NO09G00030.1, NO09G00030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00030.1
Unique NameNO09G00030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2268
Alignment locationchr9:7990..11434 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:7990..11434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO09G00030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00030NO09G00030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00030.1NO09G00030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00030.1.cds1NO09G00030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00030.1.cds2NO09G00030.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00030.1.cds3NO09G00030.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00030.1.cds4NO09G00030.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00030.1.cds5NO09G00030.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00030.1.cds6NO09G00030.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00030.1.cds7NO09G00030.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00030.1.cds8NO09G00030.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00030.1.cds9NO09G00030.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00030.1 ID=NO09G00030.1|Name=NO09G00030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2268bp
ATTTATCCCTCGCGCAATGCGTGGAGGGTACGTGGGATTACTGAGGTCCA
CGGTGTCTCTTGCCAGTCCCCTTTTATTCTGTTGAGTCTCCTCTGCGGGG
ATGATAATATATTTCATAAAAACTGACAGAAAAATTGCTTGTCTACTTGT
GGGCGGGCAACATGCTTTGGTGCCCTTGGCTGCCTACGAAACACGCATGG
CAAGCGTGAGACGTCGATTATGGCGGCCAAAACGAGGTCCCTTGACGCAT
TTAATGACGGCCTTAGCAATATGCCGCAGTTGATTTCTTGAAATAAACAT
GAATTGTCTGTTCTTTTCCACACCGTCCAAATAAGGCCTTTACGATGCGA
TCGCTGCAATTTCCGCATCAGGATTTTACCATCTCTTCAGAACGTGCTGT
TTTGTTGCTTCGGACATGCTTTGAGCTCGAAAGATGACCATATGCATATA
AAATCAATAACACTTACCCCGTTCGAGACAGTCAACAACATGAAGCGACC
TTACTTCGCCTTCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCATTCC
CAGTTCTTAGCGTTAATTCGCTTCCTCATGTTAACTACCAACGTGCTTCA
CAATGCTTGGTTGGCACCACACCACTGCCAATGTCAGAAGGAATAAAAGA
AGGCGGTGGTGGCAACGAAGCGCAGCAGCGTATGCAGCAGCAACAATTTA
TGCCCCAACACCAGCATCCCCAGCAGAACCAGCAGATGCAACATGGAGCA
GTGGCTCGACAGCTCTGGGTTCAAGACAGCAGAGAAGGAGTAGGAGACAT
