EWM30613.1, cds65 (CDS) Nannochloropsis gaditana

Overview
NameEWM30613.1
Unique Namecds65
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:183901..183941 -
Alignment locationCM002455.1:183615..183736 -
Alignment locationCM002455.1:182971..183518 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30613.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100129g9.1891.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:183901..183941 -
CM002455.1supercontigCM002455.1:183615..183736 -
CM002455.1supercontigCM002455.1:182971..183518 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM30613.1 vs. NCBI_GenBank
Match: gi|585113285|gb|EWM30613.1| (hypothetical protein Naga_100129g9 [Nannochloropsis gaditana])

HSP 1 Score: 487.263 bits (1253), Expect = 3.555e-174
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
Query:    1 MSGTTAFPERYTWWDKRVKRPRMQGVAALPAWRRPRMPLSLGVFWLLGVTVASSDGKCRSCAGFAPVQMGGHTRRLSHTPSPLSLSKTSTPLGVITATKVKAKCSNVRTYIDVSTRGEFVTHTTASLLVGALSLVTITPPRMVQAAESSTDNPSTETNPVAPRRWISGKSEKPRGSKDRTGTKRDSNYLRCLSDCTTECRKPGQGPSKDNAECLEACQDYCCKTYEQCTYTQNYEG 236
            MSGTTAFPERYTWWDKRVKRPRMQGVAALPAWRRPRMPLSLGVFWLLGVTVASSDGKCRSCAGFAPVQMGGHTRRLSHTPSPLSLSKTSTPLGVITATKVKAKCSNVRTYIDVSTRGEFVTHTTASLLVGALSLVTITPPRMVQAAESSTDNPSTETNPVAPRRWISGKSEKPRGSKDRTGTKRDSNYLRCLSDCTTECRKPGQGPSKDNAECLEACQDYCCKTYEQCTYTQNYEG
Sbjct:    1 MSGTTAFPERYTWWDKRVKRPRMQGVAALPAWRRPRMPLSLGVFWLLGVTVASSDGKCRSCAGFAPVQMGGHTRRLSHTPSPLSLSKTSTPLGVITATKVKAKCSNVRTYIDVSTRGEFVTHTTASLLVGALSLVTITPPRMVQAAESSTDNPSTETNPVAPRRWISGKSEKPRGSKDRTGTKRDSNYLRCLSDCTTECRKPGQGPSKDNAECLEACQDYCCKTYEQCTYTQNYEG 236          
BLAST of EWM30613.1 vs. NCBI_GenBank
Match: gi|299471644|emb|CBN76866.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 105.145 bits (261), Expect = 2.121e-24
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 0
Query:  140 PRMVQAAESSTDNPSTETNPVAPRRWISGKSEKPRGSKDRTGTKRDSNYLRCLSDCTTECRKPGQGPSKDNAECLEACQDYCCKTYEQCTYT 231
            P   +AA+ S D    E        WISGK  +P+GS D+TGT+++S YLRCLS+C  +C+KP  GP +D  ECL+ACQD CC +YEQCTYT
Sbjct:  106 PEEARAAKGSADATQKE--------WISGKGAQPKGSDDKTGTRKESKYLRCLSNCLADCQKPTYGPERDREECLQACQDECCMSYEQCTYT 189          
BLAST of EWM30613.1 vs. NCBI_GenBank
Match: gi|873240276|emb|CEL93616.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 83.9593 bits (206), Expect = 8.535e-17
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 0
Query:  163 RRWISGKSEKPRGS-KDRTGTKRDSNYLRCLSDCTTECRKPGQ-GPSKDNAECLEACQDYCCKTYEQCTYT 231
            R WISGKS +P+   K R GTKRD  +L+CLS C +EC+KPG  G SK   ECLE C+D CC TYEQC+Y 
Sbjct:   82 RLWISGKSTEPKKDPKAREGTKRDPKFLKCLSQCLSECKKPGSYGYSKSEDECLEDCRDECCFTYEQCSYA 152          
BLAST of EWM30613.1 vs. NCBI_GenBank
Match: gi|551584226|ref|XP_005777511.1| (hypothetical protein EMIHUDRAFT_206169 [Emiliania huxleyi CCMP1516] >gi|485629781|gb|EOD25082.1| hypothetical protein EMIHUDRAFT_206169 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 72.0182 bits (175), Expect = 3.296e-12
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 0
Query:  161 APRRWISGKSEKPR-GSKDR-TGTKRDSNYLRCLSDCTTECRKPGQGPSKDNAECLEACQDYCCKTYEQCT 229
            AP+ W+SGKS+  R  SKD+  GTK+D  YL CL+DC   C+K     SKD ++C + CQD CC TY+QCT
Sbjct:   52 APKLWLSGKSDPLRPTSKDKLDGTKKDPKYLSCLNDCVPRCQKDA---SKDRSDCFDECQDECCFTYQQCT 119          
BLAST of EWM30613.1 vs. NCBI_GenBank
Match: gi|397564789|gb|EJK44346.1| (hypothetical protein THAOC_37126 [Thalassiosira oceanica])

