EWM30428.1, cds245 (CDS) Nannochloropsis gaditana

Overview
NameEWM30428.1
Unique Namecds245
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:623958..624833 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30428.1
Productputative alpha-ketoglutarate-dependent dioxygenase abh7
Orig transcript idgnl|cribi|Naga_100210g5.8076.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:623958..624833 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006810transport
GO:0016043cellular component organization
GO:0008152metabolic process
GO:0008219cell death
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR027450AlkB-like
Homology
BLAST of EWM30428.1 vs. NCBI_GenBank
Match: gi|585113089|gb|EWM30428.1| (putative alpha-ketoglutarate-dependent dioxygenase abh7 [Nannochloropsis gaditana])

HSP 1 Score: 600.512 bits (1547), Expect = 0.000e+0
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 0
Query:    1 MVWPTSWQIPCHASCLVLYIHRMVFKLSYFAFRSGAGRWMYTLVLKCGRLRSGPAYRMIALSASGESPFIDFSNCRDNTLDSSSIRVLPDVITIEEEARLVAELEGNMRRRRYVANHWDSVIERYREVEKRAWIDPLNAKIAQRIKSVILQTLNKSLATRFLPVHVIDLAEDGFIKPHVDSSKFSGGLVCGLSLCSSAIMQLKGDVEQGQNPDSIVRLLLRPRSLYILCGNARYRYAHEILATRPEGEERWVDGRRVKRSRRLSLIFRDEREDQGRREEACETDMKKKQHE 291
            MVWPTSWQIPCHASCLVLYIHRMVFKLSYFAFRSGAGRWMYTLVLKCGRLRSGPAYRMIALSASGESPFIDFSNCRDNTLDSSSIRVLPDVITIEEEARLVAELEGNMRRRRYVANHWDSVIERYREVEKRAWIDPLNAKIAQRIKSVILQTLNKSLATRFLPVHVIDLAEDGFIKPHVDSSKFSGGLVCGLSLCSSAIMQLKGDVEQGQNPDSIVRLLLRPRSLYILCGNARYRYAHEILATRPEGEERWVDGRRVKRSRRLSLIFRDEREDQGRREEACETDMKKKQHE
Sbjct:    1 MVWPTSWQIPCHASCLVLYIHRMVFKLSYFAFRSGAGRWMYTLVLKCGRLRSGPAYRMIALSASGESPFIDFSNCRDNTLDSSSIRVLPDVITIEEEARLVAELEGNMRRRRYVANHWDSVIERYREVEKRAWIDPLNAKIAQRIKSVILQTLNKSLATRFLPVHVIDLAEDGFIKPHVDSSKFSGGLVCGLSLCSSAIMQLKGDVEQGQNPDSIVRLLLRPRSLYILCGNARYRYAHEILATRPEGEERWVDGRRVKRSRRLSLIFRDEREDQGRREEACETDMKKKQHE 291          
BLAST of EWM30428.1 vs. NCBI_GenBank
Match: gi|985421181|ref|XP_015376001.1| (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial [Diuraphis noxia])

HSP 1 Score: 149.828 bits (377), Expect = 3.411e-40
Identity = 73/189 (38.62%), Postives = 122/189 (64.55%), Query Frame = 0
Query:   83 SSIRVLPDVITIEEEARLVAELEGNMRRRRYVANHWDSVIERYREVEKRAWIDPLNAKIAQRIKSVILQTLNKSLATRFLPVHVIDLAEDGFIKPHVDSSKFSGGLVCGLSLCSSAIMQLKGDVEQGQNPDSIVRLLLRP-RSLYILCGNARYRYAHEILATRPEGEERWVDGRRVKRSRRLSLIFRDE 270
            SS  ++PD+++++EE+RL+ E+E +++R RY  +HWD  I  YRE E   W D  N+ + Q++K+ +    N+S+  +   VH++DL  +G++KPH+DS +F G ++ GLSL S ++M+L  +    + PD+ V   L P RSLYI+  +ARY+Y HEIL+   +G       R++ R RR+S++ R+E
Sbjct:   70 SSFTIVPDIVSVDEESRLIDEIEKSLKRLRYQHDHWDDAIHGYRETEIITWKDQNNSNVIQKLKNRVFA--NESITEQMQRVHILDLCNNGYVKPHIDSVRFCGNIIAGLSLLSDSVMRLADE----KCPDTYVVYALLPRRSLYIMKDSARYQYTHEILS---DGAPTVFSDRQIVRERRVSIVMRNE 249          
BLAST of EWM30428.1 vs. NCBI_GenBank
Match: gi|1210520941|dbj|GAX20174.1| (alkylated DNA repair protein alkB homolog 7 [Fistulifera solaris])

HSP 1 Score: 146.747 bits (369), Expect = 8.253e-40
Identity = 92/207 (44.44%), Postives = 119/207 (57.49%), Query Frame = 0
Query:   69 FIDFSNCRDNTLDSSSIRVLPDVITIEEEARLVAELEGNMRRRRYVANHWDSVIERYREVEKRAWIDPLNAKIAQRIKSVILQTLNKSLATRFLPVHVIDLAEDGFIKPHVDSSKFSGGLVCGLSLCSSAIMQLKGDVEQGQNPDSIVR----LLLRPRSLYILCGNARYRYAHEILATRPEGEERWVDGRRVKRSRRLSLIFRDER 271
             +D S+  DN  D  S  V PDVIT+ E   LVA +E  ++RRRY   HWDSVI +Y+EVE       +N  + +RI+  +     K +   +LP H IDL +DG +  HVDS +FSG LV GLSL SS+IM+LK D     NPD  V+    L L  RSLY+L G +RY Y HE+L  R         G  V R RR+S+IFRD +
Sbjct:    1 MVDNSHAPDN-FDQQSAVVFPDVITVSEHDALVAHVEPLLKRRRYEKGHWDSVILQYKEVELAEEASAVN-DVFERIRKELEPY--KRMEAPWLPCHAIDLRKDGELNEHVDSVRFSGDLVAGLSLLSSSIMRLKPDA--STNPDESVKGHVDLYLPSRSLYVLSGVSRYSYTHELLPGR-----SLFKGNAVDRDRRISIIFRDAK 196          
BLAST of EWM30428.1 vs. NCBI_GenBank
Match: gi|328696562|ref|XP_001942777.2| (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial [Acyrthosiphon pisum])

HSP 1 Score: 148.288 bits (373), Expect = 1.354e-39
Identity = 76/206 (36.89%), Postives = 127/206 (61.65%), Query Frame = 0
Query:   72 FSNCRDNTLD------SSSIRVLPDVITIEEEARLVAELEGNMRRRRYVANHWDSVIERYREVEKRAWIDPLNAKIAQRIKSVILQTLNKSLATRFLPVHVIDLAEDGFIKPHVDSSKFSGGLVCGLSLCSSAIMQLKGDVEQGQNPDSIVRLLLRP-RSLYILCGNARYRYAHEILATRPEGEERWVDGRRVKRSRRLSLIFRDE 270
            F  C +N +D       SS  ++PD+++++EE+RL+ E+E +++R RY  +HWD  I  YRE E   W D  N+ + Q++++   +   +S+  +   VHV+DL + G++KPH+DS +F G ++ GLSL S ++M+L  +    ++PD  V   L P RSLYI+  +ARY+Y HEIL+   +G       R++ R RR+S++ R+E
Sbjct:   54 FPKCINNLVDIKLQQFDSSFTIVPDIVSVDEESRLIDEIEKSLKRLRYQHDHWDDAIHGYRETEIITWKDQNNSNVIQKLRN---RVFAESITEQMQRVHVLDLCDKGYVKPHIDSIRFCGNIIAGLSLLSDSVMRLADE----KHPDIYVVYALLPRRSLYIMKDSARYQYTHEILS---DGAPSVFSDRQIVRERRVSIVMRNE 249          
BLAST of EWM30428.1 vs. NCBI_GenBank
Match: gi|1176303731|ref|XP_020654392.1| (alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial [Pogona vitticeps])

HSP 1 Score: 143.665 bits (361), Expect = 2.535e-38
Identity = 82/183 (44.81%), Postives = 109/183 (59.56%), Query Frame = 0
Query:   87 VLPDVITIEEEARLVAELEGNMRRRRYVANHWDSVIERYREVEKRAWIDPLNAKIAQRIKSVILQTLNKSLATRFLPVHVIDLAEDGFIKPHVDSSKFSGGLVCGLSLCSSAIMQLKGDVEQGQNPDSIVRLLLRPRSLYILCGNARYRYAHEILATRPEGEERWVDGRRVKRSRRLSLIFRD 269
            V+PD ++  EEA L  E+E   RRRRY   HWD  I +YRE EK  W    + +I QR++          L      VHV+DL + G+IKPHVDS KF G  + GLSL SS++M L  +    QNP+  + LLL  RSLYIL G ARY + HEIL    + EE + +GR++ R RR+S+I R+
Sbjct:   41 VVPDFLSEAEEALLAQEVEPQFRRRRYEDGHWDGAIHKYRETEKSHWSKE-SHEILQRVRDAAFPPGMPQLTQ----VHVLDLHKSGYIKPHVDSVKFCGCTIAGLSLLSSSVMHLVSE----QNPEDWLDLLLERRSLYILRGPARYEFTHEIL----KDEESFFNGRKITRERRISVICRN 210          
BLAST of EWM30428.1 vs. NCBI_GenBank
Match: gi|669161248|ref|XP_008616186.1| (hypothetical protein SDRG_11910 [Saprolegnia diclina VS20] >gi|530732091|gb|EQC30333.1| hypothetical protein SDRG_11910 [Saprolegnia diclina VS20])

HSP 1 Score: 144.436 bits (363), Expect = 2.679e-38
Identity = 89/201 (44.28%), Postives = 120/201 (59.70%), Query Frame = 0
Query:   70 IDFSNCRDNTLDSSSIRVLPDVITIEEEARLVAELEGNMRRRRYVANHWDSVIERYREVEKRAWIDPLNAKIAQ-RIKSVILQTLNKSLATRFLPVHVIDLAEDGFIKPHVDSSKFSGGLVCGLSLCSSAIMQLKGDVEQGQNPDSIVRLLLRPRSLYILCGNARYRYAHEILATRPEGEERWVDGRRVKRSRRLSLIFRD 269
            +D S C D  L  S ++V+ +VI+ ++E RL  E    +RRRRY  +HWD VI  ++E+E   W     A +A  R  SV+   L     T F  VHVIDLAE G+IKPHVDS KFSG +V G+SL S ++M+ K +V     P  +  LL R RS Y + G  RYRY HEIL     G + +  GR V+R+RR+S++FRD
Sbjct:   34 VDRSLCCDPFLQPSDLQVMTEVISEDDEQRLADEAATLLRRRRYETDHWDQVIVNFKEMETTKWSAEAKAILAHLRSLSVMPPQL-----TYFPTVHVIDLAEAGYIKPHVDSIKFSGQIVAGISLLSPSVMRFKEEV----GPSQLDALLPR-RSFYCMSGGVRYRYTHEILP----GHQTF-QGRDVERTRRISIMFRD 219          
BLAST of EWM30428.1 vs. NCBI_GenBank
Match: gi|698822193|ref|XP_009844125.1| (hypothetical protein, variant 1 [Aphanomyces astaci] >gi|574100777|gb|ETV66350.1| hypothetical protein, variant 1 [Aphanomyces astaci])

HSP 1 Score: 144.821 bits (364), Expect = 2.974e-38
Identity = 89/204 (43.63%), Postives = 126/204 (61.76%), Query Frame = 0
Query:   66 ESPFIDFSNCRDNTLDSSSIRVLPDVITIEEEARLVAELEGNMRRRRYVANHWDSVIERYREVEKRAWIDPLNAKIAQRIKSVILQTLNKSLATRFLPVHVIDLAEDGFIKPHVDSSKFSGGLVCGLSLCSSAIMQLKGDVEQGQNPDSIVRLLLRPRSLYILCGNARYRYAHEILATRPEGEERWVDGRRVKRSRRLSLIFRD 269
            +SP +D S C+D  L  + ++V+ DV+T++EE  L  E    +RRRRY  NHWD VI  ++E+E   W     A I  R+++  L  L + L   F PVHVIDLAE G+IKPHVDS KFSG +V GL+L S A+M+      + ++ D+ + LLL  RS Y + G  RYRY HEIL     G + +  G+ V+R+RR+S++ RD
Sbjct:   67 DSPLVDRSMCKDAALVWNDLQVMQDVLTLDEERLLADEAAALLRRRRYEVNHWDQVIVNFKEMETVKWSQEA-ADILARVRT--LPILPQDLEY-FPPVHVIDLAEAGYIKPHVDSIKFSGQVVAGLNLLSPAVMRF-----EEEHGDNRIDLLLPRRSFYCMRGGVRYRYTHEILP----GVQHF-QGQPVERTRRISIMIRD 256          
BLAST of EWM30428.1 vs. NCBI_GenBank
Match: gi|826488235|ref|XP_012539538.1| (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial [Monomorium pharaonis])

HSP 1 Score: 143.28 bits (360), Expect = 6.421e-38
Identity = 80/194 (41.24%), Postives = 124/194 (63.92%), Query Frame = 0
Query:   83 SSIRVLPDVITIEEEARLVAELEGNMRRRRYVANHWDSVIERYREVEKRAWIDPLNAKIAQRI--KSVILQTLNKSLATRFLPVHVIDLAEDGFIKPHVDSSKFSGGLVCGLSLCSSAIMQLKGDVEQGQNPDSIVRLLLRPRSLYILCGNARYRYAHEILATRPEGEERWVDGRRVKRSRRLSLIFRDEREDQ 274
            +++RVLP+ I+ EEE  +V E++  M+R RY  +HWD+ I  YRE E + W +  ++K+  R+  K+   +T++ SL      VH++DLA +G+IKPH+DS +F GG++ GLSL S ++M+L     +G   + +   LL  RSLYI+ G ARY+Y HEIL +    EE + +GR V + RR+S+I R E + Q
Sbjct:   54 NTMRVLPNFISEEEEDIMVQEVDPYMKRLRYEYSHWDNAIHGYRETEWKKWSEK-SSKVLDRVRRKAFPPETIHLSL------VHILDLAPEGWIKPHIDSVRFCGGIIAGLSLLSDSVMKL---AMEGHEKERVACFLLPRRSLYIMSGVARYKYNHEILKS----EESYFEGRHVPKGRRISIICRSEADPQ 233          
BLAST of EWM30428.1 vs. NCBI_GenBank
Match: gi|568041098|gb|ETM38522.1| (hypothetical protein L914_15193 [Phytophthora parasitica])

HSP 1 Score: 142.51 bits (358), Expect = 1.553e-37
Identity = 91/237 (38.40%), Postives = 135/237 (56.96%), Query Frame = 0
Query:   43 LVLKCGRLRSGPAYRMIALSASGESPF---------IDFSNCRDNTLDSSSIRVLPDVITIEEEARLVAELEGNMRRRRYVANHWDSVIERYREVEKRAWIDPLNAKIAQRIKSVILQTLNKSLATRFLPVHVIDLAEDGFIKPHVDSSKFSGGLVCGLSLCSSAIMQLKGDVEQGQNPDSIVRLLLRPRSLYILCGNARYRYAHEILATRPEGEERWVDGRRVKRSRRLSLIFRDE 270
            L L+  R    P  R+++ SA    P          +D ++C D  +    ++++ DVIT +EE  L  E    ++RRR+  NHWD VI +Y+E+E+  W      +I Q+++ V +  L + L T F  VHVI+LAEDG+IKPHVDS KFSG +V G++L S +IM+ K   E G   DS++   LR RS+Y++ G  RY Y HEIL     G + +     V R+ R+S++ RDE
Sbjct:    2 LSLRPLRCSLVPLRRLLSSSAVAAPPSQSLWQDVYNLDATHCHDPLVSEDDLQLMLDVITDDEEKVLSDECARILKRRRFEENHWDDVIIKYKEMERSRW-STETQRILQKVREVAI--LPRDL-TYFPAVHVIELAEDGYIKPHVDSIKFSGRVVAGINLLSPSIMRFKE--EHG---DSVIDAYLRRRSMYMMTGRVRYHYTHEILP----GAQVFRGEVPVNRTHRISIMLRDE 225          
BLAST of EWM30428.1 vs. NCBI_GenBank
Match: gi|568011189|gb|ETL85367.1| (hypothetical protein L917_15059 [Phytophthora parasitica])

HSP 1 Score: 142.51 bits (358), Expect = 1.747e-37
Identity = 91/237 (38.40%), Postives = 135/237 (56.96%), Query Frame = 0
Query:   43 LVLKCGRLRSGPAYRMIALSASGESPF---------IDFSNCRDNTLDSSSIRVLPDVITIEEEARLVAELEGNMRRRRYVANHWDSVIERYREVEKRAWIDPLNAKIAQRIKSVILQTLNKSLATRFLPVHVIDLAEDGFIKPHVDSSKFSGGLVCGLSLCSSAIMQLKGDVEQGQNPDSIVRLLLRPRSLYILCGNARYRYAHEILATRPEGEERWVDGRRVKRSRRLSLIFRDE 270
            L L+  R    P  R+++ SA    P          +D ++C D  +    ++++ DVIT +EE  L  E    ++RRR+  NHWD VI +Y+E+E+  W      +I Q+++ V +  L + L T F  VHVI+LAEDG+IKPHVDS KFSG +V G++L S +IM+ K   E G   DS++   LR RS+Y++ G  RY Y HEIL     G + +     V R+ R+S++ RDE
Sbjct:    2 LSLRPLRCSLVPLRRLLSSSAVAAPPSQSLWQDVYNLDATHCHDPLVSEDDLQLMLDVITDDEEKVLSDECARILKRRRFEENHWDDVIIKYKEMERSRW-STETQRILQKVREVAI--LPRDL-TYFPAVHVIELAEDGYIKPHVDSIKFSGRVVAGINLLSPSIMRFKE--EHG---DSVIDAYLRRRSMYMMTGRVRYHYTHEILP----GAQVFRGEVPVNRTHRISIMLRDE 225          
The following BLAST results are available for this feature:
BLAST of EWM30428.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113089|gb|EWM30428.1|0.000e+0100.00putative alpha-ketoglutarate-dependent dioxygenase... [more]
gi|985421181|ref|XP_015376001.1|3.411e-4038.62PREDICTED: alpha-ketoglutarate-dependent dioxygena... [more]
gi|1210520941|dbj|GAX20174.1|8.253e-4044.44alkylated DNA repair protein alkB homolog 7 [Fistu... [more]
gi|328696562|ref|XP_001942777.2|1.354e-3936.89PREDICTED: alpha-ketoglutarate-dependent dioxygena... [more]
gi|1176303731|ref|XP_020654392.1|2.535e-3844.81alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]
gi|669161248|ref|XP_008616186.1|2.679e-3844.28hypothetical protein SDRG_11910 [Saprolegnia dicli... [more]
gi|698822193|ref|XP_009844125.1|2.974e-3843.63hypothetical protein, variant 1 [Aphanomyces astac... [more]
gi|826488235|ref|XP_012539538.1|6.421e-3841.24PREDICTED: alpha-ketoglutarate-dependent dioxygena... [more]
gi|568041098|gb|ETM38522.1|1.553e-3738.40hypothetical protein L914_15193 [Phytophthora para... [more]
gi|568011189|gb|ETL85367.1|1.747e-3738.40hypothetical protein L917_15059 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna245rna245Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications