NO09G04290.1, NO09G04290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G04290.1
Unique NameNO09G04290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length918
Alignment locationchr9:1279141..1280381 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1279141..1280381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO09G04290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G04290NO09G04290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G04290.1NO09G04290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G04290.1.cds1NO09G04290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04290.1.cds2NO09G04290.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04290.1.cds3NO09G04290.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G04290.1 ID=NO09G04290.1|Name=NO09G04290.1|organism=Nannochloropsis oceanica|type=mRNA|length=918bp
CAGGGGGAGACTGCTCGATTTGGGAGGCATTGACGCGTGCATGTGACCCA
ACAAAAAGCCCACCAACGCATGGGGGAGGAAGGTACAATGGTGCCGGGGA
GGCTTTACAAAATCATGGACTTTGCCATGAACTACTCCCACGATCACCGT
GAAGAGGCACAGGCCGAGTTTTTTGCCAAAAATCAGACGACTCTGCTGCC
GCTTGTGGTGTGGTTTCGGGCCCCGACGGGACTTGACGGAAAGCTGAAGA
TGCAGCAGCGTGTCCGCGTGTACCTCACCGCGGAACGCCGGCACTCCAAC
AACTTCTTGCAAAAGGTGCTGGATTGCTTCTTGGCGCAGTTCAAGGAGGT
GCTGAGGCAGCAGCAGGGTTGGAGGAGTGTGCGATGCGGCGGCTCTGCGT
ATGGAGCGACCGGTATGGGGGGCAGTTCAAGAGCAGAAGGCAGATGCGAT
GTTTTCAATTGTCTGGTCAAGCACAAGCAGTACCACGATAACGAGGAGTG
GGAGGCGGAGACGGGCATCCAGCTGAAGGCGAAATCCCGCGCCTTCGTAT
TTGTGGAGTTGGTGGGTGTGGACAATAATGTGTTGAGGGATATGGCGGGG
ATCAAGTCTCATCATTGCTTTGTGACGTGCGGCGGGATAAGGCGCACCAC
CTTTGGCCCCACCTTCAAGCGGGGGTGGGCTGTGATGGCCGAATGCAAGG
TGGACGATTGGGTGCTGATGCGTGCAGACGTGGACCAGTGCAAAGTATAT
TCGGAGGACAAGCCCAATAACTGGAGATGTCGTGGTAGTTTCCGGCTGGC
TCAAATCGCGGAGTTGCCGAAGGAGCACGCGACGGGAGGGATGTTGTCGT
CAAGGGCGACGACGAGCGAGGGAAATTTCCTTGTTTATAATTCGCAAGAG
CACAAGCAAGAGGAATAG
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protein sequence of NO09G04290.1

>NO09G04290.1-protein ID=NO09G04290.1-protein|Name=NO09G04290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MGEEGTMVPGRLYKIMDFAMNYSHDHREEAQAEFFAKNQTTLLPLVVWFR
APTGLDGKLKMQQRVRVYLTAERRHSNNFLQKVLDCFLAQFKEVLRQQQG
WRSVRCGGSAYGATGMGGSSRAEGRCDVFNCLVKHKQYHDNEEWEAETGI
QLKAKSRAFVFVELVGVDNNVLRDMAGIKSHHCFVTCGGIRRTTFGPTFK
RGWAVMAECKVDDWVLMRADVDQCKVYSEDKPNNWRCRGSFRLAQIAELP
KEHATGGMLSSRATTSEGNFLVYNSQEHKQEE*
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mRNA from alignment at chr9:1279141..1280381+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G04290.1 ID=NO09G04290.1|Name=NO09G04290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1241bp|location=Sequence derived from alignment at chr9:1279141..1280381+ (Nannochloropsis oceanica)
CAGGGGGAGACTGCTCGATTTGGGAGGCATTGACGCGTGCATGTGACCCA
ACAAAAAGCCCACCAACGCATGGGGGAGGAAGGTACAATGGTGCCGGGGA
GGCTTTACAAAATCATGGACTTTGCCATGAACTACTCCCACGATCACCGT
GAAGAGGCACAGGCCGAGTTTTTTGCCAAAAATCAGACGACTCTGCTGCC
GCTTGTGGTGTGGTTTCGGGCCCCGACGGGACTTGACGGAAAGCTGAAGA
TGCAGCAGCGTGTCCGCGTGTACCTCACCGCGGAACGCCGGCACTCCAAC
AACTTCTTGCAAAAGGTGCTGGATTGCTTCTTGGCGCAGTTCAAGGAGGT
GCTGAGGCAGCAGCAGGGTTGGAGGAGTGTGCGATGCGGCGGCTCTGCGT
ATGGAGCGACCGGTATGGGGGGCAGTTCAAGAGCAGAAGGCAGATGCGTA
AATTGTTGGGTCTAGTGAATGACAAACGATTCAACCTTGAGGGTACCGGG
CACCGAGCACCAAGCACCATTTCTTCGCCAGATGCCACGGTAAGGGGCCA
TGCGATGGGTTGGGAGAGTGGACAAAGACGTTCCTGCGGGACGAGGAGAT
GAAGAAGGGTAACCACCTCGGTACTTCCCAGGATGTTTTCAATTGTCTGG
TCAAGCACAAGCAGTACCACGATAACGAGGAGTGGGAGGCGGAGACGGGC
ATCCAGCTGAAGGCGAAATCCCGCGCCTTCGTATTTGTGGAGTTGGTGGG
TGTGGACAATAATGTGTTGAGGGATATGGCGGGGATCAAGTCTCATCATT
GCTTTGTGACGTGCGGCGGGTACGTGTTGATGTTTCCTACCTCCTGCACG
TGCCAGCCTTGCAGGAAAATGGAATATGATAAATGCGAGCTGGTGGCGTC
AAGGGAGCGGGGAGGGGGGAAACGGATAGAGATGAAGACGTTCGTTTCTG
CTATTCAGGATAAGGCGCACCACCTTTGGCCCCACCTTCAAGCGGGGGTG
GGCTGTGATGGCCGAATGCAAGGTGGACGATTGGGTGCTGATGCGTGCAG
ACGTGGACCAGTGCAAAGTATATTCGGAGGACAAGCCCAATAACTGGAGA
TGTCGTGGTAGTTTCCGGCTGGCTCAAATCGCGGAGTTGCCGAAGGAGCA
CGCGACGGGAGGGATGTTGTCGTCAAGGGCGACGACGAGCGAGGGAAATT
TCCTTGTTTATAATTCGCAAGAGCACAAGCAAGAGGAATAG
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Coding sequence (CDS) from alignment at chr9:1279141..1280381+

>NO09G04290.1 ID=NO09G04290.1|Name=NO09G04290.1|organism=Nannochloropsis oceanica|type=CDS|length=849bp|location=Sequence derived from alignment at chr9:1279141..1280381+ (Nannochloropsis oceanica)
ATGGGGGAGGAAGGTACAATGGTGCCGGGGAGGCTTTACAAAATCATGGA
CTTTGCCATGAACTACTCCCACGATCACCGTGAAGAGGCACAGGCCGAGT
TTTTTGCCAAAAATCAGACGACTCTGCTGCCGCTTGTGGTGTGGTTTCGG
GCCCCGACGGGACTTGACGGAAAGCTGAAGATGCAGCAGCGTGTCCGCGT
GTACCTCACCGCGGAACGCCGGCACTCCAACAACTTCTTGCAAAAGGTGC
TGGATTGCTTCTTGGCGCAGTTCAAGGAGGTGCTGAGGCAGCAGCAGGGT
TGGAGGAGTGTGCGATGCGGCGGCTCTGCGTATGGAGCGACCGGTATGGG
GGGCAGTTCAAGAGCAGAAGGCAGATGCGATGTTTTCAATTGTCTGGTCA
AGCACAAGCAGTACCACGATAACGAGGAGTGGGAGGCGGAGACGGGCATC
CAGCTGAAGGCGAAATCCCGCGCCTTCGTATTTGTGGAGTTGGTGGGTGT
GGACAATAATGTGTTGAGGGATATGGCGGGGATCAAGTCTCATCATTGCT
TTGTGACGTGCGGCGGGATAAGGCGCACCACCTTTGGCCCCACCTTCAAG
CGGGGGTGGGCTGTGATGGCCGAATGCAAGGTGGACGATTGGGTGCTGAT
GCGTGCAGACGTGGACCAGTGCAAAGTATATTCGGAGGACAAGCCCAATA
ACTGGAGATGTCGTGGTAGTTTCCGGCTGGCTCAAATCGCGGAGTTGCCG
AAGGAGCACGCGACGGGAGGGATGTTGTCGTCAAGGGCGACGACGAGCGA
GGGAAATTTCCTTGTTTATAATTCGCAAGAGCACAAGCAAGAGGAATAG
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Synonyms
Publications