EWM30539.1, cds153 (CDS) Nannochloropsis gaditana

Overview
NameEWM30539.1
Unique Namecds153
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:394130..395859 +
Alignment locationCM002455.1:395983..397150 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30539.1
Productatp-dependent rna helicase ythdc2-like protein
Orig transcript idgnl|cribi|Naga_100013g69.9827.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:394130..395859 +
CM002455.1supercontigCM002455.1:395983..397150 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
BLAST of EWM30539.1 vs. NCBI_GenBank
Match: gi|585113203|gb|EWM30539.1| (atp-dependent rna helicase ythdc2-like protein [Nannochloropsis gaditana])

HSP 1 Score: 1976.44 bits (5119), Expect = 0.000e+0
Identity = 965/965 (100.00%), Postives = 965/965 (100.00%), Query Frame = 0
Query:    1 MSREYFAGGREDLRGKRHLSLRRHRDASTDWLGSYHRPHIPFEDRHHPHALPPTLSHALPAEGHGREPRRGGFPVSYSPPRMPRQHDPPPLLSLEECDGPSDHSFPSTAMPLEDLDEGRGWRRPRVPSGLHSHAIPPPPAHAFASPWPSRSFPPAQSHSRFGGLERGESSRQHEQWGVEDQLRRDWERDRWERGWDREGSRFFVNVPERVRRSEREAETSFNPFPEQTSKELGKSFSHHAKGGLVQTGAVGRGRIRQGEHGYLVTLSLPEKDLGKPTFSPSSSSSSLSSLRDSGGNTSLAPPAGDEVGGSLIQGEGDSVNGSLGRKRGRSDQNCGFSVKKAKGSGQIPAGKARDGISVSIKKDEQLELAVTIVRATFCAHISSLHGHCSADPAFLPCPFQSVGDLPPPTDPLGEVFGVKARSTLSECGFRAMLQGVGDALLRIIPRKGQAGEPVEIMVSKDLLIELRNYFYLKSSNAKKRKPTLKQEIIQRTAKAVCVGASALGKEKERGYAEMLLSIPWDVVAYCKKSILHRLTALVKRVSEEEESVPRGLLSSALQRLSRPSSALWYDSSQKILSLMEQLDRLQIPPVLPDSALVSCRAHTENHQIEQSPNLTAMALSKDTGTSVETDRRRMLKPMNDVFDKTSPTLACDDDDNACVIYSPERNLEEDTDELGSPVVSPPLSPSSRGIQQTAAIGRQGKRKDSYEKGPSAFSLAPVAACNTVSGFPAPTALPASSLASSVPRDPRKLAREKIAHRTTAVKKVDFLLPNEEDSGDHGKRTTYMRSHVLEAIRATSRQTSYSKSCQHCQSQLSTLRCGKCGRCEHCSSIIFCKGAERRSRLTEIGHVNRLSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSRPAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELLAMHPVAVPAQRDGVRLGHARQR 965
            MSREYFAGGREDLRGKRHLSLRRHRDASTDWLGSYHRPHIPFEDRHHPHALPPTLSHALPAEGHGREPRRGGFPVSYSPPRMPRQHDPPPLLSLEECDGPSDHSFPSTAMPLEDLDEGRGWRRPRVPSGLHSHAIPPPPAHAFASPWPSRSFPPAQSHSRFGGLERGESSRQHEQWGVEDQLRRDWERDRWERGWDREGSRFFVNVPERVRRSEREAETSFNPFPEQTSKELGKSFSHHAKGGLVQTGAVGRGRIRQGEHGYLVTLSLPEKDLGKPTFSPSSSSSSLSSLRDSGGNTSLAPPAGDEVGGSLIQGEGDSVNGSLGRKRGRSDQNCGFSVKKAKGSGQIPAGKARDGISVSIKKDEQLELAVTIVRATFCAHISSLHGHCSADPAFLPCPFQSVGDLPPPTDPLGEVFGVKARSTLSECGFRAMLQGVGDALLRIIPRKGQAGEPVEIMVSKDLLIELRNYFYLKSSNAKKRKPTLKQEIIQRTAKAVCVGASALGKEKERGYAEMLLSIPWDVVAYCKKSILHRLTALVKRVSEEEESVPRGLLSSALQRLSRPSSALWYDSSQKILSLMEQLDRLQIPPVLPDSALVSCRAHTENHQIEQSPNLTAMALSKDTGTSVETDRRRMLKPMNDVFDKTSPTLACDDDDNACVIYSPERNLEEDTDELGSPVVSPPLSPSSRGIQQTAAIGRQGKRKDSYEKGPSAFSLAPVAACNTVSGFPAPTALPASSLASSVPRDPRKLAREKIAHRTTAVKKVDFLLPNEEDSGDHGKRTTYMRSHVLEAIRATSRQTSYSKSCQHCQSQLSTLRCGKCGRCEHCSSIIFCKGAERRSRLTEIGHVNRLSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSRPAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELLAMHPVAVPAQRDGVRLGHARQR
Sbjct:    1 MSREYFAGGREDLRGKRHLSLRRHRDASTDWLGSYHRPHIPFEDRHHPHALPPTLSHALPAEGHGREPRRGGFPVSYSPPRMPRQHDPPPLLSLEECDGPSDHSFPSTAMPLEDLDEGRGWRRPRVPSGLHSHAIPPPPAHAFASPWPSRSFPPAQSHSRFGGLERGESSRQHEQWGVEDQLRRDWERDRWERGWDREGSRFFVNVPERVRRSEREAETSFNPFPEQTSKELGKSFSHHAKGGLVQTGAVGRGRIRQGEHGYLVTLSLPEKDLGKPTFSPSSSSSSLSSLRDSGGNTSLAPPAGDEVGGSLIQGEGDSVNGSLGRKRGRSDQNCGFSVKKAKGSGQIPAGKARDGISVSIKKDEQLELAVTIVRATFCAHISSLHGHCSADPAFLPCPFQSVGDLPPPTDPLGEVFGVKARSTLSECGFRAMLQGVGDALLRIIPRKGQAGEPVEIMVSKDLLIELRNYFYLKSSNAKKRKPTLKQEIIQRTAKAVCVGASALGKEKERGYAEMLLSIPWDVVAYCKKSILHRLTALVKRVSEEEESVPRGLLSSALQRLSRPSSALWYDSSQKILSLMEQLDRLQIPPVLPDSALVSCRAHTENHQIEQSPNLTAMALSKDTGTSVETDRRRMLKPMNDVFDKTSPTLACDDDDNACVIYSPERNLEEDTDELGSPVVSPPLSPSSRGIQQTAAIGRQGKRKDSYEKGPSAFSLAPVAACNTVSGFPAPTALPASSLASSVPRDPRKLAREKIAHRTTAVKKVDFLLPNEEDSGDHGKRTTYMRSHVLEAIRATSRQTSYSKSCQHCQSQLSTLRCGKCGRCEHCSSIIFCKGAERRSRLTEIGHVNRLSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSRPAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELLAMHPVAVPAQRDGVRLGHARQR 965          
BLAST of EWM30539.1 vs. NCBI_GenBank
Match: gi|553191939|ref|XP_005855487.1| (yth domain containing 2 [Nannochloropsis gaditana CCMP526] >gi|553193903|ref|XP_005855857.1| yth domain containing 2 [Nannochloropsis gaditana CCMP526] >gi|422293206|gb|EKU20506.1| yth domain containing 2 [Nannochloropsis gaditana CCMP526] >gi|422293574|gb|EKU20874.1| yth domain containing 2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 259.61 bits (662), Expect = 4.214e-78
Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 0
Query:  841 LTEIGHVNRLSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSRPAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELLAMHPVAVPAQRDGVRLGHARQR 965
            +TEIGHVNRLSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSRPAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELLAMHPVAVPAQRDGVRLGHARQR
Sbjct:    1 MTEIGHVNRLSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSRPAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELLAMHPVAVPAQRDGVRLGHARQR 125          
BLAST of EWM30539.1 vs. NCBI_GenBank
Match: gi|635370407|emb|CCI41457.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 87.8113 bits (216), Expect = 1.559e-14
Identity = 55/151 (36.42%), Postives = 81/151 (53.64%), Query Frame = 0
Query:  805 CQHCQSQLSTLRCGKCGRCEHCSSIIFCKGAERRSRLTEIGHVNR-----------LSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSR-PAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELL 943
            CQ C+ +++  RC +CG C  CS    C  A     ++EI   +            L   MD+AI+ AFK  ++ F  + +L+Q+  + VNF R  +   TALMA A HG+   V++LLSLGA+PCL   +GH A  FA++  +K    LL
Sbjct:  268 CQLCR-RMNAKRCMRCGYCTKCSQRELCPNAS----MSEISQPSENLSVKDRNQQVLGSAMDQAIYRAFK--QEDFHSVFSLIQN-DMDVNFQRMESDHSTALMAGAHHGREDAVRKLLSLGANPCLTDKNGHEAWVFADRKGYKSLTALL 410          
BLAST of EWM30539.1 vs. NCBI_GenBank
Match: gi|635370405|emb|CCI41455.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 87.8113 bits (216), Expect = 2.602e-14
Identity = 55/151 (36.42%), Postives = 81/151 (53.64%), Query Frame = 0
Query:  805 CQHCQSQLSTLRCGKCGRCEHCSSIIFCKGAERRSRLTEIG-----------HVNRLSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSR-PAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELL 943
            CQ C+ +++  RC +CG C  CS    C  A     ++EI            +   L   MD+AI+ AFK  ++ F  + +L+Q+  + VNF R  +   TALMA A HG+   V++LLSLGA+PCL   +GH A  FA++  +K    LL