CATACCGTTGCTCCGAGGCTGCTATGAAGGCAAGACGCCCATTGATGCCC
TCTACCGCGTTGCAGGCAAACTAGGGCTCAAGGTGGAGCTTATTGAAGGG
GATTTGGCCTCTCCCTCCGACCCATCGTCCCTCGCTGTTCCTGGTCAGAG
GCACCAAGGGCAGATGATCTCAATTTTGGTGTATATTGATGGACGACCGT
GCTCGTATGGAACGGCGGCAACCCGCGGCGCTGCCAAACACATCGCCTCC
CTGGAAGCGTTGCGACGTCTTCTCGTCTTTCTTGTTCATCCCATGCCCTT
CGACGACACCCTTCTCGTCTTTCCCTCGCAAAGTGGCCTCAACAACCCAA
CCTTTCACCTTCCCGCCCTCCATTCACCTGTTCTCCAAGCAATCAGCTAT
CGACCGATGTCTCCCGTGCCCATGCTCTCAGCAAATCCTTCATCTCCTTC
ACCTCCTCGGACACCGAGCACTCAATATTTCCCTTCCTTTCACTTGCCTC
ATGATCGTCCCTCTGTCTCTTTCTCACACGGGACACGGCTGCAGGGTCTT
ATGATCATTGGCGGGGAAGAAGAGGTCAAGGAGGACAGTGAGGGAGCACA
CGGTGGGGGACGGCACTGTCAGCAGCAGCAACATCAACGACAACATTATC
AGCAGCAAAGGCCACAGCAACAACTGCAGCAGTCTACTCCTTTGCCTTCC
GCTCACCAAGACTGGGGAGATGGGACACTTAGAGGATGGGGCAGCACTGG
TGGAAGCACTGCTTTCCCACCCACCCCTCCTCCTTCTCCTTCCATACATC
GCACACCAGCCTTGCCTTTGATTCCGACTGCAGTTCTTGTAGAAGACGAG
AGGGAGGAAGGAAAACCAATTCAATGGCCAGTTGGGACAAAGGCACCGAT
GCTGGGCGAATCATTTGTGGGCGGCATAGCCGAGGCGACGTTTTTGTTGA
ACAAACTATTGCAGGCCTTCAAGTCTCCGTCGCCTAAGATTACCCATACC
GAGATTACCGCACCTGCTCCCTCAAATTCCCCTTATCATCACAGGTGCGT
GGGTCTCCGGGGGTTTCCCTCCGTCCTGGGTTATGTCTGTACCGTCGAAG
TCCGCCTAGAAGGACCTGCCCTACAAGTTGCCACGTTAGTTCGGACCAAG
GCGCAAGCCCGATCTAAAAAAGAGTCATTGCAACTCGCATCTCGAGCAGT
TCTTGCCCATTTGTTCCCAGAGGCTACCAGTCTCCACCAGGTGGAAGAGG
CTCTTGCGCAGTATCAAGAAACCAAGAAAGAGGGGAGGCGGGAGATGTAT
CTCCTCAACAAGAAGGGTAAAAGATTGTCTCGCCAACAAGGCAATTATGG
GAACAGATCGATGAATGTGGAAAGACAGAAGGCGACCTTGGGTCGTGTAG
GAAAGAAGGGGATGGAAAAAAAGGAGATTTCGGTAGAGGAAGGAGATGAG
AAGAAAGAAGAACGGTGA
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protein sequence of NO09G00030.1

>NO09G00030.1-protein ID=NO09G00030.1-protein|Name=NO09G00030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=609bp
MHIKSITLTPFETVNNMKRPYFAFQQQQQQQQQQPFPVLSVNSLPHVNYQ
RASQCLVGTTPLPMSEGIKEGGGGNEAQQRMQQQQFMPQHQHPQQNQQMQ
HGAVARQLWVQDSREGVGDIIPLLRGCYEGKTPIDALYRVAGKLGLKVEL
IEGDLASPSDPSSLAVPGQRHQGQMISILVYIDGRPCSYGTAATRGAAKH
IASLEALRRLLVFLVHPMPFDDTLLVFPSQSGLNNPTFHLPALHSPVLQA
ISYRPMSPVPMLSANPSSPSPPRTPSTQYFPSFHLPHDRPSVSFSHGTRL
QGLMIIGGEEEVKEDSEGAHGGGRHCQQQQHQRQHYQQQRPQQQLQQSTP
LPSAHQDWGDGTLRGWGSTGGSTAFPPTPPPSPSIHRTPALPLIPTAVLV
EDEREEGKPIQWPVGTKAPMLGESFVGGIAEATFLLNKLLQAFKSPSPKI
THTEITAPAPSNSPYHHRCVGLRGFPSVLGYVCTVEVRLEGPALQVATLV
RTKAQARSKKESLQLASRAVLAHLFPEATSLHQVEEALAQYQETKKEGRR
EMYLLNKKGKRLSRQQGNYGNRSMNVERQKATLGRVGKKGMEKKEISVEE
GDEKKEER*
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mRNA from alignment at chr9:7990..11434+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00030.1 ID=NO09G00030.1|Name=NO09G00030.1|organism=Nannochloropsis oceanica|type=mRNA|length=3445bp|location=Sequence derived from alignment at chr9:7990..11434+ (Nannochloropsis oceanica)
ATTTATCCCTCGCGCAATGCGTGGAGGGTACGTGGGATTACTGAGGTCCA
CGGTGTCTCTTGCCAGTCCCCTTTTATTCTGTTGAGTCTCCTCTGCGGGG
ATGATAATATATTTCATAAAAACTGACAGAAAAATTGCTTGTCTACTTGT
GGGCGGGCAACATGCTTTGGTGCCCTTGGCTGCCTACGAAACACGCATGG
CAAGCGTGAGACGTCGATTATGGCGGCCAAAACGAGGTCCCTTGACGCAT
TTAATGACGGCCTTAGCAATATGCCGCAGTTGATTTCTTGAAATAAACAT
GAATTGTCTGTTCTTTTCCACACCGTCCAAATAAGGCCTTTACGATGCGA
TCGCTGCAATTTCCGCATCAGGATTTTACCATCTCTTCAGAACGTGCTGT
TTTGTTGCTTCGGACATGCTTTGAGCTCGAAAGATGACCATATGCATATA
AAATCAATAACACTTACCCCGTTCGAGACAGTCAACAACATGAAGCGACC
TTACTTCGCCTTCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCATTCC
CAGTTCTTAGCGTTAATTCGCTTCCTCATGTTAACTACCAACGTGCTTCA
CAATGCTTGGTTGGCACCACACCACTGCCAATGTCAGAAGGAATAAAAGA
AGGCGGTGGTGGCAACGAAGCGCAGCAGCGTATGCAGCAGCAACAATTTA
TGCCCCAACACCAGCATCCCCAGCAGAACCAGCAGATGCAACATGGAGCA
GTGGCTCGACAGCTCTGGGTTCAAGACAGCAGAGAAGGAGTAGGAGACAT
CATACCGTTGCTCCGAGGCTGCTATGAAGGCAAGACGCCCATTGATGGTA
AGAGGAAGGGAGGGTGGAAAAAGCGAGAGTAAAATATAAATGCTTGATAT
ATCTCGTGGTGTTCTTTTTCTCTTTTGGAGACCATACCTGTCTCATCGTT
TCCTCCTTTCCTCCTTCCCTCCTTTCCACCTTCTCTCTTTCTAGCCCTCT
ACCGCGTTGCAGGCAAACTAGGGCTCAAGGTGGAGCTTATTGAAGGGGAT
TTGGCCTCTCCCTCCGACCCATCGTCCCTCGCTGTTCCTGGTCAGAGGCA
CCAAGGGCAGATGATCTCAATTTTGGTGTATATTGATGGACGACCGTGCT
CGTATGGAACGGCGGGTAAGAAGCAACGGGTGAGAGAGGGGAATTAGATG
GACGAGGAGAAAAAACGGAGGAACTGAATGGGCGTGGAGTGTGGAAGAAC
GCATACCCACTCACCTCTCGTCCTATCCCTCTCTCCCACAGCAACCCGCG
GCGCTGCCAAACACATCGCCTCCCTGGAAGCGTTGCGACGTCTTCTCGTC
TTTCTTGTTCATCCCATGCCCTTCGACGACACCCTTCTCGTCTTTCCCTC
GCAAAGTGGCCTCAACAACCCAACCTTTCACCTTCCCGCCCTCCATTCAC
CTGTTCTCCAAGCAATCAGCTATCGACCGATGTCTCCCGTGCCCATGCTC
TCAGCAAATCCTTCATCTCCTTCACCTCCTCGGACACCGAGCACTCAATA
TTTCCCTTCCTTTCACTTGCCTCATGATCGTCCCTCTGTCTCTTTCTCAC
ACGGGACACGGCTGCAGGGTCTTATGATCATTGGCGGGGAAGAAGAGGTC
AAGGAGGACAGTGAGGGAGCACACGGTGGGGGACGGCACTGTCAGCAGCA
GCAACATCAACGACAACATTATCAGCAGCAAAGGCCACAGCAACAACTGC
AGCAGTCTACTCCTTTGCCTTCCGCTCACCAAGACTGGGGAGATGGGACA
CTTAGAGGATGGGGCAGCACTGGTGGAAGCACTGCTTTCCCACCCACCCC
TCCTCCTTCTCCTTCCATACATCGCACACCAGCCTTGCCTTTGATTCCGA
CTGCAGTTCTTGTAGAAGACGAGAGGGAGGAAGGAAAACCAATTCAATGG
CCAGTTGGGACAAAGGTATAAAGTGATAACAGAGAAGAAAGAAACGAAAA
GGGGAAAGAGTGTGGACGGGGAAGAGTGAGAAGGTTACATGTCGGCTGCA
TGTATCTAGTTGCAAGTATCCAAAATTAGGTTATCACACTCGGCTAAAAA
AAAGCTCTCTTGTCCCAAAATCTTTCCCCCCTCCGACACAGGCACCGATG
CTGGGCGAATCATTTGTGGGCGGCATAGCCGAGGCGACGTTTTTGTTGAA
CAAACTATTGCAGGTAAAGAGAGCAGAAGTGACTTTGGAGGGAACCAGGG
GCACTAGGATGGAAAGAGAGTGTTGAACAATTTCGATGGCAGGATAGAAA
TATTCCCAAAAGTAATATAATGACGAGAATACATTCATTCCCCCAACTCA
ATCGTTTCCATTCTCTTTTTCGCCCCTTCTAGGCCTTCAAGTCTCCGTCG
CCTAAGATTACCCATACCGAGATTACCGCACCTGCTCCCTCAAATTCCCC
TTATCATCACAGGCAAGTAAAATGAGGAAAGAGCGAGGGATAAGTGCGTA
TTTTCTATTGAAAGTGAAAGTGGCTTTAGATGCAATTAAGCGAGCTCGCA
CAGGTCAATTATACCACGGATGCGCGTACTTACTCGATGAGATATGTGCT
GTTTATGTTTCCGTGTCATCATTCATCAATCTCAGCTTTTCATTTCTCTG
CATTATTTCCTACATAAACAGGTGCGTGGGTCTCCGGGGGTTTCCCTCCG
TCCTGGGTTATGTCTGTACCGTCGAAGTCCGCCTAGAAGGACCTGCCCTA
CAAGTTGCCACGTTAGTTCGGACCAAGGTATGTTTTGCTCGATCTTACCC
CATCTTTTCGTCCCACTTCTTGCATGCTAGCTTGTCATTGAGCAGTGATC
TCAATGTGAGAACCACTTCGGTATCTACCTATCCACTCACCTTCATTCAT
CACTTTTCTCTCCCCCATAATCAGGCGCAAGCCCGATCTAAAAAAGAGTC
ATTGCAACTCGCATCTCGAGCAGTTCTTGCCCATTTGTTCCCAGAGGCTA
CCAGTCTCCACCAGGTAATCTTGGAAGAAATCTAACAATTAAGTGAAAAT
TGAATGTAAAGAAATGATTTCTTAGATTTTCCTTCACATTTACGCAGGTG
GAAGAGGCTCTTGCGCAGTATCAAGAAACCAAGAAAGAGGGGAGGCGGGA
GATGTATCTCCTCAACAAGAAGGTACATATTTATTCAATGTTTTTTTATT
ATTTCTATTCGTCCGCGATACTTATTATGACTCCTTGACTTCTTCCACTC
ATTTCGCCCCTTGCTGCTCTTTCGCTCAATTCTTTTCTTCAGGGTAAAAG
ATTGTCTCGCCAACAAGGCAATTATGGGAACAGATCGATGAATGTGGAAA
GACAGAAGGCGACCTTGGGTCGTGTAGGAAAGAAGGGGATGGAAAAAAAG
GAGATTTCGGTAGAGGAAGGAGATGAGAAGAAAGAAGAACGGTGA
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Coding sequence (CDS) from alignment at chr9:7990..11434+

>NO09G00030.1 ID=NO09G00030.1|Name=NO09G00030.1|organism=Nannochloropsis oceanica|type=CDS|length=1827bp|location=Sequence derived from alignment at chr9:7990..11434+ (Nannochloropsis oceanica)
ATGCATATAAAATCAATAACACTTACCCCGTTCGAGACAGTCAACAACAT
GAAGCGACCTTACTTCGCCTTCCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCCATTCCCAGTTCTTAGCGTTAATTCGCTTCCTCATGTTAACTACCAA
CGTGCTTCACAATGCTTGGTTGGCACCACACCACTGCCAATGTCAGAAGG
AATAAAAGAAGGCGGTGGTGGCAACGAAGCGCAGCAGCGTATGCAGCAGC
AACAATTTATGCCCCAACACCAGCATCCCCAGCAGAACCAGCAGATGCAA
CATGGAGCAGTGGCTCGACAGCTCTGGGTTCAAGACAGCAGAGAAGGAGT
AGGAGACATCATACCGTTGCTCCGAGGCTGCTATGAAGGCAAGACGCCCA
TTGATGCCCTCTACCGCGTTGCAGGCAAACTAGGGCTCAAGGTGGAGCTT
ATTGAAGGGGATTTGGCCTCTCCCTCCGACCCATCGTCCCTCGCTGTTCC
TGGTCAGAGGCACCAAGGGCAGATGATCTCAATTTTGGTGTATATTGATG
GACGACCGTGCTCGTATGGAACGGCGGCAACCCGCGGCGCTGCCAAACAC
ATCGCCTCCCTGGAAGCGTTGCGACGTCTTCTCGTCTTTCTTGTTCATCC
CATGCCCTTCGACGACACCCTTCTCGTCTTTCCCTCGCAAAGTGGCCTCA
ACAACCCAACCTTTCACCTTCCCGCCCTCCATTCACCTGTTCTCCAAGCA
ATCAGCTATCGACCGATGTCTCCCGTGCCCATGCTCTCAGCAAATCCTTC
ATCTCCTTCACCTCCTCGGACACCGAGCACTCAATATTTCCCTTCCTTTC
ACTTGCCTCATGATCGTCCCTCTGTCTCTTTCTCACACGGGACACGGCTG
CAGGGTCTTATGATCATTGGCGGGGAAGAAGAGGTCAAGGAGGACAGTGA
GGGAGCACACGGTGGGGGACGGCACTGTCAGCAGCAGCAACATCAACGAC
AACATTATCAGCAGCAAAGGCCACAGCAACAACTGCAGCAGTCTACTCCT
TTGCCTTCCGCTCACCAAGACTGGGGAGATGGGACACTTAGAGGATGGGG
CAGCACTGGTGGAAGCACTGCTTTCCCACCCACCCCTCCTCCTTCTCCTT
CCATACATCGCACACCAGCCTTGCCTTTGATTCCGACTGCAGTTCTTGTA
GAAGACGAGAGGGAGGAAGGAAAACCAATTCAATGGCCAGTTGGGACAAA
GGCACCGATGCTGGGCGAATCATTTGTGGGCGGCATAGCCGAGGCGACGT
TTTTGTTGAACAAACTATTGCAGGCCTTCAAGTCTCCGTCGCCTAAGATT
ACCCATACCGAGATTACCGCACCTGCTCCCTCAAATTCCCCTTATCATCA
CAGGTGCGTGGGTCTCCGGGGGTTTCCCTCCGTCCTGGGTTATGTCTGTA
CCGTCGAAGTCCGCCTAGAAGGACCTGCCCTACAAGTTGCCACGTTAGTT
CGGACCAAGGCGCAAGCCCGATCTAAAAAAGAGTCATTGCAACTCGCATC
TCGAGCAGTTCTTGCCCATTTGTTCCCAGAGGCTACCAGTCTCCACCAGG
TGGAAGAGGCTCTTGCGCAGTATCAAGAAACCAAGAAAGAGGGGAGGCGG
GAGATGTATCTCCTCAACAAGAAGGGTAAAAGATTGTCTCGCCAACAAGG
CAATTATGGGAACAGATCGATGAATGTGGAAAGACAGAAGGCGACCTTGG
GTCGTGTAGGAAAGAAGGGGATGGAAAAAAAGGAGATTTCGGTAGAGGAA
GGAGATGAGAAGAAAGAAGAACGGTGA
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Synonyms
Publications