NO09G01340.1, NO09G01340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01340.1
Unique NameNO09G01340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1878
Alignment locationchr9:439870..441747 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:439870..441747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01340.1 vs.
Match: EWM27635.1 (Orn/Lys/Arg decarboxylase [Nannochloropsis gaditana])

HSP 1 Score: 792.7 bits (2046), Expect = 8.100e-226
Identity = 416/578 (71.97%), Postives = 472/578 (81.66%), Query Frame = 0 
Query:   53 RRWTSQEERQQVEQSKTPLVEALALAATRIKAPFFFPGHKMGRGLPVGLSGPFARSAADADVVAKRRHVRDSVWQHDLPEIPELDNLFAPEGPIQEAEMLAAQAFGGAQRTWFLVNGSTAGVLAALLAVVRRHQQQQQQQP--NGASRISKVLLPRNVHKSAINGLILAGADPVFLSPVYDKEWDICHGIPIDGEGGLDDALKVHGPGGDIAAVLLVSPTYHGVIMDIKQAALLCARYKVPLIVDEAHGAHLAFLERD-GQTAAIKPAAAAALEGALALGADLVVQSTHKTLTAVSQCAMMHAGNGPLVDEGLLEFVGSALQFVQSSSPNYVLLASLDGARWQLAAPAGEGRGALRQAQVLAKKAKQLLRSETPFPVLDLPVVGSMRGAFVGLDPLRVTVGMMGTRMSGFDADEVLIEEHGVYAELPASRTLTFAVGPGNVDEDVERLVAAFKALAASLQEIELKEGKK--GKDMTPNVVVEFPAFDGQQAAVGTRRCGPREAYFTASEVMSTSDASIVGRASAETVCPYPPGIPVLLPGELITTEVLRFLQGVLDAGGSVTGCSDPSLGMLRVLCLE 626
            RRW  +      +QSK+P+VEAL+LAA RIKAPFFFPGHKMGRGLPVGL GPFA +      + K R  RD VWQHDLPEIPELDNLFAPEGPI++AE LAA+ FGGAQRTWFLVNGSTAGVLAALLA+VRRHQQ+ QQ P  +G S  SKVLLPRNVHKSAINGLIL+GA PVFLSPVYD  WDICHG+PI  E  L  AL+ H  G ++AAVLLVSPTYHG +MDI+QAALLCA++KVPLIVDEAHGAHLAFLE +  +   + P A+ A+ GALA GADLVVQSTHKTLTAVSQCAMMHAG GPLVD  +LEFVGSALQ VQSSSPNYVLLASLDGARWQL +P G GR AL +AQ LA KAK+LL  ETPFP+L  P      GAFVGLDPLR+TVG MGT MSGFDADEVLIEEHGVYAELPASRTLTFAVGPG+ +ED++ LVAAFKAL A+L +   ++G +    +   + + +FP FDG+QAA G+ +CGPR+AYFTASEV+ST+D  +VGRASAETVCPYPPGIPVLLPGE+IT EVLRFL+GVL  GGSVTGCSDPSLG +RVLC E
Sbjct:   45 RRWAREHG---ADQSKSPIVEALSLAAARIKAPFFFPGHKMGRGLPVGLPGPFAETNT---ALNKTRVHRDDVWQHDLPEIPELDNLFAPEGPIRDAETLAAETFGGAQRTWFLVNGSTAGVLAALLALVRRHQQEGQQHPARSGRSIQSKVLLPRNVHKSAINGLILSGAVPVFLSPVYDPAWDICHGVPI--ESALQQALEEHASGSEVAAVLLVSPTYHGAVMDIEQAALLCAKFKVPLIVDEAHGAHLAFLEVEVNEPGNVGPLASRAMTGALAQGADLVVQSTHKTLTAVSQCAMMHAGKGPLVDSAMLEFVGSALQLVQSSSPNYVLLASLDGARWQLGSPLGGGRAALHRAQKLAAKAKRLLLEETPFPILK-PPDRPKGGAFVGLDPLRLTVGTMGTGMSGFDADEVLIEEHGVYAELPASRTLTFAVGPGSEEEDIDCLVAAFKAL-ATLVDKGKRDGSQDMAGEEASSFMTDFPPFDGKQAAAGSLKCGPRDAYFTASEVLSTNDERVVGRASAETVCPYPPGIPVLLPGEIITVEVLRFLKGVLSTGGSVTGCSDPSLGKIRVLCWE 612
The following BLAST results are available for this feature:
BLAST of NO09G01340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27635.18.100e-22671.97Orn/Lys/Arg decarboxylase [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01340NO09G01340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01340.1NO09G01340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01340.1.cds1NO09G01340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01340.1 ID=NO09G01340.1|Name=NO09G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1878bp
ATGCGGCTCCCTGCACTCCTTTCCTTCCTTCTTACCCTTTTAAATCCACT
ACAAACAACCTACGCCTTCGTCATCGTCCCCCGTCACCACCACCACTACC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTATTCATTCAAAGATCAA
TGTTCACGGAGATGGACAAGCCAAGAAGAACGACAGCAAGTGGAGCAGTC
AAAAACACCCCTGGTTGAGGCTCTCGCCCTAGCTGCCACGCGCATCAAAG
CTCCCTTTTTCTTCCCAGGTCATAAAATGGGACGCGGATTGCCTGTAGGG
CTTTCAGGACCCTTCGCACGAAGCGCAGCCGATGCCGATGTTGTTGCTAA
ACGTAGACATGTCAGGGATAGCGTGTGGCAGCATGACTTACCCGAGATTC
CAGAGCTCGATAATTTGTTCGCTCCCGAGGGGCCTATTCAAGAAGCGGAG
ATGTTGGCTGCGCAGGCATTTGGCGGGGCTCAGCGAACGTGGTTTCTGGT
CAATGGTAGTACCGCTGGGGTTCTGGCAGCATTGCTGGCAGTGGTACGAC
GCCATCAGCAGCAGCAGCAGCAACAACCTAATGGAGCATCACGAATTAGC
AAAGTGCTTCTTCCACGAAATGTGCACAAGTCAGCGATTAATGGTTTGAT
TCTTGCGGGAGCCGATCCAGTGTTTCTCAGTCCTGTCTATGACAAAGAAT
GGGATATTTGCCACGGCATCCCCATAGATGGTGAAGGTGGGTTGGATGAC
GCTTTAAAAGTACATGGCCCCGGTGGGGATATAGCTGCGGTACTTTTGGT
TTCGCCGACTTACCACGGTGTGATAATGGATATCAAACAAGCTGCCCTTC
TTTGTGCCAGGTACAAGGTTCCGCTTATTGTCGATGAGGCACATGGCGCC
CACTTAGCATTTCTGGAACGAGACGGGCAGACAGCAGCAATAAAACCAGC
AGCGGCTGCGGCACTGGAGGGGGCTTTGGCGCTAGGGGCGGACTTGGTGG
TGCAGAGCACGCACAAGACGCTGACGGCGGTGAGTCAGTGTGCGATGATG
CATGCAGGGAACGGTCCATTGGTTGATGAGGGATTGCTTGAGTTTGTGGG
TTCCGCTTTGCAGTTCGTCCAGAGCAGCTCGCCAAATTATGTGTTGCTGG
CTTCGTTGGACGGGGCAAGATGGCAGCTTGCGGCTCCAGCAGGGGAGGGG
AGGGGAGCTTTGCGACAGGCGCAGGTATTGGCGAAAAAGGCAAAGCAGTT
GTTGAGGAGCGAGACGCCATTTCCGGTTTTGGATCTGCCAGTAGTGGGGT
CGATGAGGGGAGCTTTTGTGGGGTTGGACCCTCTCAGAGTTACGGTTGGA
ATGATGGGGACGAGGATGAGTGGGTTTGATGCGGACGAGGTCTTGATTGA
GGAGCATGGGGTATATGCAGAGTTACCGGCATCGAGGACATTGACTTTTG
CGGTCGGCCCAGGGAACGTGGATGAGGACGTGGAGAGATTAGTTGCTGCA
TTTAAGGCTTTGGCCGCCTCTTTGCAGGAGATAGAGCTAAAGGAAGGAAA
GAAGGGCAAGGACATGACCCCAAATGTCGTCGTTGAGTTTCCCGCCTTTG
ATGGGCAGCAAGCAGCGGTGGGCACCCGGCGGTGTGGGCCCCGTGAAGCT
TATTTCACAGCATCTGAGGTAATGTCGACGAGCGATGCGTCAATTGTGGG
GCGTGCGAGTGCAGAGACTGTTTGCCCCTATCCGCCCGGGATTCCTGTCT
TGTTGCCGGGGGAATTAATCACTACGGAGGTCCTGCGATTTTTGCAGGGG
GTACTGGATGCGGGAGGGTCGGTGACGGGGTGTAGTGATCCGAGCTTGGG
GATGCTAAGGGTGCTTTGCTTGGAGTAG
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protein sequence of NO09G01340.1

>NO09G01340.1-protein ID=NO09G01340.1-protein|Name=NO09G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=626bp
MRLPALLSFLLTLLNPLQTTYAFVIVPRHHHHYQQQQQQQQQQQYSFKDQ
CSRRWTSQEERQQVEQSKTPLVEALALAATRIKAPFFFPGHKMGRGLPVG
LSGPFARSAADADVVAKRRHVRDSVWQHDLPEIPELDNLFAPEGPIQEAE
MLAAQAFGGAQRTWFLVNGSTAGVLAALLAVVRRHQQQQQQQPNGASRIS
KVLLPRNVHKSAINGLILAGADPVFLSPVYDKEWDICHGIPIDGEGGLDD
ALKVHGPGGDIAAVLLVSPTYHGVIMDIKQAALLCARYKVPLIVDEAHGA
HLAFLERDGQTAAIKPAAAAALEGALALGADLVVQSTHKTLTAVSQCAMM
HAGNGPLVDEGLLEFVGSALQFVQSSSPNYVLLASLDGARWQLAAPAGEG
RGALRQAQVLAKKAKQLLRSETPFPVLDLPVVGSMRGAFVGLDPLRVTVG
MMGTRMSGFDADEVLIEEHGVYAELPASRTLTFAVGPGNVDEDVERLVAA
FKALAASLQEIELKEGKKGKDMTPNVVVEFPAFDGQQAAVGTRRCGPREA
YFTASEVMSTSDASIVGRASAETVCPYPPGIPVLLPGELITTEVLRFLQG
VLDAGGSVTGCSDPSLGMLRVLCLE*
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mRNA from alignment at chr9:439870..441747+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01340.1 ID=NO09G01340.1|Name=NO09G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1878bp|location=Sequence derived from alignment at chr9:439870..441747+ (Nannochloropsis oceanica)
ATGCGGCTCCCTGCACTCCTTTCCTTCCTTCTTACCCTTTTAAATCCACT
ACAAACAACCTACGCCTTCGTCATCGTCCCCCGTCACCACCACCACTACC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTATTCATTCAAAGATCAA
TGTTCACGGAGATGGACAAGCCAAGAAGAACGACAGCAAGTGGAGCAGTC
AAAAACACCCCTGGTTGAGGCTCTCGCCCTAGCTGCCACGCGCATCAAAG
CTCCCTTTTTCTTCCCAGGTCATAAAATGGGACGCGGATTGCCTGTAGGG
CTTTCAGGACCCTTCGCACGAAGCGCAGCCGATGCCGATGTTGTTGCTAA
ACGTAGACATGTCAGGGATAGCGTGTGGCAGCATGACTTACCCGAGATTC
CAGAGCTCGATAATTTGTTCGCTCCCGAGGGGCCTATTCAAGAAGCGGAG
ATGTTGGCTGCGCAGGCATTTGGCGGGGCTCAGCGAACGTGGTTTCTGGT
CAATGGTAGTACCGCTGGGGTTCTGGCAGCATTGCTGGCAGTGGTACGAC
GCCATCAGCAGCAGCAGCAGCAACAACCTAATGGAGCATCACGAATTAGC
AAAGTGCTTCTTCCACGAAATGTGCACAAGTCAGCGATTAATGGTTTGAT
TCTTGCGGGAGCCGATCCAGTGTTTCTCAGTCCTGTCTATGACAAAGAAT
GGGATATTTGCCACGGCATCCCCATAGATGGTGAAGGTGGGTTGGATGAC
GCTTTAAAAGTACATGGCCCCGGTGGGGATATAGCTGCGGTACTTTTGGT
TTCGCCGACTTACCACGGTGTGATAATGGATATCAAACAAGCTGCCCTTC
TTTGTGCCAGGTACAAGGTTCCGCTTATTGTCGATGAGGCACATGGCGCC
CACTTAGCATTTCTGGAACGAGACGGGCAGACAGCAGCAATAAAACCAGC
AGCGGCTGCGGCACTGGAGGGGGCTTTGGCGCTAGGGGCGGACTTGGTGG
TGCAGAGCACGCACAAGACGCTGACGGCGGTGAGTCAGTGTGCGATGATG
CATGCAGGGAACGGTCCATTGGTTGATGAGGGATTGCTTGAGTTTGTGGG
TTCCGCTTTGCAGTTCGTCCAGAGCAGCTCGCCAAATTATGTGTTGCTGG
CTTCGTTGGACGGGGCAAGATGGCAGCTTGCGGCTCCAGCAGGGGAGGGG
AGGGGAGCTTTGCGACAGGCGCAGGTATTGGCGAAAAAGGCAAAGCAGTT
GTTGAGGAGCGAGACGCCATTTCCGGTTTTGGATCTGCCAGTAGTGGGGT
CGATGAGGGGAGCTTTTGTGGGGTTGGACCCTCTCAGAGTTACGGTTGGA
ATGATGGGGACGAGGATGAGTGGGTTTGATGCGGACGAGGTCTTGATTGA
GGAGCATGGGGTATATGCAGAGTTACCGGCATCGAGGACATTGACTTTTG
CGGTCGGCCCAGGGAACGTGGATGAGGACGTGGAGAGATTAGTTGCTGCA
TTTAAGGCTTTGGCCGCCTCTTTGCAGGAGATAGAGCTAAAGGAAGGAAA
GAAGGGCAAGGACATGACCCCAAATGTCGTCGTTGAGTTTCCCGCCTTTG
ATGGGCAGCAAGCAGCGGTGGGCACCCGGCGGTGTGGGCCCCGTGAAGCT
TATTTCACAGCATCTGAGGTAATGTCGACGAGCGATGCGTCAATTGTGGG
GCGTGCGAGTGCAGAGACTGTTTGCCCCTATCCGCCCGGGATTCCTGTCT
TGTTGCCGGGGGAATTAATCACTACGGAGGTCCTGCGATTTTTGCAGGGG
GTACTGGATGCGGGAGGGTCGGTGACGGGGTGTAGTGATCCGAGCTTGGG
GATGCTAAGGGTGCTTTGCTTGGAGTAG
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Coding sequence (CDS) from alignment at chr9:439870..441747+

>NO09G01340.1 ID=NO09G01340.1|Name=NO09G01340.1|organism=Nannochloropsis oceanica|type=CDS|length=1878bp|location=Sequence derived from alignment at chr9:439870..441747+ (Nannochloropsis oceanica)
ATGCGGCTCCCTGCACTCCTTTCCTTCCTTCTTACCCTTTTAAATCCACT
ACAAACAACCTACGCCTTCGTCATCGTCCCCCGTCACCACCACCACTACC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTATTCATTCAAAGATCAA
TGTTCACGGAGATGGACAAGCCAAGAAGAACGACAGCAAGTGGAGCAGTC
AAAAACACCCCTGGTTGAGGCTCTCGCCCTAGCTGCCACGCGCATCAAAG
CTCCCTTTTTCTTCCCAGGTCATAAAATGGGACGCGGATTGCCTGTAGGG
CTTTCAGGACCCTTCGCACGAAGCGCAGCCGATGCCGATGTTGTTGCTAA
ACGTAGACATGTCAGGGATAGCGTGTGGCAGCATGACTTACCCGAGATTC
CAGAGCTCGATAATTTGTTCGCTCCCGAGGGGCCTATTCAAGAAGCGGAG
ATGTTGGCTGCGCAGGCATTTGGCGGGGCTCAGCGAACGTGGTTTCTGGT
CAATGGTAGTACCGCTGGGGTTCTGGCAGCATTGCTGGCAGTGGTACGAC
GCCATCAGCAGCAGCAGCAGCAACAACCTAATGGAGCATCACGAATTAGC
AAAGTGCTTCTTCCACGAAATGTGCACAAGTCAGCGATTAATGGTTTGAT
TCTTGCGGGAGCCGATCCAGTGTTTCTCAGTCCTGTCTATGACAAAGAAT
GGGATATTTGCCACGGCATCCCCATAGATGGTGAAGGTGGGTTGGATGAC
GCTTTAAAAGTACATGGCCCCGGTGGGGATATAGCTGCGGTACTTTTGGT
TTCGCCGACTTACCACGGTGTGATAATGGATATCAAACAAGCTGCCCTTC
TTTGTGCCAGGTACAAGGTTCCGCTTATTGTCGATGAGGCACATGGCGCC
CACTTAGCATTTCTGGAACGAGACGGGCAGACAGCAGCAATAAAACCAGC
AGCGGCTGCGGCACTGGAGGGGGCTTTGGCGCTAGGGGCGGACTTGGTGG
TGCAGAGCACGCACAAGACGCTGACGGCGGTGAGTCAGTGTGCGATGATG
CATGCAGGGAACGGTCCATTGGTTGATGAGGGATTGCTTGAGTTTGTGGG
TTCCGCTTTGCAGTTCGTCCAGAGCAGCTCGCCAAATTATGTGTTGCTGG
CTTCGTTGGACGGGGCAAGATGGCAGCTTGCGGCTCCAGCAGGGGAGGGG
AGGGGAGCTTTGCGACAGGCGCAGGTATTGGCGAAAAAGGCAAAGCAGTT
GTTGAGGAGCGAGACGCCATTTCCGGTTTTGGATCTGCCAGTAGTGGGGT
CGATGAGGGGAGCTTTTGTGGGGTTGGACCCTCTCAGAGTTACGGTTGGA
ATGATGGGGACGAGGATGAGTGGGTTTGATGCGGACGAGGTCTTGATTGA
GGAGCATGGGGTATATGCAGAGTTACCGGCATCGAGGACATTGACTTTTG
CGGTCGGCCCAGGGAACGTGGATGAGGACGTGGAGAGATTAGTTGCTGCA
TTTAAGGCTTTGGCCGCCTCTTTGCAGGAGATAGAGCTAAAGGAAGGAAA
GAAGGGCAAGGACATGACCCCAAATGTCGTCGTTGAGTTTCCCGCCTTTG
ATGGGCAGCAAGCAGCGGTGGGCACCCGGCGGTGTGGGCCCCGTGAAGCT
TATTTCACAGCATCTGAGGTAATGTCGACGAGCGATGCGTCAATTGTGGG
GCGTGCGAGTGCAGAGACTGTTTGCCCCTATCCGCCCGGGATTCCTGTCT
TGTTGCCGGGGGAATTAATCACTACGGAGGTCCTGCGATTTTTGCAGGGG
GTACTGGATGCGGGAGGGTCGGTGACGGGGTGTAGTGATCCGAGCTTGGG
GATGCTAAGGGTGCTTTGCTTGGAGTAG
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Synonyms
Publications