Sbjct:  319 CQLCR-RMNAKRCMRCGYCTKCSQRELCPNAS----MSEISQPSENLSVKDRNQQVLGSAMDQAIYRAFK--QEDFHSVFSLIQN-DMDVNFQRMESDHSTALMAGAHHGREDAVRKLLSLGANPCLTDKNGHEAWVFADRKGYKSLTALL 461          
BLAST of EWM30539.1 vs. NCBI_GenBank
Match: gi|635370406|emb|CCI41456.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 87.4261 bits (215), Expect = 2.808e-14
Identity = 55/151 (36.42%), Postives = 81/151 (53.64%), Query Frame = 0
Query:  805 CQHCQSQLSTLRCGKCGRCEHCSSIIFCKGAERRSRLTEIG-----------HVNRLSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSR-PAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELL 943
            CQ C+ +++  RC +CG C  CS    C  A     ++EI            +   L   MD+AI+ AFK  ++ F  + +L+Q+  + VNF R  +   TALMA A HG+   V++LLSLGA+PCL   +GH A  FA++  +K    LL
Sbjct:  308 CQLCR-RMNAKRCMRCGYCTKCSQRELCPNAS----MSEISQPSENLSVKDRNQQVLGSAMDQAIYRAFK--QEDFHSVFSLIQN-DMDVNFQRMESDHSTALMAGAHHGREDAVRKLLSLGANPCLTDKNGHEAWVFADRKGYKSLTALL 450          
BLAST of EWM30539.1 vs. NCBI_GenBank
Match: gi|325188248|emb|CCA22787.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 86.2705 bits (212), Expect = 7.326e-14
Identity = 55/147 (37.41%), Postives = 80/147 (54.42%), Query Frame = 0
Query:  805 CQHCQSQLSTLRCGKCGRCEHCSSIIFCKGAERR-----SRLTEIGHVNR--LSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSR-PAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELL 943
            CQ C+ +++  RC +CG C  CS    C  A        S    +   N+  L   MD+AI+ AFK  ++ F  + +L+Q+  + VNF R  +   TALMAAA HG+    ++LLSLGA+PCL   +GH A  FA++  +K    LL
Sbjct:  317 CQLCR-RMNAKRCMRCGYCTKCSQRELCPNANNSEISQPSENLSVKDRNQQVLGSAMDQAIYRAFK--QEDFHSVFSLIQN-DMDVNFQRIESDHSTALMAAAHHGREDAAQKLLSLGANPCLTDKNGHEAWVFADRKGYKSLTALL 459          
BLAST of EWM30539.1 vs. NCBI_GenBank
Match: gi|970650166|gb|KUF89262.1| (Monoterpene epsilon-lactone hydrolase [Phytophthora nicotianae])

HSP 1 Score: 76.6406 bits (187), Expect = 7.161e-11
Identity = 55/160 (34.38%), Postives = 80/160 (50.00%), Query Frame = 0
Query:  802 SKSCQHCQSQLSTLRCGKCGRCEHCSSIIFCKGAER--------RSRLTEIG---------HVNRLSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSR-PAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELL 943
            SK C HC+       C KCG+ + C  I     A+         ++  T +G         +V  L   MD AI+ AF+  ++ F  + +L+Q+ G+ VNF R  +   +ALMAAA HG+     +LLSLGA+PCL+   G+ A  FA +  H E  E L
Sbjct:  261 SKRCTHCE------YCAKCGQKDKCEPISVTPAAQSFSGDGNGTKTAGTSMGAKSLSVKDRNVQVLGSVMDAAIYHAFR--QEDFHSVFSLIQN-GMDVNFQRVESDHSSALMAAAHHGRDDAASKLLSLGANPCLEDHTGNKAWNFAERRGHTELMEKL 411          
BLAST of EWM30539.1 vs. NCBI_GenBank
Match: gi|568034537|gb|ETM32206.1| (hypothetical protein L914_20350 [Phytophthora parasitica])

HSP 1 Score: 76.6406 bits (187), Expect = 9.764e-11
Identity = 55/160 (34.38%), Postives = 80/160 (50.00%), Query Frame = 0
Query:  802 SKSCQHCQSQLSTLRCGKCGRCEHCSSIIFCKGAE--------RRSRLTEIG---------HVNRLSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSR-PAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELL 943
            SK C HC+       C KCG+ + C  I     A+         ++  T +G         +V  L   MD AI+ AF+  ++ F  + +L+Q+ G+ VNF R  +   +ALMAAA HG+     +LLSLGA+PCL+   G+ A  FA +  H E  E L
Sbjct:  336 SKRCTHCE------YCAKCGQKDKCEPISVTPAAQSFSGDGNGTKTAGTSMGAKSLSVKDRNVQVLGSVMDAAIYHAFR--QEDFHSVFSLIQN-GMDVNFQRVESDHSSALMAAAHHGRDDAASKLLSLGANPCLEDHTGNKAWNFAERRGHTELMEKL 486          
BLAST of EWM30539.1 vs. NCBI_GenBank
Match: gi|567975162|gb|ETL25729.1| (hypothetical protein L916_20468 [Phytophthora parasitica] >gi|970646545|gb|KUF86663.1| hypothetical protein AM587_10004311 [Phytophthora nicotianae])

HSP 1 Score: 76.6406 bits (187), Expect = 9.764e-11
Identity = 55/160 (34.38%), Postives = 80/160 (50.00%), Query Frame = 0
Query:  802 SKSCQHCQSQLSTLRCGKCGRCEHCSSIIFCKGAE--------RRSRLTEIG---------HVNRLSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSR-PAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELL 943
            SK C HC+       C KCG+ + C  I     A+         ++  T +G         +V  L   MD AI+ AF+  ++ F  + +L+Q+ G+ VNF R  +   +ALMAAA HG+     +LLSLGA+PCL+   G+ A  FA +  H E  E L
Sbjct:  336 SKRCTHCE------YCAKCGQKDKCEPISVTPAAQSFSGDGNGTKTAGTSMGAKSLSVKDRNVQVLGSVMDAAIYHAFR--QEDFHSVFSLIQN-GMDVNFQRVESDHSSALMAAAHHGRDDAASKLLSLGANPCLEDHTGNKAWNFAERRGHTELMEKL 486          
BLAST of EWM30539.1 vs. NCBI_GenBank
Match: gi|570312679|gb|ETO60627.1| (hypothetical protein F444_21211 [Phytophthora parasitica P1976])

HSP 1 Score: 76.6406 bits (187), Expect = 1.011e-10
Identity = 55/160 (34.38%), Postives = 80/160 (50.00%), Query Frame = 0
Query:  802 SKSCQHCQSQLSTLRCGKCGRCEHCSSIIFCKGAE--------RRSRLTEIG---------HVNRLSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSR-PAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELL 943
            SK C HC+       C KCG+ + C  I     A+         ++  T +G         +V  L   MD AI+ AF+  ++ F  + +L+Q+ G+ VNF R  +   +ALMAAA HG+     +LLSLGA+PCL+   G+ A  FA +  H E  E L
Sbjct:  336 SKRCTHCE------YCAKCGQKDKCEPISVTPAAQSFSGDGNGTKTAGTSMGAKSLSVKDRNVQVLGSVMDAAIYHAFR--QEDFHSVFSLIQN-GMDVNFQRVESDHSSALMAAAHHGRDDAASKLLSLGANPCLEDHTGNKAWNFAERRGHTELMEKL 486          
The following BLAST results are available for this feature:
BLAST of EWM30539.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113203|gb|EWM30539.1|0.000e+0100.00atp-dependent rna helicase ythdc2-like protein [Na... [more]
gi|553191939|ref|XP_005855487.1|4.214e-7899.20yth domain containing 2 [Nannochloropsis gaditana ... [more]
gi|635370407|emb|CCI41457.1|1.559e-1436.42unnamed protein product [Albugo candida][more]
gi|635370405|emb|CCI41455.1|2.602e-1436.42unnamed protein product [Albugo candida][more]
gi|635370406|emb|CCI41456.1|2.808e-1436.42unnamed protein product [Albugo candida][more]
gi|325188248|emb|CCA22787.1|7.326e-1437.41conserved hypothetical protein [Albugo laibachii N... [more]
gi|970650166|gb|KUF89262.1|7.161e-1134.38Monoterpene epsilon-lactone hydrolase [Phytophthor... [more]
gi|568034537|gb|ETM32206.1|9.764e-1134.38hypothetical protein L914_20350 [Phytophthora para... [more]
gi|567975162|gb|ETL25729.1|9.764e-1134.38hypothetical protein L916_20468 [Phytophthora para... [more]
gi|570312679|gb|ETO60627.1|1.011e-1034.38hypothetical protein F444_21211 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna153rna153Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications