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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:320396..324289 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G00930.2 vs.
Match: EWM27701.1 (hypothetical protein Naga_100104g8 [Nannochloropsis gaditana]) HSP 1 Score: 381.3 bits (978), Expect = 5.800e-102 Identity = 225/392 (57.40%), Postives = 274/392 (69.90%), Query Frame = 0
Query: 8 MLVVGRSRLLYMFCFLCCYQAVATMVAYMKGPGRRPEGIRLSHAVITSSTRVRYDCTFLGPALAHQARRRISYSGISP---LHSSTVQQDEARASRAGNNPALAPGKAIRAQRLKDLLLEKELRNDISTAEFALNLDIARIEPRSADGKAGDAGAGKGSGASYSSKMRPRGVIDYEKIAEKLEKSLELVDRRQGRMAAAVGWGARAGGDTEGTKAE-PRSIGEESTLRVTKRLSETRSELQNVLWRVRASMVGTNS-GNTKI------GEGSGTPGGATSAAEVGAGTTTA-------GEEGERPMNPFTVFVREDGTVDWDGAFQSGKELAKYSGEVFERLQGKSPGEEETPPKASTSLATIDATPGMQVLQQFLQQLESGLRSAEDERDK 382
+L GR RL ++ C +CC+Q +T +A++ G G G+ H +S + + G L H + I +P L S TVQ+DE R +R G+NPAL PGK IRAQRLKDLLLEKELRNDISTAEFAL LD+ R+E + D K +G G+G Y+ K++PRGVIDYEKIAEKLEKSLEL+DRRQ R++AAV +R G++EG A +GEE+ LRVT+RLSETR+ELQNVL+RVRASM S G K G S + GG +S+A VGA + TA GEE ER +NP TVFVREDGTVDWDGAFQSGKELAKYSGEV ERLQGKSPGEE P KASTSLATID++PGMQ+LQ++LQ+LES LR+AEDERDK
Sbjct: 5 LLAGGRGRLEWLICLICCFQTASTALAFVCGQGGLLSGLVSKHDRRSSQSTGFREGLPSGLRLHHLPPQGIGRHDETPVVALFSRTVQEDETRGTRVGSNPALTPGKGIRAQRLKDLLLEKELRNDISTAEFALRLDVPRVESEAVDAKVSKSGVGEGRKTPYTPKLKPRGVIDYEKIAEKLEKSLELIDRRQERLSAAVSRDSRLSGNSEGDPASGTHFVGEEAALRVTRRLSETRTELQNVLFRVRASMASAASDGGGKFTSGGGGGSSSSSKGGNSSSAFVGAASGTAAAGGVPGGEESERSLNPLTVFVREDGTVDWDGAFQSGKELAKYSGEVLERLQGKSPGEEAPPAKASTSLATIDSSPGMQLLQRYLQELESELRAAEDERDK 396
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G00930.2 ID=NO09G00930.2|Name=NO09G00930.2|organism=Nannochloropsis oceanica|type=mRNA|length=2625bp GGGAATGATTATGGTGATGAGGCGAGGGAGCTTCGCAATGGAAGATTTAA CTGGTGCAAGAATTGGGCATAACACACGCACACACTGAGTTAAATATAGC CCTGCTTACCAGGCTGACAAGGGTCGTGTGGTATGGTGCATGGTGCATGG GTTTAGGGGGCGTTTAGCCCCTGGGTTTGAAGAAGCGCGCGCCGTTTGCA CGGCTTCCCCGATGATGACGATGTCAGATGTGCAGACCTGCGGTCCGAGC AAGCACGCATATTTCTTGACACTGCTTATCACGCCATCCTTCGCACTCCA CATAATTACAAAGGTGCAGGTCAGCAGGGGACGTTTTTGTGGGTTCTCTG AATTGCTCGTGGCTGGGTGCTGCTGCCTTATCCTCCACTCCTCCCCTCTC AGGAATCCTCGCGACATAGCTACGGTAAGAGAAAAAGATAGATCCTGCCA CCCTATCGATGTCGGGAATTGTTAGGAACATGCTAGTTGTCGGGCGCAGC CGATTGCTATACATGTTTTGCTTCCTATGCTGCTACCAGGCGGTGGCCAC GATGGTGGCCTACATGAAAGGACCAGGACGCCGACCTGAGGGCATTCGCC TCTCGCATGCTGTCATCACATCATCGACCAGGGTTCGCTACGATTGTACT TTTCTCGGGCCTGCCTTGGCCCACCAGGCACGCAGGAGGATATCATATTC TGGAATCTCACCGCTTCATAGCAGCACGGTGCAGCAAGACGAGGCGCGGG CGTCGCGGGCAGGCAACAACCCGGCCTTGGCTCCGGGCAAGGCCATCCGA GCCCAACGCCTCAAGGACTTGCTATTGGAGAAGGAACTCCGCAACGATAT CTCCACAGCCGAGTTCGCATTAAATTTGGACATCGCACGGATAGAGCCAC GAAGCGCCGATGGCAAGGCCGGTGATGCGGGGGCTGGCAAGGGTAGTGGT GCATCCTATTCCTCCAAAATGAGGCCGCGCGGTGTGATTGATTATGAGAA GATCGCGGAGAAGCTGGAAAAGAGTTTGGAGCTCGTTGACCGCCGACAGG GACGTATGGCAGCAGCCGTCGGCTGGGGTGCACGCGCGGGGGGGGATACT GAAGGAACCAAAGCTGAGCCCCGATCTATAGGGGAGGAATCCACCCTTCG TGTGACGAAACGACTAAGCGAGACGCGGAGCGAGCTCCAAAATGTCCTGT GGAGGGTCCGGGCATCCATGGTGGGTACTAACAGCGGGAACACTAAGATT GGGGAGGGTAGTGGCACGCCGGGTGGGGCCACCAGCGCAGCTGAGGTAGG TGCTGGGACGACAACAGCTGGAGAGGAGGGTGAGCGGCCCATGAACCCAT TCACGGTGTTCGTGCGAGAAGATGGGACGGTGGACTGGGACGGGGCTTTC CAGAGTGGCAAAGAGCTAGCCAAATACAGTGGGGAGGTTTTTGAGCGGCT GCAAGGCAAGAGTCCGGGGGAGGAGGAAACGCCACCTAAGGCGAGCACCA GTCTGGCCACAATTGACGCCACCCCAGGCATGCAAGTTCTGCAGCAGTTT TTGCAGCAGCTCGAGTCGGGACTGCGCTCTGCCGAAGATGAGCGTGATAA GATTTTAGAATTGCACAAGGCTCTGCGTAAGCAAGGTTTGGATGTAAGTA AGGCGCAGAAGGGTGAGCTCCGCATCGCTGAGGACCAGGCCGTGGAGATG AGGAGACGAGTTGAACTCCAGCGGCTGGACATGGACATGGAGCGTGTCTG TGCGTACATTGAGCAGGAGATCGATCAGTCCACCTCGATCCGCGAGCAGA AGCTGTTGGTGGCCGAATTTGGGCTCCTGGACGCCCAACTATCCACGCTC TTGACCATGCTACAGGCTTCCGAGCCGTACATGGACGGCTCCTCATCGCT GCTGGAACTTGACGAGGACGAATTGCGTGTGGTCGCGAGCGAGGTGCAGG ACCTCAAGACCCGCCTGGGCCTCGTGGAGGATACTACGGGCGGCCCCAAA GTCGACTGGTCACTGTTCAACGCGTATGTGCAAGAGAGCATCGGCAAGAT TCGCAAGGGTGTTTCGTTCTACGTGACAGGCGGCAAGCTCTTGACATCCG ACCTCCAGTACGCTTGGTGGCTCATATCTCGCGCTGCGCAAGGCTACACT CTCAAGCCGCGCGAGGTGCGAACGCTGCAGCGCACGGCCAAGGACCTATT GACCCTGATCCCTTTTACCATTATTCTCATTATTCCCTTGACACCGATCG GGCATGTGCTTATCTTCTCCCTCATTCAGCGCATTTTCCCCGACTTCTTT CCGAGCACTTTCACCGAGCGTCGTCAGAACCTCTCCAAAATGTATGATGA AATCGACAAGAAACCGTCGGTCGAAGGCACCCCACCGCCCTAAACTGGTC AGTAGTTCCAAACATGTGGCCATGCCTCGGAGTCTAATGCGAGCAAGGAC TATGAGAAGATGTGAGACGCGATAATAGCGGGTATGTAGCATAATTAGTT TAATAATTTAAAACGTGTCTGCATGTGCGACCTTACGGAGCGAACGAACA TTCCAGTTACTTGCAATAAAAAAGAGTCAAAATTAAGTGTTGGAAAGCGC AAAGACTTTCCAGGTACAAGTTATT back to topprotein sequence of NO09G00930.2 >NO09G00930.2-protein ID=NO09G00930.2-protein|Name=NO09G00930.2|organism=Nannochloropsis oceanica|type=polypeptide|length=645bp MSGIVRNMLVVGRSRLLYMFCFLCCYQAVATMVAYMKGPGRRPEGIRLSH AVITSSTRVRYDCTFLGPALAHQARRRISYSGISPLHSSTVQQDEARASR AGNNPALAPGKAIRAQRLKDLLLEKELRNDISTAEFALNLDIARIEPRSA DGKAGDAGAGKGSGASYSSKMRPRGVIDYEKIAEKLEKSLELVDRRQGRM AAAVGWGARAGGDTEGTKAEPRSIGEESTLRVTKRLSETRSELQNVLWRV RASMVGTNSGNTKIGEGSGTPGGATSAAEVGAGTTTAGEEGERPMNPFTV FVREDGTVDWDGAFQSGKELAKYSGEVFERLQGKSPGEEETPPKASTSLA TIDATPGMQVLQQFLQQLESGLRSAEDERDKILELHKALRKQGLDVSKAQ KGELRIAEDQAVEMRRRVELQRLDMDMERVCAYIEQEIDQSTSIREQKLL VAEFGLLDAQLSTLLTMLQASEPYMDGSSSLLELDEDELRVVASEVQDLK TRLGLVEDTTGGPKVDWSLFNAYVQESIGKIRKGVSFYVTGGKLLTSDLQ YAWWLISRAAQGYTLKPREVRTLQRTAKDLLTLIPFTIILIIPLTPIGHV LIFSLIQRIFPDFFPSTFTERRQNLSKMYDEIDKKPSVEGTPPP* back to topmRNA from alignment at chr9:320396..324289+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G00930.2 ID=NO09G00930.2|Name=NO09G00930.2|organism=Nannochloropsis oceanica|type=mRNA|length=3894bp|location=Sequence derived from alignment at chr9:320396..324289+ (Nannochloropsis oceanica) GGGAATGATTATGGTGATGAGGCGAGGGAGCTTCGCAATGGAAGATTTAA
CTGGTGCAAGAATTGGGCATAACACACGCACACACTGAGTTAAATATAGC
CCTGCTTACCAGGCTGACAAGGGTCGTGTGGTATGGTGCATGGTGCATGG
GTTTAGGGGGCGTTTAGCCCCTGGGTTTGAAGAAGCGCGCGCCGTTTGCA
CGGCTTCCCCGATGATGACGATGTCAGATGTGCAGACCTGCGGTCCGAGC
AAGCACGCATATTTCTTGACACTGCTTATCACGCCATCCTTCGCACTCCA
CATAATTACAAAGGTGCAGGTCAGCAGGGGACGTTTTTGTGGGTTCTCTG
AATTGCTCGTGGCTGGGTGCTGCTGCCTTATCCTCCACTCCTCCCCTCTC
AGGAATCCTCGCGACATAGCTACGGTAAGAGAAAAAGGTAAGCGCTGGCG
GAGCTCTTAGGTGAAACCTGCGTCTTGAATAAGTGGCACGAAATTGGTTG
CCATGTAGGGATAGTGAAGACGGTAATTGTTTCCGTTCCTCATTCTGCTT
CCATACGTAGTGAGCGCCCGCTCCTTACCTCGTCACATTTGATGATCTAG
CGCGCTGCGTGCCATATAGGAACACTTGGCAATTCGTCGATGCCCATAAT
CTGTTTTTATTTTACACACACTAGATAGATCCTGCCACCCTATCGATGTC
GGGAATTGTTAGGAACATGCTAGTTGTCGGGCGCAGCCGATTGCTATACA
TGTTTTGCTTCCTATGCTGCTACCAGGCGGTGGCCACGATGGTGGCCTAC
ATGAAAGGACCAGGACGCCGACCTGAGGGCATTCGCCTCTCGCATGCTGT
CATCACATCATCGGTAAGACAATAAAAAGACCTATACGTGCTGTTATCGG
TTCACAAATCGTCGAGAGCCCTCAATCCTAAACCCGTCCTTCCGCCCCAC
TCCCTCCCTTAGACCAGGGTTCGCTACGATTGTACTTTTCTCGGGCCTGC
CTTGGCCCACCAGGCACGCAGGAGGATATCATATTCTGGAATCTCACCGC
TTCATAGCAGCACGGTGCAGCAAGACGAGGCGCGGGCGTCGCGGGCAGGC
AACAACCCGGCCTTGGCTCCGGGCAAGGCCATCCGAGCCCAACGCCTCAA
GGACTTGCTATTGGAGAAGGAACTCCGCAACGATATCTCCACAGCCGAGT
TCGCATTAAATTTGGACATCGCACGGATAGAGCCACGAAGCGCCGATGGC
AAGGCCGGTGATGCGGGGGCTGGCAAGGGTAGTGGTGCATCCTATTCCTC
CAAAATGAGGCCGCGCGGTGTGATTGATTATGAGAAGATCGCGGAGAAGC
TGGAAAAGAGTTTGGAGCTCGTTGACCGCCGACAGGGACGTATGGCAGCA
GCCGTCGGCTGGGGTGCACGCGCGGGGGGGGATACTGAAGGAACCAAAGC
TGAGCCCCGATCTATAGGGGAGGAATCCACCCTTCGTGTGACGAAACGAC
TAAGCGAGACGCGGAGCGAGCTCCAAAATGTCCTGTGGAGGGTCCGGGCA
TCCATGGTGGGTACTAACAGCGGGAACACTAAGATTGGGGAGGGTAGTGG
CACGCCGGGTGGGGCCACCAGCGCAGCTGAGGTAGGTGCTGGGACGACAA
CAGCTGGAGAGGAGGGTGAGCGGCCCATGAACCCATTCACGGTGTTCGTG
CGAGAAGATGGGACGGTGGACTGGGACGGGGCTTTCCAGAGTGGCAAAGA
GCTAGCCAAATACAGTGGGGAGGTTTTTGAGCGGCTGCAAGGCAAGAGTC
CGGGGGAGGAGGAAACGCCACCTAAGGCGAGCACCAGTCTGGCCACAATT
GACGCCACCCCAGGCATGCAAGTTCTGCAGCAGTTTTTGCAGCAGCTCGA
GTCGGGACTGCGCTCTGCCGAAGATGAGCGTGATAAGTACGTAATGAGAT
TTGTGCGGGTACACGGGTGGGGATTTCATTGCTTGGGTGAGATACGGCAC
GTCTGCACGTTTTTCCTTTTTTGACTTCTCCACACGATTTCGTATAACCC
CATAAACATGCACCTACTAAATCGCCATCCGCTTGTGCATTCTTTGTCAC
AGGATTTTAGAATTGCACAAGGCTCTGCGTAAGCAAGGTTTGGATGTAAG
TAAGGCGCAGAAGGGTGAGCTCCGCATCGCTGAGGACCAGGCCGTGGAGA
TGAGGAGACGAGTTGAACTCCAGGTATGGAATACAGGTTGAAAGGAGAGA
GGGGTATTAAACAAGATGGGAAACATGCGCGTGCATAGAAAAATGACCGA
GTGCTTTCCTGGGCGGATGCAGACTGAATGCCTCCCAAGATTGCAAGAGT
CGATCTAGCCTCAGATATTTTTGGGGAACGTTTATTCCATGTATTTAAGG
CAATAGGCTTATTTATGTGCCTTGACCGTTGTGCGCGTGACATATATGAC
ATGGATACTTCGAACAGCCTTATTTATGTCCATTCATATATACATGGGTG
ACTGACTTCGGATAGACCGATAACACTCAGTGAATGTACAACGCGCGCAG
CCATAACACAAGAGATGCGCACAAACAACGTACTTACTGCTTCGCCCACT
CCTTCCCTCGAACACAACAGCGGCTGGACATGGACATGGAGCGTGTCTGT
GCGTACATTGAGCAGGAGATCGATCAGTCCACCTCGATCCGCGAGCAGAA
GCTGTTGGTGGCCGAATTTGGGCTCCTGGACGCCCAACTATCCACGCTCT
TGACCATGCTACAGGCTTCCGAGGTAAGTTTTGTGCATCTAGGAATCTGT
GGATAGTTGGTGCGTTTATATTTAATTTAAATTGTATCTTGCATCATCTA
GATATAAGATTGACTTTGTGTTTTTTGCATAAGAATGTGTGTCTTCTTTT
CAGGTAATTGGGTCTTTAATGACACAAAACTGACAAGACAAAGACCAAAC
TTGTGCGCTTACGTATGTCTGTGTCTGCTGTACCGTGCTATTATCGGTCG
AGTGATGATTGATGTAAAAGCCTACAAGCGTTTTGTAATCGGAGGCAAAC
GGCGATTTCCTGGTTCTTCGCATAGCACTAACGACGAGAAATCCAGACGC
CCATTTAATTTCAAATACACGAACATTGAAACCCATCCCACAGCCGTACA
TGGACGGCTCCTCATCGCTGCTGGAACTTGACGAGGACGAATTGCGTGTG
GTCGCGAGCGAGGTGCAGGACCTCAAGACCCGCCTGGGCCTCGTGGAGGA
TACTACGGGCGGCCCCAAAGTCGACTGGTCACTGTTCAACGCGTATGTGC
AAGAGAGCATCGGCAAGATTCGCAAGGGTGTTTCGTTCTACGTGACAGGC
GGCAAGCTCTTGACATCCGACCTCCAGTACGCTTGGTGGCTCATATCTCG
CGCTGCGCAAGGCTACACTCTCAAGCCGCGCGAGGTGCGAACGCTGCAGC
GCACGGCCAAGGACCTATTGACCCTGATCCCTTTTACCATTATTCTCATT
ATTCCCTTGACACCGATCGGGCATGTGCTTATCTTCTCCCTCATTCAGCG
CATTTTCCCCGACTTCTTTCCGAGCACTTTCACCGAGCGTCGTCAGAACC
TCTCCAAAATGTATGATGAAATCGACAAGAAACCGTCGGTCGAAGGCACC
CCACCGCCCTAAACTGGTCAGTAGTTCCAAACATGTGGCCATGCCTCGGA
GTCTAATGCGAGCAAGGACTATGAGAAGATGTGAGACGCGATAATAGCGG
GTATGTAGCATAATTAGTTTAATAATTTAAAACGTGTCTGCATGTGCGAC
CTTACGGAGCGAACGAACATTCCAGTTACTTGCAATAAAAAAGAGTCAAA
ATTAAGTGTTGGAAAGCGCAAAGACTTTCCAGGTACAAGTTATT back to topCoding sequence (CDS) from alignment at chr9:320396..324289+ >NO09G00930.2 ID=NO09G00930.2|Name=NO09G00930.2|organism=Nannochloropsis oceanica|type=CDS|length=1935bp|location=Sequence derived from alignment at chr9:320396..324289+ (Nannochloropsis oceanica) ATGTCGGGAATTGTTAGGAACATGCTAGTTGTCGGGCGCAGCCGATTGCT ATACATGTTTTGCTTCCTATGCTGCTACCAGGCGGTGGCCACGATGGTGG CCTACATGAAAGGACCAGGACGCCGACCTGAGGGCATTCGCCTCTCGCAT GCTGTCATCACATCATCGACCAGGGTTCGCTACGATTGTACTTTTCTCGG GCCTGCCTTGGCCCACCAGGCACGCAGGAGGATATCATATTCTGGAATCT CACCGCTTCATAGCAGCACGGTGCAGCAAGACGAGGCGCGGGCGTCGCGG GCAGGCAACAACCCGGCCTTGGCTCCGGGCAAGGCCATCCGAGCCCAACG CCTCAAGGACTTGCTATTGGAGAAGGAACTCCGCAACGATATCTCCACAG CCGAGTTCGCATTAAATTTGGACATCGCACGGATAGAGCCACGAAGCGCC GATGGCAAGGCCGGTGATGCGGGGGCTGGCAAGGGTAGTGGTGCATCCTA TTCCTCCAAAATGAGGCCGCGCGGTGTGATTGATTATGAGAAGATCGCGG AGAAGCTGGAAAAGAGTTTGGAGCTCGTTGACCGCCGACAGGGACGTATG GCAGCAGCCGTCGGCTGGGGTGCACGCGCGGGGGGGGATACTGAAGGAAC CAAAGCTGAGCCCCGATCTATAGGGGAGGAATCCACCCTTCGTGTGACGA AACGACTAAGCGAGACGCGGAGCGAGCTCCAAAATGTCCTGTGGAGGGTC CGGGCATCCATGGTGGGTACTAACAGCGGGAACACTAAGATTGGGGAGGG TAGTGGCACGCCGGGTGGGGCCACCAGCGCAGCTGAGGTAGGTGCTGGGA CGACAACAGCTGGAGAGGAGGGTGAGCGGCCCATGAACCCATTCACGGTG TTCGTGCGAGAAGATGGGACGGTGGACTGGGACGGGGCTTTCCAGAGTGG CAAAGAGCTAGCCAAATACAGTGGGGAGGTTTTTGAGCGGCTGCAAGGCA AGAGTCCGGGGGAGGAGGAAACGCCACCTAAGGCGAGCACCAGTCTGGCC ACAATTGACGCCACCCCAGGCATGCAAGTTCTGCAGCAGTTTTTGCAGCA GCTCGAGTCGGGACTGCGCTCTGCCGAAGATGAGCGTGATAAGATTTTAG AATTGCACAAGGCTCTGCGTAAGCAAGGTTTGGATGTAAGTAAGGCGCAG AAGGGTGAGCTCCGCATCGCTGAGGACCAGGCCGTGGAGATGAGGAGACG AGTTGAACTCCAGCGGCTGGACATGGACATGGAGCGTGTCTGTGCGTACA TTGAGCAGGAGATCGATCAGTCCACCTCGATCCGCGAGCAGAAGCTGTTG GTGGCCGAATTTGGGCTCCTGGACGCCCAACTATCCACGCTCTTGACCAT GCTACAGGCTTCCGAGCCGTACATGGACGGCTCCTCATCGCTGCTGGAAC TTGACGAGGACGAATTGCGTGTGGTCGCGAGCGAGGTGCAGGACCTCAAG ACCCGCCTGGGCCTCGTGGAGGATACTACGGGCGGCCCCAAAGTCGACTG GTCACTGTTCAACGCGTATGTGCAAGAGAGCATCGGCAAGATTCGCAAGG GTGTTTCGTTCTACGTGACAGGCGGCAAGCTCTTGACATCCGACCTCCAG TACGCTTGGTGGCTCATATCTCGCGCTGCGCAAGGCTACACTCTCAAGCC GCGCGAGGTGCGAACGCTGCAGCGCACGGCCAAGGACCTATTGACCCTGA TCCCTTTTACCATTATTCTCATTATTCCCTTGACACCGATCGGGCATGTG CTTATCTTCTCCCTCATTCAGCGCATTTTCCCCGACTTCTTTCCGAGCAC TTTCACCGAGCGTCGTCAGAACCTCTCCAAAATGTATGATGAAATCGACA AGAAACCGTCGGTCGAAGGCACCCCACCGCCCTAA back to top
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