EWM30388.1, cds271 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30388.1 vs. NCBI_GenBank
Match: gi|585113048|gb|EWM30388.1| (mitochondrial ribosomal protein l27 [Nannochloropsis gaditana]) HSP 1 Score: 215.698 bits (548), Expect = 6.250e-71 Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 Query: 1 MPLLAGINTGFQRLSKYLSKAARKRLPLSPKRTGKGFYKGNKCASTGRINSIGRFRMDERKRVELNVPDLTGFKLKPYVSPTVFKYPVDAGIIWPPTKKTTNFFGV 106 MPLLAGINTGFQRLSKYLSKAARKRLPLSPKRTGKGFYKGNKCASTGRINSIGRFRMDERKRVELNVPDLTGFKLKPYVSPTVFKYPVDAGIIWPPTKKTTNFFGV Sbjct: 1 MPLLAGINTGFQRLSKYLSKAARKRLPLSPKRTGKGFYKGNKCASTGRINSIGRFRMDERKRVELNVPDLTGFKLKPYVSPTVFKYPVDAGIIWPPTKKTTNFFGV 106
BLAST of EWM30388.1 vs. NCBI_GenBank
Match: gi|299117457|emb|CBN73960.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 94.7449 bits (234), Expect = 3.121e-23 Identity = 48/85 (56.47%), Postives = 59/85 (69.41%), Query Frame = 0 Query: 1 MPLLAGINTGFQRLSKYLSKAARKRLPLSPKRTGKGFYKGNKCASTGRINSIGRFRMDERKRVELNVPDLTGFKLKPYVSPTVFK 85 MPL+ I TG R+SKY+SK+ARKR+P++ K K FYKG G INS GRF +D KR+E+ PDL GFKLKPYVS V+K Sbjct: 1 MPLIGNIVTGGLRMSKYISKSARKRIPMTSKMGNKNFYKGKGATKEGTINSRGRFIVDPEKRLEIIAPDLDGFKLKPYVSKAVWK 85
BLAST of EWM30388.1 vs. NCBI_GenBank
Match: gi|1210524478|dbj|GAX16736.1| (hypothetical protein FisN_21Hh179 [Fistulifera solaris]) HSP 1 Score: 88.5817 bits (218), Expect = 1.321e-20 Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = 0 Query: 12 QRLSKYLSKAARKRLPLSPKRTGKGFYKGNKCASTGRINSIGRFRMDERKRVELNVPDLTGFKLKPYVSPTVFKYP 87 + +SKYLSKAA+KRL L+ KR KGFYKGN GR+ S G+F +D +R+EL +PDLTGFKLKPY++ +V K P Sbjct: 27 RHMSKYLSKAAKKRLVLTTKRAHKGFYKGNGATKEGRLTSKGKFIVDPLRRLELVIPDLTGFKLKPYIARSVPKVP 102
BLAST of EWM30388.1 vs. NCBI_GenBank
Match: gi|1210530941|dbj|GAX10481.1| (hypothetical protein FisN_21Lh179 [Fistulifera solaris]) HSP 1 Score: 87.8113 bits (216), Expect = 2.568e-20 Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = 0 Query: 12 QRLSKYLSKAARKRLPLSPKRTGKGFYKGNKCASTGRINSIGRFRMDERKRVELNVPDLTGFKLKPYVSPTVFKYP 87 + +SKYLSKAA+KRL L+ KR KGFYKGN GR+ S G+F +D +R+EL VPDLTGFKLKPY++ +V + P Sbjct: 27 RHMSKYLSKAAKKRLVLTTKRAHKGFYKGNGATKEGRLTSKGKFIVDPLRRLELVVPDLTGFKLKPYIARSVPRVP 102
BLAST of EWM30388.1 vs. NCBI_GenBank
Match: gi|224004902|ref|XP_002296102.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|209586134|gb|ACI64819.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 85.8853 bits (211), Expect = 4.700e-19 Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 0 Query: 14 LSKYLSKAARKRLPLSPKRTGKGFYKGNKCASTGRINSIGRFRMDERKRVELNVPDLTGFKLKPYVSPTVFKYPVDAGI 92 +SKYLSK+A KRLPL KR KG+YKG C S GR+ S G+F + K+++L VPDL GFKLKPY++ ++ K P + + Sbjct: 80 MSKYLSKSATKRLPLDTKRAKKGYYKGKGCTSEGRLTSKGKFIANPLKKLQLIVPDLEGFKLKPYIAKSISKVPPEQRV 158
BLAST of EWM30388.1 vs. NCBI_GenBank
Match: gi|397610716|gb|EJK60982.1| (hypothetical protein THAOC_18594, partial [Thalassiosira oceanica]) HSP 1 Score: 85.1149 bits (209), Expect = 3.397e-18 Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 0 Query: 8 NTGFQRLSKYLSKAARKRLPLSPKRTGKGFYKGNKCASTGRINSIGRFRMDERKRVELNVPDLTGFKLKPYVSPTVFKYPVD 89 T + +SKYLSK+A KRLPL+ KR KG+YKG C S GR+ S G+F D K++ L VPDL GF LKPY++ TV K P + Sbjct: 133 ETTRRHMSKYLSKSATKRLPLNTKRAKKGYYKGKGCTSEGRLTSKGKFIADPLKKLNLIVPDLEGFTLKPYIARTVDKRPPE 214
BLAST of EWM30388.1 vs. NCBI_GenBank
Match: gi|1173960971|gb|OQS07049.1| (hypothetical protein THRCLA_20228 [Thraustotheca clavata]) HSP 1 Score: 71.633 bits (174), Expect = 3.097e-14 Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 0 Query: 27 PLSPKRTGKGFYKGNKCASTGRINSIGRFRMDERKRVELNVPDLTGFKLKPYVSPTVFKYPV 88 PL+ KR + FYKG C + G +G +RMD K +EL VPDLTGFKLKPYVSP V + PV Sbjct: 22 PLTSKRANRRFYKGKGCRNEGVHGKLGGYRMDLTKMLELEVPDLTGFKLKPYVSPLVSRVPV 83
BLAST of EWM30388.1 vs. NCBI_GenBank
Match: gi|675205813|ref|XP_008911791.1| (hypothetical protein PPTG_15794 [Phytophthora parasitica INRA-310] >gi|566014511|gb|ETI37422.1| hypothetical protein F443_16582 [Phytophthora parasitica P1569] >gi|567951956|gb|ETK77641.1| hypothetical protein L915_16113 [Phytophthora parasitica] >gi|567980631|gb|ETL31086.1| hypothetical protein L916_16009 [Phytophthora parasitica] >gi|568010149|gb|ETL84339.1| hypothetical protein L917_15805 [Phytophthora parasitica] >gi|568040048|gb|ETM37515.1| hypothetical protein L914_15935 [Phytophthora parasitica] >gi|568087970|gb|ETN02834.1| hypothetical protein PPTG_15794 [Phytophthora parasitica INRA-310] >gi|570318247|gb|ETO66195.1| hypothetical protein F444_16557 [Phytophthora parasitica P1976] >gi|570942013|gb|ETP07270.1| hypothetical protein F441_16409 [Phytophthora parasitica CJ01A1] >gi|570972523|gb|ETP35352.1| hypothetical protein F442_16423 [Phytophthora parasitica P10297] >gi|970657913|gb|KUF95739.1| Alpha-aminoadipic semialdehyde synthase [Phytophthora nicotianae]) HSP 1 Score: 71.2478 bits (173), Expect = 3.979e-14 Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 0 Query: 1 MPLLAGINTGFQRLSKYLSKAARKRLPLSPKRTGKGFYKGNKCASTGRINSIGRFRMDERKRVELNVPDLTGFKLKPYVSP 81 M LL G+ TGF R SK+ + + PL+ KR + FYKGN C + G+ GR+ +D+ K ++L VPDLT FKLK YVSP Sbjct: 1 MGLLDGLITGFARKSKFGRSHSLR--PLTSKRANRRFYKGNGCRNEGKHAKRGRYVVDQDKLLQLEVPDLTDFKLKAYVSP 79
BLAST of EWM30388.1 vs. NCBI_GenBank
Match: gi|953495370|emb|CEG43277.1| (mitochondrial ribosomal protein l27 [Plasmopara halstedii]) HSP 1 Score: 71.2478 bits (173), Expect = 4.156e-14 Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 0 Query: 1 MPLLAGINTGFQRLSKYLSKAARKRLPLSPKRTGKGFYKGNKCASTGRINSIGRFRMDERKRVELNVPDLTGFKLKPYVSP 81 M LL G+ GF R SK+ + + PL+ KR + FYKGN C + G GR+ +D+ K+++L VPDLTGFKLK YVSP Sbjct: 1 MGLLDGLVLGFTRKSKFGRSHSLR--PLTSKRANRRFYKGNGCRNEGTHAKRGRYVVDKNKQLQLEVPDLTGFKLKAYVSP 79
BLAST of EWM30388.1 vs. NCBI_GenBank
Match: gi|813157965|ref|XP_012202331.1| (hypothetical protein SPRG_07663 [Saprolegnia parasitica CBS 223.65] >gi|641532943|gb|KDO26950.1| hypothetical protein SPRG_07663 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 70.4774 bits (171), Expect = 9.139e-14 Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 0 Query: 27 PLSPKRTGKGFYKGNKCASTGRINSIGRFRMDERKRVELNVPDLTGFKLKPYVSPTVFKYPVDA 90 PL+ KR + FYKG C + G +G +RMD K +EL VPDLTGFKLKPYVSP V + P A Sbjct: 23 PLTSKRANRRFYKGKGCRNEGVHAKLGGYRMDLTKMLELEVPDLTGFKLKPYVSPLVSRVPPSA 86 The following BLAST results are available for this feature:
BLAST of EWM30388.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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