HSP 1 Score: 72.0182 bits (175), Expect = 4.096e-12
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 0
Query:  165 WISGKS-----EKPRGSKDRTGTKRDSNYLRCLSDCTTECRK-PG-QGPSKDNAECLEACQDYCCKTYEQCTY 230
            W +GKS     +KPR   D  GT++D ++LR +SDC ++C   PG +G +K   ECL  CQD CC TYEQCT+
Sbjct:   93 WKTGKSPIVPGQKPRDKSDVKGTRKDPSFLRSISDCKSKCENTPGPEGLAKSKEECLAECQDICCTTYEQCTF 165          
BLAST of EWM30613.1 vs. NCBI_GenBank
Match: gi|551544566|ref|XP_005760325.1| (hypothetical protein EMIHUDRAFT_217875 [Emiliania huxleyi CCMP1516] >gi|485608746|gb|EOD07896.1| hypothetical protein EMIHUDRAFT_217875 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 69.3218 bits (168), Expect = 1.472e-11
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 0
Query:  161 APRRWISGKSEKPR-GSKDR-TGTKRDSNYLRCLSDCTTECRKPGQGPSKDNAECLEACQDYCCKTYEQCT 229
            AP  W+SGKS+  R  SKD+  GTK+D  YL CL+DC   C+K     SKD ++C + CQD CC TY+QCT
Sbjct:   52 APMLWLSGKSDPLRPTSKDKLDGTKKDPKYLSCLNDCVPRCQKDA---SKDRSDCFDECQDECCFTYQQCT 119          
BLAST of EWM30613.1 vs. NCBI_GenBank
Match: gi|922857869|gb|KOO26065.1| (expressed unknown protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 71.2478 bits (173), Expect = 6.250e-11
Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 0
Query:  126 SLLVGALSLVTITPPRMVQAAESSTDNPSTETNPVAPRRWISGKSEKPR-GSKDR-TGTKRDSNYLRCLSDCTTECRKPGQGPSKDNAECLEACQDYCCKTYEQCTYT 231
            ++++  +     T P ++     + D P+         +WISGKS+  R  SKD+  GTK+D+ Y+ CL+DC    + P     K+  +CL+ CQ  CC+TYEQCTYT
Sbjct:  211 NVILNVVRHAFATSPLLMPLVAHADDKPAP--------KWISGKSDPLRPTSKDKPDGTKKDNRYVSCLNDCVPRKQGPPGPNQKERVDCLDECQVECCETYEQCTYT 310          
BLAST of EWM30613.1 vs. NCBI_GenBank
Match: gi|1072225397|gb|OEU10144.1| (hypothetical protein FRACYDRAFT_271216 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 66.6254 bits (161), Expect = 4.936e-10
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0
Query:  164 RWISGKS-------EKPRGSKDRTGTKRDSNYLRCLSDCTTECR-KPG-QGPSKDNAECLEACQDYCCKTYEQCTYT 231
            ++ISGK+        K +   D  GT++D N+LR +SDC T+C+  PG  G S+   +CL  CQD CC TYEQC++ 
Sbjct:   89 KYISGKTPQIPGTEAKKKSDGDTKGTRKDPNFLRSISDCKTQCQIAPGTDGYSRSKMDCLSECQDICCTTYEQCSFN 165          
The following BLAST results are available for this feature:
BLAST of EWM30613.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|585113285|gb|EWM30613.1|3.555e-174100.00hypothetical protein Naga_100129g9 [Nannochloropsi... [more]
gi|299471644|emb|CBN76866.1|2.121e-2452.17expressed unknown protein [Ectocarpus siliculosus][more]
gi|873240276|emb|CEL93616.1|8.535e-1759.15unnamed protein product [Vitrella brassicaformis C... [more]
gi|551584226|ref|XP_005777511.1|3.296e-1252.11hypothetical protein EMIHUDRAFT_206169 [Emiliania ... [more]
gi|397564789|gb|EJK44346.1|4.096e-1247.95hypothetical protein THAOC_37126 [Thalassiosira oc... [more]
gi|551544566|ref|XP_005760325.1|1.472e-1152.11hypothetical protein EMIHUDRAFT_217875 [Emiliania ... [more]
gi|922857869|gb|KOO26065.1|6.250e-1136.11expressed unknown protein [Chrysochromulina sp. CC... [more]
gi|1072225397|gb|OEU10144.1|4.936e-1042.86hypothetical protein FRACYDRAFT_271216 [Fragilario... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna65rna65Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications