rna64, rna64 (mRNA) Nannochloropsis gaditana

Overview
Namerna64
Unique Namerna64
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length273
Alignment locationCM002455.1:182191..182690 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100129g8.1886.mrna
Orig protein idgnl|cribi|Naga_100129g8.1886
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:182191..182690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100129g8gene63Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna64rna64-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30608.1cds64Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna64 ID=rna64|Name=rna64|organism=Nannochloropsis gaditana|type=mRNA|length=273bp
ATGCTAAATGTGTATAGGGCGCGCGGAATGTCCTTGATTCTAACCCAAAC
CGTGGAGCAGGTCATTTTGTTTGTCGGTCGCTCCCTCGACAGAGACGCCA
TGGCACTCATCTCCTTGCTCGCGTTGAAAAGCTTTTGGTTCTTAATCATG
TCCGCCACTTGTTCTCCTGTAAGCTATCAAAATTTGCGCAGACAAACCAC
TCAAATCACGGGGTCATTGCACCCCTTGCACGCGATACTCCCTCGCTCAA
GCAATTTTGGGGTAGATAACTAG
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protein sequence of rna64

>rna64-protein ID=rna64-protein|Name=rna64|organism=Nannochloropsis gaditana|type=polypeptide|length=111bp
MSYKVACIAQESRFACWPSPRQGRHRITRCWKQNVSFHRISAAILPLYFE
LDQNLTFFLQFETRNNYLTIVSRVSTFLLEHEFKKRKKGKRRRTQDDFFS
NVSYEAIKQAR
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mRNA from alignment at CM002455.1:182191..182690+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna64 ID=rna64|Name=rna64|organism=Nannochloropsis gaditana|type=mRNA|length=500bp|location=Sequence derived from alignment at CM002455.1:182191..182690+ (Nannochloropsis gaditana)
ATGTCCTACAAAGTAGCCTGTATCGCACAGGAAAGTCGGTTTGCATGCTG
GCCGAGTCCTCGGCAGGGACGCCATCGGATAACCCGGTGTTGGAAGCAAA
ATGTTTCGTTTCACAGAATTAGCGCGGCGATAGTATGTCAGCTGCAAGCC
TGACGTGTGGCGCTTCAAAAGAACTTTTGCGCGTGAGGCAAATGTGGGCG
GGAAGACACAAGACATACATATTAAACATTAGACGCTTCTTGTCATCACA
CTGTAGGATCTACCGGAAATGAGCTCCCTGATTCTGTCATGAAAAGTTGC
CCCTGTATTTTGAATTGGATCAGAACTTGACATTTTTTCTGCAATTTGAA
ACGAGAAACAATTACCTCACGATTGTCTCTCGAGTTTCAACCTTTCTACT
TGAACATGAATTCAAGAAGCGTAAGAAGGGCAAGCGGAGGAGAACGCAAG
ATGATTTCTTTTCAAATGTGTCCTACGAAGCTATCAAACAGGCCCGATAA
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Coding sequence (CDS) from alignment at CM002455.1:182191..182690+

>rna64 ID=rna64|Name=rna64|organism=Nannochloropsis gaditana|type=CDS|length=672bp|location=Sequence derived from alignment at CM002455.1:182191..182690+ (Nannochloropsis gaditana)
ATGTCCTACAAAGTAGCCTGTATCGCACAGGAAAGTCGGTTTGCATGCTG
GCCGAGTCCTCGGCAGGGACGCCATCGGATAACCCGGTGTTGGAAGCAAA
ATGTTTCGTTTCACAGAATTAGCGCGGCGATATTGCCCCTGTATTTTGAA
TTGGATCAGAACTTGACATTTTTTCTGCAATTTGAAACGAGAAACAATTA
CCTCACGATTGTCTCTCGAGTTTCAACCTTTCTACTTGAACATGAATTCA
AGAAGCGTAAGAAGGGCAAGCGGAGGAGAACGCAAGATGATTTCTTTTCA
AATGTGTCCTACGAAGCTATCAAACAGGCCCGATAAATGTCCTACAAAGT
AGCCTGTATCGCACAGGAAAGTCGGTTTGCATGCTGGCCGAGTCCTCGGC
AGGGACGCCATCGGATAACCCGGTGTTGGAAGCAAAATGTTTCGTTTCAC
AGAATTAGCGCGGCGATATTGCCCCTGTATTTTGAATTGGATCAGAACTT
GACATTTTTTCTGCAATTTGAAACGAGAAACAATTACCTCACGATTGTCT
CTCGAGTTTCAACCTTTCTACTTGAACATGAATTCAAGAAGCGTAAGAAG
GGCAAGCGGAGGAGAACGCAAGATGATTTCTTTTCAAATGTGTCCTACGA
AGCTATCAAACAGGCCCGATAA
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Synonyms
Publications