EWM30613.1, cds65 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM30613.1 vs. NCBI_GenBank
Match: gi|585113285|gb|EWM30613.1| (hypothetical protein Naga_100129g9 [Nannochloropsis gaditana]) HSP 1 Score: 487.263 bits (1253), Expect = 3.555e-174 Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
Query: 1 MSGTTAFPERYTWWDKRVKRPRMQGVAALPAWRRPRMPLSLGVFWLLGVTVASSDGKCRSCAGFAPVQMGGHTRRLSHTPSPLSLSKTSTPLGVITATKVKAKCSNVRTYIDVSTRGEFVTHTTASLLVGALSLVTITPPRMVQAAESSTDNPSTETNPVAPRRWISGKSEKPRGSKDRTGTKRDSNYLRCLSDCTTECRKPGQGPSKDNAECLEACQDYCCKTYEQCTYTQNYEG 236
MSGTTAFPERYTWWDKRVKRPRMQGVAALPAWRRPRMPLSLGVFWLLGVTVASSDGKCRSCAGFAPVQMGGHTRRLSHTPSPLSLSKTSTPLGVITATKVKAKCSNVRTYIDVSTRGEFVTHTTASLLVGALSLVTITPPRMVQAAESSTDNPSTETNPVAPRRWISGKSEKPRGSKDRTGTKRDSNYLRCLSDCTTECRKPGQGPSKDNAECLEACQDYCCKTYEQCTYTQNYEG
Sbjct: 1 MSGTTAFPERYTWWDKRVKRPRMQGVAALPAWRRPRMPLSLGVFWLLGVTVASSDGKCRSCAGFAPVQMGGHTRRLSHTPSPLSLSKTSTPLGVITATKVKAKCSNVRTYIDVSTRGEFVTHTTASLLVGALSLVTITPPRMVQAAESSTDNPSTETNPVAPRRWISGKSEKPRGSKDRTGTKRDSNYLRCLSDCTTECRKPGQGPSKDNAECLEACQDYCCKTYEQCTYTQNYEG 236
BLAST of EWM30613.1 vs. NCBI_GenBank
Match: gi|299471644|emb|CBN76866.1| (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 105.145 bits (261), Expect = 2.121e-24 Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 0
Query: 140 PRMVQAAESSTDNPSTETNPVAPRRWISGKSEKPRGSKDRTGTKRDSNYLRCLSDCTTECRKPGQGPSKDNAECLEACQDYCCKTYEQCTYT 231
P +AA+ S D E WISGK +P+GS D+TGT+++S YLRCLS+C +C+KP GP +D ECL+ACQD CC +YEQCTYT
Sbjct: 106 PEEARAAKGSADATQKE--------WISGKGAQPKGSDDKTGTRKESKYLRCLSNCLADCQKPTYGPERDREECLQACQDECCMSYEQCTYT 189
BLAST of EWM30613.1 vs. NCBI_GenBank
Match: gi|873240276|emb|CEL93616.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 83.9593 bits (206), Expect = 8.535e-17 Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 0
Query: 163 RRWISGKSEKPRGS-KDRTGTKRDSNYLRCLSDCTTECRKPGQ-GPSKDNAECLEACQDYCCKTYEQCTYT 231
R WISGKS +P+ K R GTKRD +L+CLS C +EC+KPG G SK ECLE C+D CC TYEQC+Y
Sbjct: 82 RLWISGKSTEPKKDPKAREGTKRDPKFLKCLSQCLSECKKPGSYGYSKSEDECLEDCRDECCFTYEQCSYA 152
BLAST of EWM30613.1 vs. NCBI_GenBank
Match: gi|551584226|ref|XP_005777511.1| (hypothetical protein EMIHUDRAFT_206169 [Emiliania huxleyi CCMP1516] >gi|485629781|gb|EOD25082.1| hypothetical protein EMIHUDRAFT_206169 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 72.0182 bits (175), Expect = 3.296e-12 Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 0
Query: 161 APRRWISGKSEKPR-GSKDR-TGTKRDSNYLRCLSDCTTECRKPGQGPSKDNAECLEACQDYCCKTYEQCT 229
AP+ W+SGKS+ R SKD+ GTK+D YL CL+DC C+K SKD ++C + CQD CC TY+QCT
Sbjct: 52 APKLWLSGKSDPLRPTSKDKLDGTKKDPKYLSCLNDCVPRCQKDA---SKDRSDCFDECQDECCFTYQQCT 119
BLAST of EWM30613.1 vs. NCBI_GenBank
Match: gi|397564789|gb|EJK44346.1| (hypothetical protein THAOC_37126 [Thalassiosira oceanica]) HSP 1 Score: 72.0182 bits (175), Expect = 4.096e-12 Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 0
Query: 165 WISGKS-----EKPRGSKDRTGTKRDSNYLRCLSDCTTECRK-PG-QGPSKDNAECLEACQDYCCKTYEQCTY 230
W +GKS +KPR D GT++D ++LR +SDC ++C PG +G +K ECL CQD CC TYEQCT+
Sbjct: 93 WKTGKSPIVPGQKPRDKSDVKGTRKDPSFLRSISDCKSKCENTPGPEGLAKSKEECLAECQDICCTTYEQCTF 165
BLAST of EWM30613.1 vs. NCBI_GenBank
Match: gi|551544566|ref|XP_005760325.1| (hypothetical protein EMIHUDRAFT_217875 [Emiliania huxleyi CCMP1516] >gi|485608746|gb|EOD07896.1| hypothetical protein EMIHUDRAFT_217875 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 69.3218 bits (168), Expect = 1.472e-11 Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 0
Query: 161 APRRWISGKSEKPR-GSKDR-TGTKRDSNYLRCLSDCTTECRKPGQGPSKDNAECLEACQDYCCKTYEQCT 229
AP W+SGKS+ R SKD+ GTK+D YL CL+DC C+K SKD ++C + CQD CC TY+QCT
Sbjct: 52 APMLWLSGKSDPLRPTSKDKLDGTKKDPKYLSCLNDCVPRCQKDA---SKDRSDCFDECQDECCFTYQQCT 119
BLAST of EWM30613.1 vs. NCBI_GenBank
Match: gi|922857869|gb|KOO26065.1| (expressed unknown protein [Chrysochromulina sp. CCMP291]) HSP 1 Score: 71.2478 bits (173), Expect = 6.250e-11 Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 0
Query: 126 SLLVGALSLVTITPPRMVQAAESSTDNPSTETNPVAPRRWISGKSEKPR-GSKDR-TGTKRDSNYLRCLSDCTTECRKPGQGPSKDNAECLEACQDYCCKTYEQCTYT 231
++++ + T P ++ + D P+ +WISGKS+ R SKD+ GTK+D+ Y+ CL+DC + P K+ +CL+ CQ CC+TYEQCTYT
Sbjct: 211 NVILNVVRHAFATSPLLMPLVAHADDKPAP--------KWISGKSDPLRPTSKDKPDGTKKDNRYVSCLNDCVPRKQGPPGPNQKERVDCLDECQVECCETYEQCTYT 310
BLAST of EWM30613.1 vs. NCBI_GenBank
Match: gi|1072225397|gb|OEU10144.1| (hypothetical protein FRACYDRAFT_271216 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 66.6254 bits (161), Expect = 4.936e-10 Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0
Query: 164 RWISGKS-------EKPRGSKDRTGTKRDSNYLRCLSDCTTECR-KPG-QGPSKDNAECLEACQDYCCKTYEQCTYT 231
++ISGK+ K + D GT++D N+LR +SDC T+C+ PG G S+ +CL CQD CC TYEQC++
Sbjct: 89 KYISGKTPQIPGTEAKKKSDGDTKGTRKDPNFLRSISDCKTQCQIAPGTDGYSRSKMDCLSECQDICCTTYEQCSFN 165 The following BLAST results are available for this feature:
BLAST of EWM30613.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 8
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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