rna271, rna271 (mRNA) Nannochloropsis gaditana

Overview
Namerna271
Unique Namerna271
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1576
Alignment locationCM002455.1:690906..691765 +

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Properties
Property NameValue
Productmitochondrial ribosomal protein l27
Orig transcript idgnl|cribi|Naga_100026g45.10642.mrna
Orig protein idgnl|cribi|Naga_100026g45.10642
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:690906..691765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100026g45gene260Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna271rna271-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30388.1cds271Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna271 ID=rna271|Name=rna271|organism=Nannochloropsis gaditana|type=mRNA|length=1576bp
AGGGAACGAATCTTGAGAGTACGCTCATATCGCTCGTTTGAAGGCGTGCG
TGTGCGCGATAGCCTCTATGCGTGGATCTCTGATGGCTAAAGGGGGGGGA
GGTCGAAGAGGAACACTGACGATGTCCCACACCAACATCATCCGTAGGCA
AAGAAATCATGCCATTAAGAAAAAAATTGGGCTTGCTACTGGTATCAGCA
TGTGGACTCCATACAGCTGTGGGGTTTATGGCTCAAAATCCTAATAAAGT
CCTTCTCTCGACCATGCCCACTGTCTCACCTTACGGACGGGACGCCACCA
TCGCATGGGCAGCGCCTGTGCTCTTACCCACCAAACCGATGCCGCCGGTA
CAACCAGCGGGCCTTGGATCGAAGTTCTATTTACCAGCTTTTTTGCCTCC
ATGGATTGCGAGGGACACTGTCAGGACCAAATTCTCAGACGACATCTTTT
TTCTCGAGCAGTCTCAGACGTTCGTGAATGTAAGCGTTAACATCAGGTCT
ACAGTGATCCGCCTCAAAAATGGCGATCTCTTCGTGCACGCACCGGTGGC
GCCTACTCCCGAATGCGTTTCACTCATTAAGGAGTTGGGAGAGGTGGCAT
ATGTAGTGCTTCCGGTCACTGCCATCGAGCACAAGGTCTACATGGCTCGC
TTCGCCTCCCTCTTTCCCAAGGCGAAGATTTACGTGGCACCCGGGCAATT
TAGCTGGCCTGTTGACCTTCCGTTGGGTTTTCGAGTAGATGGCGTGCTGA
CCGAGGAGAACAAGAAGAGCATGCCCTTCATCGACGAAATCGACTACACC
GGGTGGATCTTCCGTCCCTTCACAGGCTCCATCAGCGAGGTCGCCTTTTT
CCACCGCAAATCAAGAACTCTCCTAGTCACTGATGCCATCATTTGGATTG
ACGATCAACCGCCAGAAATTCTCAGGCAAGCAGGCGTAGGGCAAGACTTG
TGGAAGAAAATGGCCCTGCAAGCTTGCTTTCTAGGCCCCCCCAATTTGGA
CACGTTCCAGAAGATCAAGCAGCGCCTGATCGTATCGCCCGTCATCCGCG
TTCTAGTGGTCTCCCGGGCCAAAAAGGAGGTGGCTGAGTGGATCAAGCGC
GTGTGCGAGTGGAAATTCGAAAGGGTCATCCCTGCGCATTTTTCGGCGCC
CATCAAGGCGGGCCCAGTCGACCTTCAGGATGCATACGCCTTCCTGGAGG
AAGGAGAGACAGGGGCTGATCGCGGTGGGAAATCACTTCCCTTTGGCTTC
GATTTTTCTGCGTTGTGGCAGGGAAGACAGGGGGCTGTCGGTCGCAAAGG
AAGGGGAGGCAAGAGTGTCCAGTTTCCTGAGCAGGATCTGAAAATTTTGA
AATCCTTGAATAAATTTGTTAGTGCCACAGGGCTGGCGGAGTGAGGAAAT
ACTCGAAGGAAGGGTACAAAGTATTAAAAACTATTAATTTAACATTAACA
TTAAAAAATGAGAAGATAGTGCAGAGTAAGGTTTTAGAATTTTTGTCTAC
ATATTTACATCTAGTGCCCACAAGCACGTATACACGTCCTCTGAAAGAAT
TATACAGGATATATAAGTGTATTCAT
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protein sequence of rna271

>rna271-protein ID=rna271-protein|Name=rna271|organism=Nannochloropsis gaditana|type=polypeptide|length=106bp
MPLLAGINTGFQRLSKYLSKAARKRLPLSPKRTGKGFYKGNKCASTGRIN
SIGRFRMDERKRVELNVPDLTGFKLKPYVSPTVFKYPVDAGIIWPPTKKT
TNFFGV
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mRNA from alignment at CM002455.1:690906..691765+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna271 ID=rna271|Name=rna271|organism=Nannochloropsis gaditana|type=mRNA|length=860bp|location=Sequence derived from alignment at CM002455.1:690906..691765+ (Nannochloropsis gaditana)
TATATGGAGCCGCGACGCGGGACATGATGGCATCGAATGCACGCGTTGAC
TATTGCGCACGCCATGTTGACACCTTTTCAATGCCTTCCATGGACACAGT
AACTCGGGAAGGGCGAACGGCTTGAGCCACGAAAAGTGTTGGGTAAGAGA
GCAGCAGTTGACGCGAGGATTGAGTGGTAATTTGCTTCGATCGTAAACCC
CACAAAGCCATTAAATAGTATGCCCTTACTTGCCGGAATTAATACGGGCT
TCCAGCGTCTCTCCAAATACTTGTCTAAAGCGGCTCGTAAGCGCCTCCCC
CTGAGCCCGAAGCGAACGGGGAAAGGCTTTTACAAAGGCAACAAGTGTGC
ATCCACGGGGCGCATAAACAGCATTGGTGGGTGACGTCCTTCTAAAACAA
CCCTCATTATATTGTATGCTTGAGTGCCGCCATCTTGGTAACCGCAGGCT
TGAAGGAGTCCTAGTCAGTCTCACTCGATCCATTTCGGGCACGCCACAGG
TCGGTTTCGCATGgacgagagaaagagagtAGAACTGAACGTCCCGGATT
TGACAGGCTTCAAGGTAATTTGTCTCATTGGATGGATGTGTAGTAATGTG
TATGTGATCACCGTCCGAACATTTACGATATCCCTTTTTCGAACACTTTA
CAGCTCAAGCCTTATGTGTCACCAACTGTTTTTAAGTATCCTGTCGATGC
TGGAATTATCTGGCCACCAACCAAAAAGACGACGAATTTTTTTGGCGTAT
GATAAATGTGAAAAACGTAATATTTGGAAAAGATCAAAGTCAAACAGAGC
TGTGTGATGTTTGAGCGTTGCCAGGAGCGACTCCAAAGGATTTTGCCTTG
ATACTTTGTA
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Coding sequence (CDS) from alignment at CM002455.1:690906..691765+

>rna271 ID=rna271|Name=rna271|organism=Nannochloropsis gaditana|type=CDS|length=963bp|location=Sequence derived from alignment at CM002455.1:690906..691765+ (Nannochloropsis gaditana)
ATGCCCTTACTTGCCGGAATTAATACGGGCTTCCAGCGTCTCTCCAAATA
CTTGTCTAAAGCGGCTCGTAAGCGCCTCCCCCTGAGCCCGAAGCGAACGG
GGAAAGGCTTTTACAAAGGCAACAAGTGTGCATCCACGGGGCGCATAAAC
AGCATTGGTCGGTTTCGCATGgacgagagaaagagagtAGAACTGAACGT
CCCGGATTTGACAGGCTTCAAGCTCAAGCCTTATGTGTCACCAACTGTTT
TTAAGTATCCTGTCGATGCTGGAATTATCTGGCCACCAACCAAAAAGACG
ACGAATTTTTTTGGCGTATGAATGCCCTTACTTGCCGGAATTAATACGGG
CTTCCAGCGTCTCTCCAAATACTTGTCTAAAGCGGCTCGTAAGCGCCTCC
CCCTGAGCCCGAAGCGAACGGGGAAAGGCTTTTACAAAGGCAACAAGTGT
GCATCCACGGGGCGCATAAACAGCATTGGTCGGTTTCGCATGgacgagag
aaagagagtAGAACTGAACGTCCCGGATTTGACAGGCTTCAAGCTCAAGC
CTTATGTGTCACCAACTGTTTTTAAGTATCCTGTCGATGCTGGAATTATC
TGGCCACCAACCAAAAAGACGACGAATTTTTTTGGCGTATGAATGCCCTT
ACTTGCCGGAATTAATACGGGCTTCCAGCGTCTCTCCAAATACTTGTCTA
AAGCGGCTCGTAAGCGCCTCCCCCTGAGCCCGAAGCGAACGGGGAAAGGC
TTTTACAAAGGCAACAAGTGTGCATCCACGGGGCGCATAAACAGCATTGG
TCGGTTTCGCATGgacgagagaaagagagtAGAACTGAACGTCCCGGATT
TGACAGGCTTCAAGCTCAAGCCTTATGTGTCACCAACTGTTTTTAAGTAT
CCTGTCGATGCTGGAATTATCTGGCCACCAACCAAAAAGACGACGAATTT
TTTTGGCGTATGA
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Synonyms
Publications