rna232, rna232 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna232
Unique Name	rna232
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1176
Alignment location	CM002455.1:585836..588041 +

Link to JBrowse

Properties


Property Name	Value
Product	fucosyltransferase
Orig transcript id	gnl\|cribi\|Naga_100100g8.8911.mrna
Orig protein id	gnl\|cribi\|Naga_100100g8.8911
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:585836..588041 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100100g8	gene221	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna232	rna232-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30443.1	cds232	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:585836..588041+
coding sequence from alignment at CM002455.1:585836..588041+

mRNA sequence

>rna232 ID=rna232|Name=rna232|organism=Nannochloropsis gaditana|type=mRNA|length=1176bp
ATGTCCACGAAGGGCATCGGAACGGAGGATAGCGCGATCGGTTACTTCAA
ATTCAAAGGAGCTACCCGAGATGACGAGGCGGAGGACCCTCTCCTGATAG
AAATGCGCCAGACCAAAAACCTGGCCAGCCACTCAAACGGCACTGGGACT
TCATTTGTCGCGGATGCTGCTACTTCTTCGTCTTCAGTATCGACAACATC
ATCAACTCCGACGTCTTTGAATGCGGCGGGTGCCCCGACGAGTTCTAACG
AATCCACTTCGGCAGCAATTATCTCCTGCTTCGCTTATACTTTCTGCTCC
ATTACCATGGTCCTTACCAATAAGGCCCTGGCGTCGCAGTACGACGCCGA
CATCGACTTCCTTGTGATTGCATTTCAAAGTCTCTGTGCGGTTTTGCTTG
TCTTATCGTGCGATACCCTGGGGTTCATTCAGCATGGAAGTGCCAAATTT
GACCCCAGCGTGGCCCTCCAATGGCTCCCGGTCAACCTCTTCTTTGTCAG
CATGCTCTCCACGGGGTTCCTGAGCCTCAGGTACCTGAATGTCCCCATGG
TTACCATATTCAAAAACCTGACCAACGTGGGAATAATGTGGGGCGAATGG
TCTTTGTACGGCGCGCACGTCTCGCTGGGCGCTATCCTTGCCTGCGCCAT
CATGATCTTGGGTGCCGTATTGGCCGCCGCCAACGATATCACATTTTCGG
GCATTGGCTATTTCTGGATGTTATCAAATTGTGTGTGCTGCGCGGGATAC
GTCCTGTACATGAAGCACGCCACTAAGACGGTGCGCCTGCCAAAGTTTGC
CATGGTCTTCTACAACAATCTCTTGTCTCTGCCTATTTTGCTGGCGGGGG
CAGCGGTCCGAGGGGAATATACGACATTTCTCTGGAGCGAAGACCTGCAC
ACAGCAGCCTACGTGAGCCTATCTCTGTATGCAGGCTTGGTGGGGTTCGC
CCTGAATTTGGCCACATTGTGGTGCGTATCCAACAACTCGGCCACCACCT
ATTCCGTGGTAGGAGCCATGAACAAAATTCCACTCGCGGTCGTCGGATGG
CTGCTTTTCAGGACGCCAATAACGCAAAAGGCCTTGATCTTTCTCTCCTT
GAGTATGTGCGGGGGATTTTTGTATACCTACACGAAGCTTCGAGAGGCGA
ACCAGGCGGCCGGCCTGCCGAGGTGA

protein sequence of rna232

>rna232-protein ID=rna232-protein|Name=rna232|organism=Nannochloropsis gaditana|type=polypeptide|length=563bp
MMRRRYDGESLEESSDYVDASGSDSDEDSSVLGHGLKESQAEWLNCTGRR
PWVLLVFVASAIGFVMVSFSQETTVSSRSFTPFAALRGVYPRMVAPPVLG
DAAISPREKKIKKKDVFNSVNSVDKVWVDEEANPFDKNWEKFPPSELADH
CGASDIFYWQRYDPDLEKVVNPWAALGPEKKYVTFEPDRGGWNNIRMAME
VVLVFAYATGRTLVMPPEQNMYLLNKGSDPGDNTLHFADFFYLHRLQEKM
EMIEMKDFLETEAVTGNLGALPPSNSTDLRRDVLWKYLEGLEVGTTHWKP
FDVCLAFPETPGKPIEDHSAEQQERLKEFCGKRTPVHYNETLQDAKVIHF
GAGQGSRVLAHFYTFEHFMDPALDRAVKRFVRSYIHYRDEVFCAAGRIIA
AMETEAGPGGYKALHIRRGDLQFKEVKIPAEKIIANTKDILKENETIYIA
TDETDEAYLDVFRKRFNVFFLKDFHERVGLPKLNQNYMGMLEQIVCSRSQ
VFIGTWFSTFTGYITRMRGYYGFDYRTNWYHFGLRKDSFQTEYHPRDPWY
VREWPEGWVNIDE

mRNA from alignment at CM002455.1:585836..588041+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna232 ID=rna232|Name=rna232|organism=Nannochloropsis gaditana|type=mRNA|length=2206bp|location=Sequence derived from alignment at CM002455.1:585836..588041+ (Nannochloropsis gaditana)
AGGGCTGCAGCGACAGCGGCGTCGTCGCATCCTCCCAGAAGGGAATGGGC
CTTTTTAAAAATCTGAACCCCCCTAAACGCTACAATTTCGGATCAATGTG
CCCTATTAACTACCGGCACATTTTCAAGGCATgtcagagagagagagaga
gcgagaGAGCAAGTTTTGCATACTCAATCATTTCGATTTACAAGCCTGTC
CTGCACCTCTAAACTCTGCagttcttcttccccatctcACGCGTACATCC
ACTAGACACTATGATGCGGCGCCGATACGACGGAGAGTCTTTAGAGGAAA
GCTCTGACTATGTTGATGCATCTGGGTCTGACTCGGATGAGGACTCTTCA
GTCTTGGGGCATGGTTTGAAAGAGTCTCAGGCGGAATGGCTGAACTGCAC
GGGTCGAAGGCCATGGGTGTTGTTAGTTTTCGTTGCGAGCGCAATAGGCT
TTGTCATGGTCTCTTTTTCCCAAGAGACAACGGTCTCGTCAAGATCCTTC
ACTCCCTTTGCGGCTTTGCGGGGGGTATACCCTCGAATGGTAGCCCCGCC
AGTCCTAGGAGATGCGGCGATCTCTccgagggagaaaaaaatcaaGAAAA
AAGACGTCTTCAACAGTGTTAATAGCGTGGACAAGGTGTgggtggatgag
gaggcgaACCCTTTCGACAAAAACTGGGAGaaatttcctccttccgagCT
TGCCGACCATTGCGGTGCCTCCGACATCTTCTACTGGCAGCGCTACGACC
CCGACCTCGAGAAAGTGGTGAATCCCTGGGCCGCGCTCGGTCCAGAAAAG
AAGTATGTGACATTCGAGCCAGATCGCGGGGGCTGGAACAACATCCGAAT
GGccatggaggtggtgctcGTCTTCGCGTATGCCACGGGCCGCACGCTCG
TCATGCCGCCCGAGCAGAACATGTACCTGCTGAACAAAGGCAGCGATCCG
GGGGACAACACCTTGCATTTCGCTGATTTCTTTTACCTGCACCGGCTTca
ggaaaaaatggagaTGATCGAAATGAAGGACTTTCTCGAGACAGAGGCCG
TGACGGGGAACCTGggcgcgctccctccctccaacagCACGGACCTTCGG
AGGGACGTGCTCTGGAAGTAtttggagggcctggaggtgGGGACGACGCA
TTGGAAGCCTTTTGACGTttgcttggctttccctGAGACCCCGGGGAAGC
CTATCGAAGATCATTCGGCCGAGCAGCAGGAGCGACTGAAGGAGTTCTGC
GGGAAGCGAACGCCCGTCCACTACAACGAGACCTTGCAAGACGCGAAAGT
CATTCATTTCGGCGCGGGTCAAGGGTCGCGCGTCCTGGCGCATTTCTACA
CCTTCGAGCACTTCATGGACCCGGCCCTGGACAGGGCGGTGAAGCGCTTT
GTCAGGTAGGATGGTAGGGAGTCGCAGAAGCTGTCACAGGTTTCTTCACG
CATTCTCGTGTGAACTAATCGTGCCCATCacagctcttcctcccctacat
GCCGCCCCCTCACCCCTGGCTCACCCCATTCCcacaccctctcctccacc
atggccaCGTAGGAGCTACATCCACTATAGAGACGAAGTCTTCTGTGCGG
CTGGTCGCATTATTGCCGCCATGGAGACTGAAGCCGGACCTGGAGGCTAC
AAGGCCCTGCATATCCGCAGAGGCGATCTGCAGTTCAAGGAAGTAAAAAT
ACCCGCGGAGAAGATAATTGCCAACACGAAAGATATCTTGAAGGAAAATG
AGACAATCTATATCGCCACGGATGAGACAGATGAAGCTTATTTGGACGTC
TTCCGAAAGCGTTTTaatgtcttcttcctcaaggATTTCCACGAGCGCGT
TGGGTTGCCCAAGTTAAATCAAAACTACATGGGCATGCTCGAGCAAATTG
TGTGCTCCAGATCACAGGTTTTCATCGGAACATGGTTTTCCACCTTCACT
GGATACATAACAAGAATGCGAGGCTATTACGGCTTCGACTACCGGACGAA
TTGGTACCATTTTGGCCTGAGAAAAGACTCCTTTCAAACAGAATACCATC
CACGGGACCCGTGGTACGTGCGAGAATGGCCAGAGGGCTGGGTGAATATT
GATGAGTAAAATCTCTGCCGAAAAGTAGCTGGCTAGAGGAAATTGTCAGG
ATATTAAGATGTTTGCTTGAATCGAGAAGAAAcaaatgggaggaggttgg
gccTTC

Coding sequence (CDS) from alignment at CM002455.1:585836..588041+

>rna232 ID=rna232|Name=rna232|organism=Nannochloropsis gaditana|type=CDS|length=3384bp|location=Sequence derived from alignment at CM002455.1:585836..588041+ (Nannochloropsis gaditana)
ATGATGCGGCGCCGATACGACGGAGAGTCTTTAGAGGAAAGCTCTGACTA
TGTTGATGCATCTGGGTCTGACTCGGATGAGGACTCTTCAGTCTTGGGGC
ATGGTTTGAAAGAGTCTCAGGCGGAATGGCTGAACTGCACGGGTCGAAGG
CCATGGGTGTTGTTAGTTTTCGTTGCGAGCGCAATAGGCTTTGTCATGGT
CTCTTTTTCCCAAGAGACAACGGTCTCGTCAAGATCCTTCACTCCCTTTG
CGGCTTTGCGGGGGGTATACCCTCGAATGGTAGCCCCGCCAGTCCTAGGA
GATGCGGCGATCTCTccgagggagaaaaaaatcaaGAAAAAAGACGTCTT
CAACAGTGTTAATAGCGTGGACAAGGTGTgggtggatgaggaggcgaACC
CTTTCGACAAAAACTGGGAGaaatttcctccttccgagCTTGCCGACCAT
TGCGGTGCCTCCGACATCTTCTACTGGCAGCGCTACGACCCCGACCTCGA
GAAAGTGGTGAATCCCTGGGCCGCGCTCGGTCCAGAAAAGAAGTATGTGA
CATTCGAGCCAGATCGCGGGGGCTGGAACAACATCCGAATGGccatggag
gtggtgctcGTCTTCGCGTATGCCACGGGCCGCACGCTCGTCATGCCGCC
CGAGCAGAACATGTACCTGCTGAACAAAGGCAGCGATCCGGGGGACAACA
CCTTGCATTTCGCTGATTTCTTTTACCTGCACCGGCTTcaggaaaaaatg
gagaTGATCGAAATGAAGGACTTTCTCGAGACAGAGGCCGTGACGGGGAA
CCTGggcgcgctccctccctccaacagCACGGACCTTCGGAGGGACGTGC
TCTGGAAGTAtttggagggcctggaggtgGGGACGACGCATTGGAAGCCT
TTTGACGTttgcttggctttccctGAGACCCCGGGGAAGCCTATCGAAGA
TCATTCGGCCGAGCAGCAGGAGCGACTGAAGGAGTTCTGCGGGAAGCGAA
CGCCCGTCCACTACAACGAGACCTTGCAAGACGCGAAAGTCATTCATTTC
GGCGCGGGTCAAGGGTCGCGCGTCCTGGCGCATTTCTACACCTTCGAGCA
CTTCATGGACCCGGCCCTGGACAGGGCGGTGAAGCGCTTTGTCAGGAGCT
ACATCCACTATAGAGACGAAGTCTTCTGTGCGGCTGGTCGCATTATTGCC
GCCATGGAGACTGAAGCCGGACCTGGAGGCTACAAGGCCCTGCATATCCG
CAGAGGCGATCTGCAGTTCAAGGAAGTAAAAATACCCGCGGAGAAGATAA
TTGCCAACACGAAAGATATCTTGAAGGAAAATGAGACAATCTATATCGCC
ACGGATGAGACAGATGAAGCTTATTTGGACGTCTTCCGAAAGCGTTTTaa
tgtcttcttcctcaaggATTTCCACGAGCGCGTTGGGTTGCCCAAGTTAA
ATCAAAACTACATGGGCATGCTCGAGCAAATTGTGTGCTCCAGATCACAG
GTTTTCATCGGAACATGGTTTTCCACCTTCACTGGATACATAACAAGAAT
GCGAGGCTATTACGGCTTCGACTACCGGACGAATTGGTACCATTTTGGCC
TGAGAAAAGACTCCTTTCAAACAGAATACCATCCACGGGACCCGTGGTAC
GTGCGAGAATGGCCAGAGGGCTGGGTGAATATTGATGAGTAAATGATGCG
GCGCCGATACGACGGAGAGTCTTTAGAGGAAAGCTCTGACTATGTTGATG
CATCTGGGTCTGACTCGGATGAGGACTCTTCAGTCTTGGGGCATGGTTTG
AAAGAGTCTCAGGCGGAATGGCTGAACTGCACGGGTCGAAGGCCATGGGT
GTTGTTAGTTTTCGTTGCGAGCGCAATAGGCTTTGTCATGGTCTCTTTTT
CCCAAGAGACAACGGTCTCGTCAAGATCCTTCACTCCCTTTGCGGCTTTG
CGGGGGGTATACCCTCGAATGGTAGCCCCGCCAGTCCTAGGAGATGCGGC
GATCTCTccgagggagaaaaaaatcaaGAAAAAAGACGTCTTCAACAGTG
TTAATAGCGTGGACAAGGTGTgggtggatgaggaggcgaACCCTTTCGAC
AAAAACTGGGAGaaatttcctccttccgagCTTGCCGACCATTGCGGTGC
CTCCGACATCTTCTACTGGCAGCGCTACGACCCCGACCTCGAGAAAGTGG
TGAATCCCTGGGCCGCGCTCGGTCCAGAAAAGAAGTATGTGACATTCGAG
CCAGATCGCGGGGGCTGGAACAACATCCGAATGGccatggaggtggtgct
cGTCTTCGCGTATGCCACGGGCCGCACGCTCGTCATGCCGCCCGAGCAGA
ACATGTACCTGCTGAACAAAGGCAGCGATCCGGGGGACAACACCTTGCAT
TTCGCTGATTTCTTTTACCTGCACCGGCTTcaggaaaaaatggagaTGAT
CGAAATGAAGGACTTTCTCGAGACAGAGGCCGTGACGGGGAACCTGggcg
cgctccctccctccaacagCACGGACCTTCGGAGGGACGTGCTCTGGAAG
TAtttggagggcctggaggtgGGGACGACGCATTGGAAGCCTTTTGACGT
ttgcttggctttccctGAGACCCCGGGGAAGCCTATCGAAGATCATTCGG
CCGAGCAGCAGGAGCGACTGAAGGAGTTCTGCGGGAAGCGAACGCCCGTC
CACTACAACGAGACCTTGCAAGACGCGAAAGTCATTCATTTCGGCGCGGG
TCAAGGGTCGCGCGTCCTGGCGCATTTCTACACCTTCGAGCACTTCATGG
ACCCGGCCCTGGACAGGGCGGTGAAGCGCTTTGTCAGGAGCTACATCCAC
TATAGAGACGAAGTCTTCTGTGCGGCTGGTCGCATTATTGCCGCCATGGA
GACTGAAGCCGGACCTGGAGGCTACAAGGCCCTGCATATCCGCAGAGGCG
ATCTGCAGTTCAAGGAAGTAAAAATACCCGCGGAGAAGATAATTGCCAAC
ACGAAAGATATCTTGAAGGAAAATGAGACAATCTATATCGCCACGGATGA
GACAGATGAAGCTTATTTGGACGTCTTCCGAAAGCGTTTTaatgtcttct
tcctcaaggATTTCCACGAGCGCGTTGGGTTGCCCAAGTTAAATCAAAAC
TACATGGGCATGCTCGAGCAAATTGTGTGCTCCAGATCACAGGTTTTCAT
CGGAACATGGTTTTCCACCTTCACTGGATACATAACAAGAATGCGAGGCT
ATTACGGCTTCGACTACCGGACGAATTGGTACCATTTTGGCCTGAGAAAA
GACTCCTTTCAAACAGAATACCATCCACGGGACCCGTGGTACGTGCGAGA
ATGGCCAGAGGGCTGGGTGAATATTGATGAGTAA

Synonyms

Publications