|ref|XP_008911791.1|3.979e-1448.15hypothetical protein PPTG_15794 [Phytophthora para... [more]
gi|953495370|emb|CEG43277.1|4.156e-1448.15mitochondrial ribosomal protein l27 [Plasmopara ha... [more]
gi|813157965|ref|XP_012202331.1|9.139e-1454.69hypothetical protein SPRG_07663 [Saprolegnia paras... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna271rna271Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications