rna187, rna187 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna187
Unique Name	rna187
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1842
Alignment location	CM002455.1:488045..489745 -

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Properties


Property Name	Value
Product	armadillo repeat containing 6
Orig transcript id	gnl\|cribi\|Naga_100013g30.9822.mrna
Orig protein id	gnl\|cribi\|Naga_100013g30.9822
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:488045..489745 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100013g30	gene178	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30534.1	cds187	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna187	rna187-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:488045..489745-
coding sequence from alignment at CM002455.1:488045..489745-

mRNA sequence

>rna187 ID=rna187|Name=rna187|organism=Nannochloropsis gaditana|type=mRNA|length=1842bp
ATGGAGGACGCGCAGCAGGAGGAAAGAGTTTTGCACTGGCTAAAAAAGCG
GGGATACACGGAGGTGGCAAAACACTATGAAGAGGACCAGGCTCACGCAG
CGGTGGGCAGCGCCGAAGAGGGCAACGAGAGCGAGGATTCTTCCGTCCCT
AGCGGTGCATTTACTGATGAGCGCTTGTTGTGCAAGCGAATTGGTGAAGC
GAATCAAAGTGCGTTACTCTTTCGCTCTCTCCGTATGTCAGATCCGATGC
TGTACCATCGAAACTACAACGAGCTACAGACGTGGACTTGCAATGCCCTA
GAGGCCTACAAGCCCGAGCTCTTGACAGTGGCCTTTCCTGTCTTCGTTCA
CAGCTACCTGAAACTTGTAGAGCGGGGTATGATAGAAGCAGCGAGAGCCT
TCCTCCAGACCTGGGGACCTGACCATGCAGAAACATATCAACTAGAATTG
CGGAGTTTGACGGCCGTTCAACGGCCCGATCACCTAACGGCGGGCAACGG
ATTTGTCAAGCGCGCCTTGACAGACAAGTTTGTCCTTCGACTCTGCAGCA
TCAGCTATCGCCTCTTACAAAGTTTCTTGAGCGACCACAATCTGTTGCTA
ATCATGGAGATCTTGAACGAGCAAGTGCACGTGGTGGTTGAGGAGCGCCC
TCCTATGCCTCGCTTCCAGGTGGTGACGGGTGGGCGTGGTCAAATAAGCC
ACGCGTTTACGGTTCGCTGGAGAGCGACGGGGCTGGGCGGGTCCGACGTG
AAAGATGACAGCAGCAGGCCTCCATATAATGCCCCTCTCTTCCAAAAACT
GGAGGCGCTAGCTGCTAAGACGCGACAAGAAATAGCGATGGGGGTGGCAG
ATCCCGGGAATCCGACGGTATTGATGGCCTCCTTGACCAACACTTACGAC
GGGTGCACCGTGGCGCGAATGACGACCGACGCCACTCAACTTGCCGCAGG
CTTCCACGACAGGGCAGTGCGCGTCTTCCGCTTGGCCGGGGAGGGCCCCG
TAGGGATGGAAAATGGGAATGGGAGTAAGCTTCACAGCGACGGGGGGGAG
CAGGCCCCTGAGGGTCCGCTTATCATGAGAGGACACAGCCAACCCGTCCA
CGGCGTCAGCTGGGCACCGGAGCAGCAACATCTCCTCTCGGCCTCCTCGG
ACGGGACGGTGCGGCTGTGGGACGTGGCCGCCTCCCGTAACGTGTGTGTG
TACAGGTCCCCGACCGACGTGCCGGTCTGGGACGTGAGCTTCGCGCCCGT
CGGGCACTACTTCGCCTCCGGGTCCTACGACCGGGTCGGCCGCGTGTGGT
GCACAAACAGGACGCAACCGGTGCGGCTGCTGGTCGGTCACTACTCGGAC
GTGTCTTGCGTCGCTTGGCATCCGAACTGCAGCTATCTCGTCACCGGATC
GTGGGATAAGACGGTGCGGCTGTGGGACCTCGGGAGTGGTCGGTGTTTTC
GGCTATATTCGGGACACTTTGGGCCGGTTACGGCCTTAACTGTCAGTCCA
GATGGTCAGTTTCTTGCAGGCGCGGGACTGGGAGGTGGCCAAGGGAACGA
GGACGGGGTCATTCGGATCTGGCAGGTGGCATCAGGGCGGGAGGTGGCTG
TTCTGAGAGGACACGAGGGTCCCGTACATCGCTTGAATTACAGCGCAGAC
GGGACAGTGCTAGCGAGTGGAGGCGCTGACATGACGGTGCGGACATGGGA
CATGAACGGAGACTTCGCCTCTCTGATGTCATCTGTATCTCTTGCCCCGC
ATTCCACGTTCCACACGAAAGCCACTCCAGTGTTGGACGTGACTTTCACA
AAGCGGAACCTGCTCCTTGCCAGTGGTCCGATCATGTCCTAG

protein sequence of rna187

>rna187-protein ID=rna187-protein|Name=rna187|organism=Nannochloropsis gaditana|type=polypeptide|length=566bp
MQGHRLTIFVSPMRSLHFFSASTSMVSTPEVPKKRISQATFDETVYENMV
DLEMDRADAVKDALQQFTSQGVDLENICVTLNENDGRWLEEVDAQLTALK
NCLDNGTDLSLPPSWSPEATLAALQALHSALTDSDIKRADNARKLLGSKD
AVNVIARIWQEWGDEPSCVTLDPAEAEAIAKARLLAVAVTEAACGGGSAG
DQSKHAFRPTSMRMLCQAARRAQLREQRSFLIASLSLVRVLSTRAEDHKV
SFVEHGGLDTLVECLEKEAWASDCEIVREACGAIKAVTAVDDFRKDFSAS
HTHTRALTAKGCIPVLLQACRRFGADSDTVATGLDALRNLANNEESVNQI
ASEGGVVGTVRALQAHLSHPALARAATGLFRNVSADDRHKTRLCKNGAAQ
LMLEAMREHAQERKIQEHGLATLGAMALRSPDNCRHLFGMGAVSVILEAL
ERHPEARAIQRQGCLAVRNMVSRVPELGEAFLEAGAEPLLRLAGRYQESV
DEAYAALRDLKCDVKRVIVDPLTGEIKAPEEFGSAKTSFRPLFDSSNDIE
GAVQAAINAPSNSYRF

mRNA from alignment at CM002455.1:488045..489745-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna187 ID=rna187|Name=rna187|organism=Nannochloropsis gaditana|type=mRNA|length=1701bp|location=Sequence derived from alignment at CM002455.1:488045..489745- (Nannochloropsis gaditana)
ATGCAAGGTCATCGTCTCACAATTTTTGTTTCGCCGATGCGCTCCTTACA
TTTTTTTTCAGCGTCGACGTCAATGGTCTCAACCCCTGAAGTCCCAAAAA
AGAGAATATCACAAGCAACATTCGATGAGACAGTGTACGAGAATATGGTT
GACCTCGAAATGGATAGGGCGGATGCCGTCAAGGATGCTTTACAGCAGTT
CACAAGCCAAGGCGTTGACTTGGAGAACATTTGTGTGACACTGAACGAAA
ATGACGGGCGCTGGCTCGAAGAGGTGGACGCACAGCTGACTGCGCTAAAG
AACTGCTTGGATAATGGGACGGATCTCAGCCTACCTCCTTCCTGGAGTCC
TGAGGCCACGCTGGCGGCTCTTCAGGCTCTGCATTCGGCATTGACGGATA
GCGATATTAAGAGAGCAGACAACGCTCGTAAATTGCTTGGGTCAAAAGAT
GCGGTGAATGTAATTGCGCGAATATGGCAAGAATGGGGAGATGAACCTTC
CTGTGTAACCCTGGATCCTGCGGAAGCTGAGGCGATAGCCAAAGCCAGGT
TATTGGCCGTGGCTGTGACCGAGGCTGCGTGCGGCGGGGGTAGTGCAGGA
GACCAGAGCAAGCACGCTTTCCGGCCAACCAGCATGCGCATGCTTTGTCA
AGCCGCTCGGCGAGCACAACTGAGGGAGCAACGCTCCTTTCTCATTGCTT
CTTTATCTCTGGTGCGTGTCTTGTCAACGCGTGCGGAGGATCATAAAGTG
AGCTTCGTTGAGCATGGCGGCTTGGACACACTGGTGGAATGCCTGGAAAA
AGAGGCATGGGCCTCCGACTGCGAAATTGTTCGTGAGGCTTGTGGTGCAA
TCAAGGCTGTCACGGCAGTGGACGATTTTCGGAAAGACTTCAGCGCCTCC
CACACTCATACACGGGCCCTCACGGCCAAAGGCTGCATCCCAGTCCTCCT
GCAAGCTTGCCGTCGATTCGGCGCAGACTCGGACACGGTCGCCACTGGAC
TTGATGCCCTCCGGAATCTGGCCAACAACGAGGAGAGCGTGAACCAGATT
GCCTCCGAGGGGGGAGTGGTTGGGACCGTGCGCGCGCTCCAAGCTCACCT
CTCCCACCCGGCCCTAGCACGGGCGGCCACTGGGCTCTTCCGCAATGTCT
CCGCAGATGACCGGCACAAAACACGTCTGTGTAAGAATGGCGCCGCTCAG
CTGATGCTAGAGGCGATGCGAGAGCACGCACAGGAAAGAAAAATCCAGGA
GCACGGGCTCGCCACACTAGGAGCCATGGCTTTGCGGAGTCCGGACAACT
GCCGCCACCTATTTGGAATGGGCGCCGTGTCGGTAATCTTGGAGGCCCTG
GAACGGCATCCAGAGGCCCGTGCAATACAGCGTCAAGGCTGTTTGGCTGT
GCGGAACATGGTCAGCCGTGTCCCTGAGCTAGGGGAGGCTTTCCTCGAGG
CGGGCGCAGAGCCCTTATTGCGGTTAGCGGGACGATACCAGGAAAGCGTC
GATGAAGCGTACGCTGCTTTGCGAGACCTGAAGTGTGACGTGAAACGTGT
GATCGTGGATCCCTTGACGGGCGAAATCAAGGCTCCAGAAGAGTTCGGCA
GCGCCAAAACTTCCTTCCGGCCACTTTTTGATAGCAGCAACGACATCGAA
GGGGCGGTGCAAGCCGCAATCAATGCCCCTAGTAATTCCTATCGTTTTTA
A

Coding sequence (CDS) from alignment at CM002455.1:488045..489745-

>rna187 ID=rna187|Name=rna187|organism=Nannochloropsis gaditana|type=CDS|length=1701bp|location=Sequence derived from alignment at CM002455.1:488045..489745- (Nannochloropsis gaditana)
ATGCAAGGTCATCGTCTCACAATTTTTGTTTCGCCGATGCGCTCCTTACA
TTTTTTTTCAGCGTCGACGTCAATGGTCTCAACCCCTGAAGTCCCAAAAA
AGAGAATATCACAAGCAACATTCGATGAGACAGTGTACGAGAATATGGTT
GACCTCGAAATGGATAGGGCGGATGCCGTCAAGGATGCTTTACAGCAGTT
CACAAGCCAAGGCGTTGACTTGGAGAACATTTGTGTGACACTGAACGAAA
ATGACGGGCGCTGGCTCGAAGAGGTGGACGCACAGCTGACTGCGCTAAAG
AACTGCTTGGATAATGGGACGGATCTCAGCCTACCTCCTTCCTGGAGTCC
TGAGGCCACGCTGGCGGCTCTTCAGGCTCTGCATTCGGCATTGACGGATA
GCGATATTAAGAGAGCAGACAACGCTCGTAAATTGCTTGGGTCAAAAGAT
GCGGTGAATGTAATTGCGCGAATATGGCAAGAATGGGGAGATGAACCTTC
CTGTGTAACCCTGGATCCTGCGGAAGCTGAGGCGATAGCCAAAGCCAGGT
TATTGGCCGTGGCTGTGACCGAGGCTGCGTGCGGCGGGGGTAGTGCAGGA
GACCAGAGCAAGCACGCTTTCCGGCCAACCAGCATGCGCATGCTTTGTCA
AGCCGCTCGGCGAGCACAACTGAGGGAGCAACGCTCCTTTCTCATTGCTT
CTTTATCTCTGGTGCGTGTCTTGTCAACGCGTGCGGAGGATCATAAAGTG
AGCTTCGTTGAGCATGGCGGCTTGGACACACTGGTGGAATGCCTGGAAAA
AGAGGCATGGGCCTCCGACTGCGAAATTGTTCGTGAGGCTTGTGGTGCAA
TCAAGGCTGTCACGGCAGTGGACGATTTTCGGAAAGACTTCAGCGCCTCC
CACACTCATACACGGGCCCTCACGGCCAAAGGCTGCATCCCAGTCCTCCT
GCAAGCTTGCCGTCGATTCGGCGCAGACTCGGACACGGTCGCCACTGGAC
TTGATGCCCTCCGGAATCTGGCCAACAACGAGGAGAGCGTGAACCAGATT
GCCTCCGAGGGGGGAGTGGTTGGGACCGTGCGCGCGCTCCAAGCTCACCT
CTCCCACCCGGCCCTAGCACGGGCGGCCACTGGGCTCTTCCGCAATGTCT
CCGCAGATGACCGGCACAAAACACGTCTGTGTAAGAATGGCGCCGCTCAG
CTGATGCTAGAGGCGATGCGAGAGCACGCACAGGAAAGAAAAATCCAGGA
GCACGGGCTCGCCACACTAGGAGCCATGGCTTTGCGGAGTCCGGACAACT
GCCGCCACCTATTTGGAATGGGCGCCGTGTCGGTAATCTTGGAGGCCCTG
GAACGGCATCCAGAGGCCCGTGCAATACAGCGTCAAGGCTGTTTGGCTGT
GCGGAACATGGTCAGCCGTGTCCCTGAGCTAGGGGAGGCTTTCCTCGAGG
CGGGCGCAGAGCCCTTATTGCGGTTAGCGGGACGATACCAGGAAAGCGTC
GATGAAGCGTACGCTGCTTTGCGAGACCTGAAGTGTGACGTGAAACGTGT
GATCGTGGATCCCTTGACGGGCGAAATCAAGGCTCCAGAAGAGTTCGGCA
GCGCCAAAACTTCCTTCCGGCCACTTTTTGATAGCAGCAACGACATCGAA
GGGGCGGTGCAAGCCGCAATCAATGCCCCTAGTAATTCCTATCGTTTTTA
A

Synonyms

Publications